View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_low_28 (Length: 227)
Name: NF2252_low_28
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 10135215 - 10135423
Alignment:
| Q |
1 |
tgcaatccgattttgtaagaatgagttatgctcgatatcaaaacctaatatatagaaaaagaaaagaaacgaagttggttttgtcgcaccgtcgtgcgca |
100 |
Q |
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| T |
10135215 |
tgcaagccgattttgtaggaatgagttatgctcgatatcaaaacctaatatatagaaaaagaaaagaaacgaagttggttttgtcgcaccgtcgtgcgca |
10135314 |
T |
|
| Q |
101 |
acacaggtcccatattctagtgcattttagaatattgcaatcctgtagtgaattgagtaaatagtttgttgtttacttctattctcatttgagtcaataa |
200 |
Q |
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| T |
10135315 |
acacaggtcccatattctagtgcattttagaatattgcaatcctgtagtgaattgagtaaatagtttgttgtttacttctattctcatttgagtcaataa |
10135414 |
T |
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| Q |
201 |
ctgacccca |
209 |
Q |
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||||||||| |
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| T |
10135415 |
ctgacccca |
10135423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 10144513 - 10144605
Alignment:
| Q |
121 |
tgcattttagaatattgcaatcctgtagtgaattgagtaaatagtttgttgtttac--ttctattctc---atttgagtcaataactgacccc |
208 |
Q |
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| T |
10144513 |
tgcattttagaagattgttttccggtagtgaattgagtaaatagtttgttgtttacttttctattttcaatatttgagttaataactgacccc |
10144605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 33145689 - 33145649
Alignment:
| Q |
11 |
ttttgtaagaatgagttatgctcgatatcaaaacctaatat |
51 |
Q |
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| T |
33145689 |
ttttgtaagaatgagttaggctcaatataaaaacctaatat |
33145649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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