View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_low_3 (Length: 531)
Name: NF2252_low_3
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 357 - 462
Target Start/End: Complemental strand, 38428793 - 38428687
Alignment:
| Q |
357 |
aacaccccaatttttgtattgatatattttagtattattatg-taaaatattaccccaagtatgtttgttgtggattgacaatttttaatgtgtttttct |
455 |
Q |
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| T |
38428793 |
aacaccccaatttttgtattgatatactttaggattattatgctaaattattaccccaaatatgtttgatgtggattgacaatttttaatgtgtttttct |
38428694 |
T |
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| Q |
456 |
atatgtg |
462 |
Q |
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|||||| |
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| T |
38428693 |
ttatgtg |
38428687 |
T |
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Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 25487135 - 25487199
Alignment:
| Q |
460 |
gtgctcatattatataatacaaaattttcaggaaaacccacatctctttctgattgcctatgcta |
524 |
Q |
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| T |
25487135 |
gtgctcatattatataaatcaaaattttcaggaaaacccacatctctttctgattccctatgcta |
25487199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 25433629 - 25433565
Alignment:
| Q |
460 |
gtgctcatattatataatacaaaattttcaggaaaacccacatctctttctgattgcctatgcta |
524 |
Q |
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||||||||||||||| ||||||| |||||||||||||| | || ||||||||||| |||| |||| |
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| T |
25433629 |
gtgctcatattatatcatacaaatttttcaggaaaaccaatatgtctttctgattccctacgcta |
25433565 |
T |
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