View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_low_31 (Length: 219)
Name: NF2252_low_31
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 11079580 - 11079777
Alignment:
| Q |
1 |
aaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatga |
100 |
Q |
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| T |
11079580 |
aaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgttttgttgagctttggaagcttagggagattttctaaggctcaaattaatca |
11079679 |
T |
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| Q |
101 |
gatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccag |
198 |
Q |
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| T |
11079680 |
gatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccag |
11079777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 11018828 - 11018973
Alignment:
| Q |
9 |
tgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagcta |
108 |
Q |
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| T |
11018828 |
tgtttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttctagggctcaattgaatgagatagcta |
11018927 |
T |
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| Q |
109 |
ttggtttggaaaaaagtgaacaaagattcttgtggattgttaggag |
154 |
Q |
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| T |
11018928 |
ttggattggagaaaagtgagcaaagattcttgtgggttgttaggag |
11018973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 11002443 - 11002636
Alignment:
| Q |
5 |
tgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagata |
104 |
Q |
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| T |
11002443 |
tgggtgtttgatttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttgaatgagata |
11002542 |
T |
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| Q |
105 |
gctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccag |
198 |
Q |
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| T |
11002543 |
gctattggattggagaaaagtgagcaaagattcttatggattgtaaggagcgagtcaaacttggaggaacttagtttggatgacttgttgccag |
11002636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 191
Target Start/End: Original strand, 10982246 - 10982399
Alignment:
| Q |
38 |
tcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagctattggtttggaaaaaagtgaacaaagattc |
137 |
Q |
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| T |
10982246 |
tcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcagttgaatgagatagcacttggattggaaaaaagtgagcaaagattc |
10982345 |
T |
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| Q |
138 |
ttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttg |
191 |
Q |
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| T |
10982346 |
ttgtgggttattaggagcgagttggatttagaggagcaaagtttggacgagttg |
10982399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 10968295 - 10968449
Alignment:
| Q |
37 |
gtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagctattggtttggaaaaaagtgaacaaagatt |
136 |
Q |
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| T |
10968295 |
gtcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcagttgaatgagatagcacttggattggaaataagtgagcaaagatt |
10968394 |
T |
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| Q |
137 |
cttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttg |
191 |
Q |
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| T |
10968395 |
cttgtgggttgttaggagtgagttggacttagaggagcaaagtttggacgagttg |
10968449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 18300190 - 18300086
Alignment:
| Q |
3 |
agtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgaga |
102 |
Q |
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| T |
18300190 |
agtgggtgtttgagttggctcaacttgcaacctagtcaaagtgttgtgtttttgagctttggaagctatggaagatttttaaagcgtcaaataaaagaga |
18300091 |
T |
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| Q |
103 |
tagct |
107 |
Q |
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||||| |
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| T |
18300090 |
tagct |
18300086 |
T |
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