View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2252_low_7 (Length: 432)

Name: NF2252_low_7
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2252_low_7
NF2252_low_7
[»] chr3 (6 HSPs)
chr3 (17-425)||(18871021-18871423)
chr3 (205-322)||(18166934-18167050)
chr3 (85-227)||(19395707-19395841)
chr3 (33-63)||(19395672-19395702)
chr3 (36-65)||(14032926-14032955)
chr3 (38-74)||(17105260-17105296)
[»] chr5 (2 HSPs)
chr5 (20-65)||(13398352-13398398)
chr5 (38-74)||(28735838-28735873)
[»] chr8 (2 HSPs)
chr8 (36-74)||(29651646-29651684)
chr8 (36-70)||(31244012-31244046)
[»] chr2 (1 HSPs)
chr2 (38-76)||(22556234-22556272)
[»] chr6 (2 HSPs)
chr6 (38-75)||(29236255-29236292)
chr6 (36-64)||(32931514-32931542)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 18871423 - 18871021
Alignment:
Q  17 actaacacatatggctacattaatcacttctattttcttaaattattactagtgtctacgttttcgtgtgtgtttgtgtcatgtctagtgtatctgtatg 116  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||  ||||| ||||||    
T  18871423 actaacacatgtgactacattaatcacttctattttcttaaattattacaaatgtctacgttttggtgtgtatttgtgtcatgtcttatgtatatgtatg 18871324  T
Q  117 tgcctgtgattgatagatatgcctcttccagtgaagtgaagcagtgctccgatgaaatttatgtatgtgcctgtctggataaattaaa-gaataataatt 215  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||| |||||||||||    
T  18871323 tgcctgtgattgaaagatatgccccttccagtgaagtgaagcagtactccgatgaaatttatgt--------gtctggataaattaaaagaataataatt 18871232  T
Q  216 ggttcaagtcatgttgcttactgcattttatatatcctataatttccaaatcaatcatatcttttccatcaaaagtacatatataatgaactcaagaagg 315  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18871231 ggttcaagtcatgttgcttgctgcattttatatatcctataatttccaaatcaatcatatcttttccatcaaaagtacatatataatgaactcaagaagg 18871132  T
Q  316 agaaatgaaactcaataaaggagtataaaatgaaactcacttaaaaataaga-tttattagacgacaaacgaatgagatatacttcttaattatagtcca 414  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  18871131 agaaatgaaactcaataaaggaggataaaatgaaactcacttgaaaatcagattttattagacgacaaacgaatgagatatacttgttaattatagtcca 18871032  T
Q  415 aaatgacctat 425  Q
    |||||||||||    
T  18871031 aaatgacctat 18871021  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 18166934 - 18167050
Alignment:
Q  205 gaataataattggttcaagtcatgttgcttactgcattttatatatcctataatttccaaatcaatcatatcttttccatcaaaagtacatatataatga 304  Q
    ||||||||| |||||||||||||  ||||| |||||||||||||||| | ||||| | |||| || ||||||| |||||||||||||||| |||||||||    
T  18166934 gaataataaatggttcaagtcattctgcttgctgcattttatatatcttgtaattacaaaat-aagcatatctgttccatcaaaagtacaaatataatga 18167032  T
Q  305 actcaagaaggagaaatg 322  Q
    ||||||| ||||||||||    
T  18167033 actcaagcaggagaaatg 18167050  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 19395707 - 19395841
Alignment:
Q  85 tgtgtttgtgtcatgtctagtgtatctgtatgtgcctgtgattgatagatatgcctcttccagtgaagtgaagcagtgctccgatgaaatttatgtatgt 184  Q
    ||||| |||||||| ||| |||| |  ||||||| | ||||||||||| |||  | ||||||||||||||||||| | |||||||||||||||||         
T  19395707 tgtgtctgtgtcatatcttgtgtctaagtatgtgtcagtgattgatagttatatcgcttccagtgaagtgaagcactactccgatgaaatttatg----- 19395801  T
Q  185 gcctgtctggataaattaaagaataataattggttcaagtcat 227  Q
       ||||||||||||||| |||||||| |||||||||||||||    
T  19395802 ---tgtctggataaattatagaataattattggttcaagtcat 19395841  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 19395672 - 19395702
Alignment:
Q  33 acattaatcacttctattttcttaaattatt 63  Q
    |||||||||||||||||||||||||||||||    
T  19395672 acattaatcacttctattttcttaaattatt 19395702  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 14032955 - 14032926
Alignment:
Q  36 ttaatcacttctattttcttaaattattac 65  Q
    ||||||||||||||||||||||||||||||    
T  14032955 ttaatcacttctattttcttaaattattac 14032926  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 17105296 - 17105260
Alignment:
Q  38 aatcacttctattttcttaaattattactagtgtcta 74  Q
    |||||||| |||||||||||||||||| |||||||||    
T  17105296 aatcacttttattttcttaaattattattagtgtcta 17105260  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 13398398 - 13398352
Alignment:
Q  20 aacacatatggctacatt-aatcacttctattttcttaaattattac 65  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  13398398 aacacatatggctacatttaatcacttctattttcttaaattattac 13398352  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 28735838 - 28735873
Alignment:
Q  38 aatcacttctattttcttaaattattactagtgtcta 74  Q
    |||||||||||||||||||||||||||| ||||||||    
T  28735838 aatcacttctattttcttaaattattac-agtgtcta 28735873  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 29651646 - 29651684
Alignment:
Q  36 ttaatcacttctattttcttaaattattactagtgtcta 74  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  29651646 ttaatcacttctattttcttaaaatattactagcgtcta 29651684  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 31244046 - 31244012
Alignment:
Q  36 ttaatcacttctattttcttaaattattactagtg 70  Q
    |||||||||| ||||||||||||||||||||||||    
T  31244046 ttaatcacttatattttcttaaattattactagtg 31244012  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 22556272 - 22556234
Alignment:
Q  38 aatcacttctattttcttaaattattactagtgtctacg 76  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  22556272 aatcacttctattttcttaaattattacctgtgtctacg 22556234  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 29236292 - 29236255
Alignment:
Q  38 aatcacttctattttcttaaattattactagtgtctac 75  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  29236292 aatcacttctattttctcaaattattattagtgtctac 29236255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 32931514 - 32931542
Alignment:
Q  36 ttaatcacttctattttcttaaattatta 64  Q
    |||||||||||||||||||||||||||||    
T  32931514 ttaatcacttctattttcttaaattatta 32931542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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