View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2252_low_8 (Length: 422)
Name: NF2252_low_8
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 38934088 - 38933916
Alignment:
| Q |
8 |
gacatcatcatcataaaacaaaaatgcatacaacacttaagctaaaagcaagtataggaaaataagccaccatgaattcttaaacggaacatgtttaagc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38934088 |
gacatcatcatcataaaacaaaaatgcatataacacttaagctaaaagcaagtataggaaaataagccaccatgaattcttaaatggaacatgtttaagc |
38933989 |
T |
|
| Q |
108 |
taaaatgtcaaagcaattgccaacacataaacattgcaataggttaaaaaacaatgcatagtttcatggcaagcat |
183 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38933988 |
taaaaggtcaaagcaattgccaacacataaacattgcaataggtt---aaacaatgcatagtttcatggcaagcat |
38933916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 319 - 407
Target Start/End: Complemental strand, 38933623 - 38933535
Alignment:
| Q |
319 |
tagtgattctatatgcaagaatgactttcgtaacaacccagcaacaaatttttaactaatcttgatcaaattataagaacgttgttggt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38933623 |
tagtgattctatatgcaagaatgactttcgtaacaacccagcaacaaatttttaactaatcttcatcaaattataagaacgttgttggt |
38933535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 185 - 307
Target Start/End: Complemental strand, 38933887 - 38933765
Alignment:
| Q |
185 |
acttcatatttgacaagagagttatcaagttagtccctctttctccgccatgttcnnnnnnnnnnnnnnnntttcatcttcggtagcatgatgaaatgca |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38933887 |
acttcatatttgacaagagagttatcaagttagtccctctttctccaccatgttcaaaaaataataaaaaatttcatcttcggtagcatgatgaaatgca |
38933788 |
T |
|
| Q |
285 |
aattttatagttattaaagcttg |
307 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38933787 |
aattttatagttattaaagcttg |
38933765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University