View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_low_9 (Length: 417)
Name: NF2252_low_9
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_low_9 |
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| [»] scaffold1778 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold1778 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold1778
Description:
Target: scaffold1778; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 130 - 417
Target Start/End: Original strand, 607 - 894
Alignment:
| Q |
130 |
tttcgtgggaacaaacaaccatacaaaccggattaaacagtttttccaagaggaccagtatcatgacaagagatttgaaggaaggcgttggcgcaacacg |
229 |
Q |
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| T |
607 |
tttcgtgggaacaaaaaaccatacaaaccggattaaacagtttttccaagaggaccagtatcatgacaagagatttgaaggaaggcgttgggacaacatg |
706 |
T |
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| Q |
230 |
gcagcgcggaagcagtgatccatcggcaagatgaatcaatcgatctctggctatggtattgaagtttcataacctcgatgacgtcatgattgatggtttc |
329 |
Q |
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| T |
707 |
gcggcgcggaagcagtgatccatcggcaagatgaatcaatcgatctctggctatggtattgaagtttcatcacctcgacgacgtcatgattgaaggattc |
806 |
T |
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| Q |
330 |
ggtcatcacggtgatgaggtagagagaaagggtttacgaatcatgatttgtgattcggaaacgtggtcaaggttagctttacctcttc |
417 |
Q |
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| T |
807 |
ggtcatcacggtgatgaggtagtgagaaagggtttacgaatcatgatttgcgattcggaaacgtggtcaaggttagttttacctcttc |
894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1778; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 438 - 553
Alignment:
| Q |
16 |
gatacaacaaggccataaaacaagaaattggtttacaaaatcaaacaatcgatagtatgcacagacactagtgatatacaaaagaaagattaaacctgac |
115 |
Q |
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| T |
438 |
gatacaacaaggccataaaacaagaaattggtttacaaaatcaaacaatcgctagtatgcacagacactagtgatatacaaaagaaagattaaacctgac |
537 |
T |
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| Q |
116 |
aattgctgagagattt |
131 |
Q |
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| T |
538 |
aattgctgagagattt |
553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 130 - 413
Target Start/End: Complemental strand, 723227 - 722943
Alignment:
| Q |
130 |
tttcgtgggaacaaacaaccatacaaaccggattaaacagtttttccaagaggaccagtatcatgacaagagatttgaaggaaggcgttggcgcaacacg |
229 |
Q |
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| T |
723227 |
tttcgtgggaacaaacaaccatacaaaccggattaaacagtttttccaagaagactagtatcatgacaagagatttgaaggaaggcgttgggataacacg |
723128 |
T |
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| Q |
230 |
gcagcgcggaagcagtgatccat-cggcaagatgaatcaatcgatctctggctatggtattgaagtttcataacctcgatgacgtcatgattgatggttt |
328 |
Q |
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| T |
723127 |
gcggcgcggaagcattgatccattcggcaagatgaatcaatcgatctctggctatggtattgaagtttcatcaccttgacgacgtcatgattgaaggatt |
723028 |
T |
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| Q |
329 |
cggtcatcacggtgatgaggtagagagaaagggtttacgaatcatgatttgtgattcggaaacgtggtcaaggttagctttacct |
413 |
Q |
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| T |
723027 |
cggtcatcacggtgatgaggtagtgagaaagggtttacgaatcacgatttgtgattcggaaacgtggtcaaggttagttttacct |
722943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 130 - 417
Target Start/End: Original strand, 550318 - 550602
Alignment:
| Q |
130 |
tttcgtgggaacaaacaaccatacaaaccggattaaacagtttttccaagaggaccagtatcatgacaagagatttgaaggaaggcgttggcgcaacacg |
229 |
Q |
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| T |
550318 |
tttcgtgggaacaaacaaccatacaaaccgaattaaacagtttgtccaaaaggaccagtatcatgacgtgagatttgaaggaaggagtggtgagaacacg |
550417 |
T |
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| Q |
230 |
gcagcgcggaagcagtgatccatcggcaagatgaatcaatcgatctctggctatggtattgaagtttcataacctcgatgacgtcatgattgatggtttc |
329 |
Q |
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| T |
550418 |
gcggcggggaagcagtgatccatcagcaagatgaatcaatcgatctctggctatgctattaaattttcatcgcctc---gacgtagtgatcgaaggattc |
550514 |
T |
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| Q |
330 |
ggtcatcacggtgatgaggtagagagaaagggtttacgaatcatgatttgtgattcggaaacgtggtcaaggttagctttacctcttc |
417 |
Q |
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| T |
550515 |
tgtcatcacggcgatgaggtagtgaaaaagggtttccgaatcacgatttgcgattcagaaacgtggtcaaggttagttttacgtcttc |
550602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 550149 - 550264
Alignment:
| Q |
16 |
gatacaacaaggccataaaacaagaaattggtttacaaaatcaaacaatcgatagtatgcacagacactagtgatatacaaaagaaagattaaacctgac |
115 |
Q |
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| T |
550149 |
gatacaacaaggccataaaacaagaaattggtttacaaaatcaaacaatcgctagtatgcacagacactagtcatatacaaaagaaagattaaacctgat |
550248 |
T |
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| Q |
116 |
aattgctgagagattt |
131 |
Q |
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| T |
550249 |
aattgttgagagattt |
550264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 417
Target Start/End: Complemental strand, 23421632 - 23421573
Alignment:
| Q |
358 |
agggtttacgaatcatgatttgtgattcggaaacgtggtcaaggttagctttacctcttc |
417 |
Q |
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| T |
23421632 |
agggtttccaaatcatgatttgcgattcagaaacgtggtcaaggtttgttttacctcttc |
23421573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 8998312 - 8998253
Alignment:
| Q |
357 |
aagggtttacgaatcatgatttgtgattcggaaacgtggtcaaggttagctttacctcttc |
417 |
Q |
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| T |
8998312 |
aagggtttccaaatcatgattt-tgattcagaaacgtggtcgaggttagttttacctcttc |
8998253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 15157944 - 15158003
Alignment:
| Q |
357 |
aagggtttacgaatcatgatttgtgattcggaaacgtggtcaaggttagctttacctcttc |
417 |
Q |
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| T |
15157944 |
aagggtttccaaatcacgattt-tgattcagaaacgtggtcgaggttagttttacctcttc |
15158003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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