View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_high_11 (Length: 342)
Name: NF2253_high_11
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 327
Target Start/End: Original strand, 48876714 - 48877035
Alignment:
| Q |
4 |
gaacataaagttggtacttcgaaaatactttgataattattgaacaaaaatgtaagaactataaactacttggcaatgagtgtatcacaagcattcattt |
103 |
Q |
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| T |
48876714 |
gaacataaagttggtacttcgaaaatactttgataattattgaacaaaaatgtaagaactataaactacttggcaatgagtgtatcacaagcattcattt |
48876813 |
T |
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| Q |
104 |
ttctcgttgcaaaattattaagaaatgccagtagatatgattttaccaaatggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtga |
203 |
Q |
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| T |
48876814 |
ttctcattgcaaaattattaagaaatgccagtagatatga-tttaccaaatggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtga |
48876912 |
T |
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| Q |
204 |
acagaagaactgttgatgttactgcatctggacnnnnnnnnnntctattcgtatagccatgaacttactggccatctcgctgaagttcagagcaacctct |
303 |
Q |
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| T |
48876913 |
acagaagaactgttgatgttactgcatctggac-aaaaaaaaatctattcgtatagccatgaacttactggcgatctcgctgaagttcagagcaacctct |
48877011 |
T |
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| Q |
304 |
ttgcaatgcaccggcttgccacag |
327 |
Q |
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|||||||||||||| ||||||||| |
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| T |
48877012 |
ttgcaatgcaccggattgccacag |
48877035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 8381420 - 8381353
Alignment:
| Q |
157 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgtta |
224 |
Q |
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| T |
8381420 |
ggccaaagcttgttcctcagctagcattgatcggctcaagaacttgaatagaagaactgttgatgtta |
8381353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 53456860 - 53456785
Alignment:
| Q |
157 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatct |
232 |
Q |
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||||||||||||| | || |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
53456860 |
ggccaaagcttgttcttcagctagtgttgcttggctgaagaatgtgaacagaagaactgttgatgttattgcatct |
53456785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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