View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_high_20 (Length: 253)
Name: NF2253_high_20
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_high_20 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40782351 - 40782585
Alignment:
| Q |
1 |
aattttaatattgatttattacatagtatggtcatattatttttattataagaacatatgttcatattaattcgtgtggtccttctcattctaattatca |
100 |
Q |
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| T |
40782351 |
aattttaatattgatttattacatagtatggtcatattatttttattataagaacatatgttcatattaattcgtgtgatccttctcattctaattatca |
40782450 |
T |
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| Q |
101 |
tagtctcaatacatagatttagttcttaattaccctgctcaattccggacccataaccttttcatccttatcaattttgttacttgctaaataattaaag |
200 |
Q |
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| T |
40782451 |
tagtctctatacatggatttagttcttaattaccctgctcaattccggacccataaccttttcatccttatcaattttgttacttgctaaataattaaag |
40782550 |
T |
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| Q |
201 |
nnnnnnntaaagatcaaagtgaacaaaggtgtagg |
235 |
Q |
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| T |
40782551 |
aaaaaaataaagatcaaagtgaacaaaggtgtagg |
40782585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 10399 - 10634
Alignment:
| Q |
1 |
aattttaatattgatttattacatagtatggtcatattatttttattataagaacatatgttcatattaattcgtgtggtccttctcattctaattatca |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10399 |
aattttaatattgatt-attacatagtatggtcatattatttttattataagaacatatgttcatattaattcgtgtgatccttctcattctaattatca |
10497 |
T |
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| Q |
101 |
tagtctcaatacatagatttagttcttaattaccctgctcaattccggacccataaccttttcatccttatcaattttgttacttgctaaataa--ttaa |
198 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
10498 |
tagtctctatacatggatttagttcttaattaccctgctcaattccggacccataaccttttcatccttatcaattttgttacttgctaaataaattaaa |
10597 |
T |
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| Q |
199 |
agnnnnnnntaaagatcaaagtgaacaaaggtgtagg |
235 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
10598 |
agaaaaaaataaagatcaaagtgaacaaaggtgtagg |
10634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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