View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2253_high_22 (Length: 250)

Name: NF2253_high_22
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2253_high_22
NF2253_high_22
[»] chr4 (15 HSPs)
chr4 (1-236)||(4524977-4525212)
chr4 (60-209)||(37615151-37615300)
chr4 (21-183)||(20669094-20669256)
chr4 (80-208)||(42953922-42954050)
chr4 (14-209)||(10353530-10353725)
chr4 (60-208)||(9993247-9993395)
chr4 (94-209)||(22540253-22540368)
chr4 (95-180)||(55298234-55298319)
chr4 (95-180)||(23873920-23874005)
chr4 (129-178)||(47540538-47540587)
chr4 (129-205)||(10426351-10426427)
chr4 (129-208)||(33312982-33313061)
chr4 (129-178)||(8487459-8487508)
chr4 (129-177)||(5817659-5817707)
chr4 (129-177)||(8655551-8655599)
[»] chr7 (17 HSPs)
chr7 (20-209)||(26078764-26078953)
chr7 (20-209)||(26102551-26102740)
chr7 (86-209)||(31025934-31026057)
chr7 (79-208)||(19728070-19728199)
chr7 (23-183)||(5020944-5021104)
chr7 (14-204)||(47105973-47106163)
chr7 (14-204)||(42565416-42565606)
chr7 (60-204)||(13554587-13554731)
chr7 (5-183)||(37724239-37724418)
chr7 (80-208)||(43021928-43022056)
chr7 (129-178)||(46623317-46623366)
chr7 (128-180)||(45235561-45235613)
chr7 (105-208)||(9975416-9975519)
chr7 (129-177)||(9546351-9546399)
chr7 (2-77)||(5326485-5326560)
chr7 (98-141)||(18670820-18670863)
chr7 (36-110)||(42431006-42431080)
[»] chr8 (11 HSPs)
chr8 (60-209)||(43254135-43254284)
chr8 (80-208)||(11394775-11394903)
chr8 (14-209)||(30501550-30501745)
chr8 (80-208)||(24793335-24793462)
chr8 (39-182)||(7555056-7555199)
chr8 (98-180)||(30261299-30261381)
chr8 (98-209)||(23941899-23942010)
chr8 (128-177)||(39483217-39483266)
chr8 (129-180)||(16421487-16421538)
chr8 (98-209)||(27083197-27083308)
chr8 (129-179)||(2871803-2871853)
[»] chr3 (19 HSPs)
chr3 (63-208)||(10867283-10867428)
chr3 (12-209)||(54440474-54440671)
chr3 (1-183)||(9163479-9163661)
chr3 (23-183)||(19824167-19824327)
chr3 (60-203)||(20198504-20198647)
chr3 (86-209)||(27497344-27497467)
chr3 (79-208)||(14868213-14868342)
chr3 (12-141)||(27969051-27969180)
chr3 (139-234)||(27968797-27968891)
chr3 (88-209)||(53946337-53946458)
chr3 (98-209)||(38926366-38926477)
chr3 (129-178)||(49732411-49732460)
chr3 (95-179)||(25873556-25873640)
chr3 (129-180)||(29309018-29309069)
chr3 (129-179)||(7146653-7146703)
chr3 (129-183)||(28675407-28675461)
chr3 (83-141)||(42675870-42675928)
chr3 (129-178)||(6176956-6177005)
chr3 (98-166)||(2813947-2814015)
[»] chr2 (15 HSPs)
chr2 (86-208)||(32244037-32244159)
chr2 (60-209)||(3119549-3119698)
chr2 (23-204)||(4040419-4040600)
chr2 (60-209)||(11234873-11235022)
chr2 (60-204)||(9669415-9669559)
chr2 (62-208)||(26490664-26490810)
chr2 (128-208)||(37139285-37139365)
chr2 (98-180)||(22052238-22052320)
chr2 (95-180)||(31594165-31594250)
chr2 (95-179)||(26681493-26681577)
chr2 (98-209)||(8066673-8066784)
chr2 (145-208)||(38443853-38443916)
chr2 (98-179)||(13549736-13549817)
chr2 (129-180)||(33547483-33547534)
chr2 (95-180)||(9949708-9949793)
[»] chr5 (17 HSPs)
chr5 (80-208)||(4399460-4399588)
chr5 (80-208)||(8571513-8571641)
chr5 (80-208)||(19513894-19514022)
chr5 (23-183)||(35123078-35123238)
chr5 (80-208)||(17737744-17737867)
chr5 (128-208)||(3199604-3199684)
chr5 (86-165)||(13916900-13916979)
chr5 (98-179)||(15500093-15500174)
chr5 (95-180)||(34480567-34480652)
chr5 (99-179)||(6264646-6264726)
chr5 (98-208)||(32917900-32918010)
chr5 (95-180)||(34858137-34858222)
chr5 (105-165)||(31862219-31862279)
chr5 (5-142)||(30510399-30510536)
chr5 (5-142)||(30550739-30550876)
chr5 (98-162)||(6866084-6866148)
chr5 (129-165)||(10487384-10487420)
[»] chr1 (16 HSPs)
chr1 (79-204)||(41503328-41503454)
chr1 (23-183)||(16873864-16874024)
chr1 (60-204)||(49265373-49265517)
chr1 (1-192)||(44929835-44930025)
chr1 (60-204)||(39429865-39430009)
chr1 (60-209)||(20795250-20795399)
chr1 (98-209)||(34854087-34854198)
chr1 (95-180)||(37530175-37530260)
chr1 (95-180)||(32353741-32353826)
chr1 (144-208)||(6890901-6890965)
chr1 (144-208)||(6892747-6892811)
chr1 (129-180)||(3692238-3692289)
chr1 (129-180)||(48073910-48073961)
chr1 (129-178)||(25639941-25639990)
chr1 (129-177)||(4644627-4644675)
chr1 (129-177)||(21527775-21527823)
[»] chr6 (14 HSPs)
chr6 (60-209)||(13085121-13085270)
chr6 (21-183)||(33804389-33804551)
chr6 (14-204)||(4474290-4474475)
chr6 (80-208)||(33572629-33572757)
chr6 (98-209)||(23066497-23066608)
chr6 (36-180)||(11468199-11468343)
chr6 (98-209)||(31297591-31297702)
chr6 (98-209)||(4406594-4406705)
chr6 (95-180)||(8873270-8873355)
chr6 (98-178)||(23347913-23347993)
chr6 (101-209)||(24749230-24749338)
chr6 (110-209)||(6284296-6284395)
chr6 (129-180)||(15673436-15673487)
chr6 (129-179)||(13755077-13755127)
[»] scaffold0707 (1 HSPs)
scaffold0707 (80-208)||(1035-1163)
[»] scaffold0308 (1 HSPs)
scaffold0308 (98-209)||(16244-16355)
[»] scaffold0220 (1 HSPs)
scaffold0220 (111-177)||(22673-22739)
[»] scaffold0029 (1 HSPs)
scaffold0029 (129-177)||(135114-135162)
[»] scaffold0002 (2 HSPs)
scaffold0002 (129-177)||(312941-312989)
scaffold0002 (129-177)||(328395-328443)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4524977 - 4525212
Alignment:
Q  1 tctacagctactttggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgat 100  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4524977 tctacagctacattggttgttgtgtacttgggtgatgtggaacgaatgcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgat 4525076  T
Q  101 aagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggca 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| ||||||||||||||||    
T  4525077 aagattaaattgttatctttagcgtgactgaaagctaaaaaagccacttttgtttttgatactaagacgtggtggtcaagtcctatggcttgtctgggca 4525176  T
Q  201 ttggctaacgccgggtggttttggttttctcttgcc 236  Q
    |||||||||  | |||||||||||||||||||||||    
T  4525177 ttggctaaccacaggtggttttggttttctcttgcc 4525212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 37615300 - 37615151
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||||||||  ||||  ||||||||||||||||| ||||| |||||||| |||||| | ||||||| |||||| |||||||||||||||||    
T  37615300 tgtttaaaaatgttgtaaccgaggctcctagattgcttgataaaattaagttgttatcgttagtgcggctgaaagttaaaaatgccacttttgtttttgg 37615201  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
     ||||||  |||||||||||||||  ||| ||||||||||||||||||||    
T  37615200 aactcagatgtggtggtcaagtcctttggtttgtctgggcattggctaac 37615151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 20669256 - 20669094
Alignment:
Q  21 tgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatcttt 120  Q
    ||||||||||| |  ||||||||||| | |||||||| |||||||||||||||||||  || ||||| || ||| | |||||||||||||||||||| ||    
T  20669256 tgtgtacttggattgtgtggaacgaacgtaataaccgcctgtttaataatgttgtaacggacgtcccgaggttgttggataagattaaattgttatcatt 20669157  T
Q  121 agtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtcc 183  Q
    || |||  |||| |||||||||||||  ||||||| ||||||||||  |||||||||||||||    
T  20669156 agggtggatgaaggctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcc 20669094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 42953922 - 42954050
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||| ||| ||||||| |||||| ||||||||||||||||| |||||   |||||||||||    
T  42953922 gaggttcctagattacttgataaaattaagttgttatctttagcgtggctgaaagataaaaatgccacttttgtttttggaactcaaatgtggtggtcaa 42954021  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||| |||| |||| ||||| ||||||||    
T  42954022 gtcctatggtttgtttgggctttggctaa 42954050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 10353725 - 10353530
Alignment:
Q  14 tggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgt 113  Q
    |||||||||  |||||||||||| ||||  ||  | ||||| ||  ||||||| |||||||||| |||||  ||||||||||| ||||| ||||| ||||    
T  10353725 tggcttttgactacttgggtgatttggagtgagcgtaataatcgtttgtttaaaaatgttgtaactgaggctcctagattgctagataaaattaagttgt 10353626  T
Q  114 tatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
     ||| |||||||| ||||||| |||||| |  ||||||||||| || ||||||  |||||||||||||||  ||| |||| |||||||||||||||    
T  10353625 catcgttagtgtggctgaaagttaaaaatgtaacttttgttttcggaactcagatgtggtggtcaagtcctttggtttgtttgggcattggctaac 10353530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 9993247 - 9993395
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||| ||||  ||||  |||||| |||||||||| ||||| |||||||| |||  ||| |||||| ||||||| | |||||||||||||||    
T  9993247 tgtttaaaaatgtggtaaccgaggctcctagactgcttgataaaattaagttgttatcgttatagtggctgaaaactaaaaatgtcacttttgtttttgg 9993346  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaa 208  Q
     ||||||  ||||||||||||||| || |||||||||||||||| ||||    
T  9993347 aactcagatgtggtggtcaagtcctatagcttgtctgggcattgactaa 9993395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 22540368 - 22540253
Alignment:
Q  94 gcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgt 193  Q
    |||||||||||||||||  || || |||||||||||||  ||||||||||| |  ||||||||||||| ||||  |||||||| ||| ||  || |||||    
T  22540368 gcttgataagattaaatctttgtccttagtgtgactgacggctaaaaaagctatatttgtttttggtattcagaagtggtggttaagccctttgacttgt 22540269  T
Q  194 ctgggcattggctaac 209  Q
     | |||||||||||||    
T  22540268 ttaggcattggctaac 22540253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 55298319 - 55298234
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    |||||||||||||| ||||| ||| |||  ||  |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  55298319 cttgataagattaagttgttgtctctaggttggttgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaag 55298234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 23873920 - 23874005
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||||||||||  |||| ||| |||  ||  |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  23873920 cttgataagattaagctgttgtctctaggttggttgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaag 23874005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 47540587 - 47540538
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtca 178  Q
    |||||||||||||||| |||||||| ||||||||||||  ||||||||||    
T  47540587 tgaaagctaaaaaagctacttttgtgtttggtactcagcagtggtggtca 47540538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 10426351 - 10426427
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggc 205  Q
    ||||||||||||| | ||||||| ||||| | ||||||  ||||||||||||||| ||| ||||| ||||| |||||    
T  10426351 tgaaagctaaaaatgtcacttttattttttgaactcagatgtggtggtcaagtcctatgacttgtttgggcgttggc 10426427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 33313061 - 33312982
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaa 208  Q
    |||||| ||||||||  |||||||||||||| ||||||  |||||||||||| ||  | | |||| ||||||||||||||    
T  33313061 tgaaagttaaaaaagttacttttgtttttgggactcagcagtggtggtcaagccctcttgtttgtttgggcattggctaa 33312982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 8487459 - 8487508
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtca 178  Q
    |||||||||||||||| || ||||||||||| ||||||  ||||||||||    
T  8487459 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtca 8487508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 5817659 - 5817707
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||||||||||||| | |||||||| ||||||||||||  |||||||||    
T  5817659 tgaaagctaaaaaaactacttttgtgtttggtactcagcagtggtggtc 5817707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 8655551 - 8655599
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||| ||||||||||| |||||||| ||||||||||||  |||||||||    
T  8655551 tgaaggctaaaaaagctacttttgtgtttggtactcagcagtggtggtc 8655599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 26078764 - 26078953
Alignment:
Q  20 ttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctt 119  Q
    |||||||| |||||||||||||| ||    ||||||||  |||||||||||||||||| |||  ||||||| ||| |||||||||||||| ||||||  |    
T  26078764 ttgtgtacctgggtgatgtggaatgatcctaataaccgtatgtttaataatgttgtaactgatatccctaggttgtttgataagattaaactgttattgt 26078863  T
Q  120 tagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
    ||| ||| ||||||||||||||| |||| ||||||||||||||||||  ||||||||||||||  ||| |||||||||||||||||||||    
T  26078864 tagcgtggctgaaagctaaaaaaaccacatttgtttttggtactcagaggtggtggtcaagtcatatgacttgtctgggcattggctaac 26078953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 26102551 - 26102740
Alignment:
Q  20 ttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctt 119  Q
    |||||||| |||||||||||||| ||    ||||||||  |||||||||||||||||| |||  ||||||| ||| |||||||||||||| ||||||  |    
T  26102551 ttgtgtacctgggtgatgtggaatgatcctaataaccgtatgtttaataatgttgtaactgatatccctaggttgtttgataagattaaactgttattgt 26102650  T
Q  120 tagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
    ||| ||| ||||||||||||||| |||| ||||||||||||||||||  ||||||||||||||  ||| |||||||||||||||||||||    
T  26102651 tagcgtggctgaaagctaaaaaaaccacatttgtttttggtactcagaggtggtggtcaagtcatatgacttgtctgggcattggctaac 26102740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 31025934 - 31026057
Alignment:
Q  86 cctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaa 185  Q
    ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||      
T  31025934 cctagattgcttgataatattaagttgttatcgttagtgtggctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcctt 31026033  T
Q  186 tggcttgtctgggcattggctaac 209  Q
    |||||||| |||||||||||||||    
T  31026034 tggcttgtttgggcattggctaac 31026057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 19728199 - 19728070
Alignment:
Q  79 tgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtca 178  Q
    |||||| |||||||| |||||||| ||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  19728199 tgaggttcctagattacttgataaaattaagttgttatctttagcgtggctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtca 19728100  T
Q  179 agtccaatggcttgtctgggcattggctaa 208  Q
    ||||| |||| |||| ||||| ||||||||    
T  19728099 agtcctatggtttgtttgggctttggctaa 19728070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 5020944 - 5021104
Alignment:
Q  23 tgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttag 122  Q
    ||||||||| |  ||||||||||| | |||||||| |||||||||||||||||||  || |||||  | ||| | |||||||||||||||||||| ||||    
T  5020944 tgtacttggattgtgtggaacgaacgtaataaccgcctgtttaataatgttgtaacggacgtcccgcggttgttggataagattaaattgttatcattag 5021043  T
Q  123 tgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtcc 183  Q
     ||| |||||||||||||||||||  ||||||| ||||||||||  |||||||||||||||    
T  5021044 ggtggctgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcc 5021104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 47105973 - 47106163
Alignment:
Q  14 tggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgt 113  Q
    |||||||||  |||||||||||| ||||  ||  | ||||| ||  ||||||| ||||||||||  ||||  ||||||||||||||||| || |||||||    
T  47105973 tggcttttgactacttgggtgatttggagtgagcgtaataatcgtttgtttaaaaatgttgtaaccgaggctcctagattgcttgataaaatcaaattgt 47106072  T
Q  114 tatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattgg 204  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| |||||   |||||||||| ||||  | |||||| ||||||||||    
T  47106073 tatcgttagtgtgacttaaagctaaaaatgccacttttgtttttggaactcatatgtggtggtcatgtcctttagcttgtttgggcattgg 47106163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 42565606 - 42565416
Alignment:
Q  14 tggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgt 113  Q
    |||||||||  |||||||||||| ||||  ||  | ||||| ||  ||||||| ||||||||||  ||||  ||||||||||||||||| ||||| ||||    
T  42565606 tggcttttgactacttgggtgatttggagtgagcgtaataatcgtttgtttaaaaatgttgtaaccgaggctcctagattgcttgataaaattaagttgt 42565507  T
Q  114 tatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattgg 204  Q
    |||| |||||||| || ||||||||||| ||||||||||||||||| |||||   |||||||||| ||||  | |||||| ||||||||||    
T  42565506 tatcgttagtgtggcttaaagctaaaaatgccacttttgtttttggaactcatatgtggtggtcatgtcctttagcttgtttgggcattgg 42565416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 13554587 - 13554731
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||||||||  ||||  ||||| ||||||||||| ||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||    
T  13554587 tgtttaaaaatgttgtaaccgaggctcctagtttgcttgataaaattaagttgttatcgttagtgtggcttaaagctaaaaatgccacttttgtttttgg 13554686  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattgg 204  Q
     |||||   |||||||||| ||||  | | |||| ||||||||||    
T  13554687 aactcatatgtggtggtcatgtcctttagtttgtttgggcattgg 13554731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 37724239 - 37724418
Alignment:
Q  5 cagctactttggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataaga 104  Q
    |||||| ||||| || ||||||||| | |  ||||||||||| | |||||||   |||||| |||||||||||  || || || || ||| | |||||||    
T  37724239 cagctaatttggattctgtgtactttgattgtgtggaacgaacgtaataaccacttgtttagtaatgttgtaacggacgtacccaggttgttggataaga 37724338  T
Q  105 ttaaattgttatctttagtgtgactgaaagctaaaaaagc-cacttttgtttttggtactcagtcgtggtggtcaagtcc 183  Q
    ||||||||||||| |||| ||| ||||||||||||||| | ||  ||||||| ||||||||||  |||||||||||||||    
T  37724339 ttaaattgttatcattagggtggctgaaagctaaaaaaactcatgtttgtttatggtactcagatgtggtggtcaagtcc 37724418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 43021928 - 43022056
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| ||||| || |||||||| ||||| ||||||||||||| ||| ||||| | |||||| ||||||||||||||||| ||||||  |||||  ||||    
T  43021928 gaggttcctaggttacttgataaaattaagttgttatctttagcgtggctgaaggttaaaaatgccacttttgtttttggaactcagatgtggtaatcaa 43022027  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||| |||| |||| ||||| ||| ||||    
T  43022028 gtcctatggtttgtttgggctttgactaa 43022056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 46623366 - 46623317
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtca 178  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  46623366 tgaaagctaaaaaagctacttttgtttttggtacccagtagtggtggtca 46623317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 45235613 - 45235561
Alignment:
Q  128 ctgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||    
T  45235613 ctgaatgctaaaaaagctacctttgtttttggaactcagtcgtggtggtcaag 45235561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 9975519 - 9975416
Alignment:
Q  105 ttaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattgg 204  Q
    |||||||||||||||||  ||| |||||||||| ||| | ||  |||||||||| ||| |||  |||||||||||||||  | | |||||||| ||||||    
T  9975519 ttaaattgttatctttaaggtggctgaaagctagaaatgtcatgtttgtttttgatacacagaggtggtggtcaagtcctttagtttgtctggacattgg 9975420  T
Q  205 ctaa 208  Q
    ||||    
T  9975419 ctaa 9975416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 9546399 - 9546351
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  9546399 tgaaagctaaaaaagctacttttgtgtttggtactcagcagtggtggtc 9546351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 5326560 - 5326485
Alignment:
Q  2 ctacagctactttggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaa 77  Q
    ||||||||| |||||||| |||||||||||||  | ||||||||| | || |||||  |||| |||||||||||||    
T  5326560 ctacagctaatttggcttctgtgtacttgggttgtctggaacgaacgaaacaaccggttgttcaataatgttgtaa 5326485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 18670863 - 18670820
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaa 141  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||    
T  18670863 gataaggttaaattgttatctttagggtggctgaaagctaaaaa 18670820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 42431080 - 42431006
Alignment:
Q  36 tgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaat 110  Q
    ||||||||||| ||||||||||  | || ||||||||| ||  ||| |||||||| || ||||||||||||||||    
T  42431080 tgtggaacgaacgcaataaccgttttttcaataatgttatatctgatgtccctaggttacttgataagattaaat 42431006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 43254135 - 43254284
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||||||||  ||||  ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  43254135 tgtttaaaaatgttgtaaccgaggctcctagattgcttgataaaattaaattgttatcgttagtgtggctgaaagctaaaaatgccacttttgtttttgg 43254234  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
     ||||||  |||||||||||||||  || ||||| |||||||||||||||    
T  43254235 aactcagatgtggtggtcaagtcctttgacttgtttgggcattggctaac 43254284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 11394775 - 11394903
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||   ||||||| ||||||| ||||||  |||||||||||    
T  11394775 gaggttcctagattacttgataaaattaagttgttatctttagtgtggctgaaagctaaaaatatcacttttatttttggaactcagatgtggtggtcaa 11394874  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||| || | |||| ||||| ||||||||    
T  11394875 gtcctatcgtttgtttgggctttggctaa 11394903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 30501745 - 30501550
Alignment:
Q  14 tggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgt 113  Q
    |||||| | ||| |||||||  ||||||| ||| | |||||||| ||||||||||||||| ||| ||| || ||||| |||||||||||||||||||  |    
T  30501745 tggcttctttgtgcttgggttttgtggaatgaacgtaataaccgtctgtttaataatgttataactgatgtacctaggttgcttgataagattaaatctt 30501646  T
Q  114 tatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
    | || |||| |||  |||  |||||||||||||  |||||||||||||||||   |||||||||||| ||  |||||||| | |||||||| ||||    
T  30501645 tgtccttagcgtggttgacggctaaaaaagccatgtttgtttttggtactcataggtggtggtcaagccccttggcttgtttaggcattggttaac 30501550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 24793462 - 24793335
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||| |||  |||| |||||||| |||||||||| |||||| ||||||  |||||||||||    
T  24793462 gaggttcctagattacttgataaaattaagttgttatctttagcgtggttgaaggctaaaaatgccacttttg-ttttggaactcagatgtggtggtcaa 24793364  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||| |||| |||| ||||| ||||||||    
T  24793363 gtcctatggtttgtttgggctttggctaa 24793335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 182
Target Start/End: Complemental strand, 7555199 - 7555056
Alignment:
Q  39 ggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaa 138  Q
    |||||||| | |||||||| ||||||||||||| | |||  ||  || | ||||||||||||||||||||||||||||| ||||  || |||||||||||    
T  7555199 ggaacgaacgtaataaccgtctgtttaataatgctctaaccgatatcaccagattgcttgataagattaaattgttatcgttaggatggctgaaagctaa 7555100  T
Q  139 aaaagccacttttgtttttggtactcagtcgtggtggtcaagtc 182  Q
    || || ||  ||||| |||||||||| |  ||||||||||||||    
T  7555099 aatagtcatgtttgtatttggtactcggaggtggtggtcaagtc 7555056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 30261381 - 30261299
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    |||||| ||||||||||||||  || || ||||||||||||||| | ||  ||||||||||||||||||| ||||||||||||    
T  30261381 gataaggttaaattgttatctcaagggtaactgaaagctaaaaatgtcatatttgtttttggtactcagtagtggtggtcaag 30261299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 23942010 - 23941899
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||| | |||||||||||||||| |||||||||||||||||| || |  ||||||| |||||| |||   ||||||||||| |   | | ||||||||    
T  23942010 gataaggtcaaattgttatctttagagtgactgaaagctaaaaaggcaatgtttgtttatggtacgcagagatggtggtcaagcctgttagattgtctgg 23941911  T
Q  198 gcattggctaac 209  Q
    |||||| |||||    
T  23941910 gcattgactaac 23941899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 39483217 - 39483266
Alignment:
Q  128 ctgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||||||||||||||| ||||||| |||||||||||||| | ||||||||    
T  39483217 ctgaaagctaaaaaagtcacttttatttttggtactcagacttggtggtc 39483266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 16421487 - 16421538
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  16421487 tgaaagctaaaaaagctacctttgtttttggaactcagcagtggtggtcaag 16421538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 27083308 - 27083197
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||| |||||||||||||  |||  |||||||||| |||||| | ||  ||||||||| ||||||||  |||||| ||||| ||  | |||||||||     
T  27083308 gataaggttaaattgttatccataggatgactgaaagttaaaaatgtcatgtttgtttttcgtactcagaggtggtgatcaagccctttagcttgtctgt 27083209  T
Q  198 gcattggctaac 209  Q
    |||||| |||||    
T  27083208 gcattgactaac 27083197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 2871853 - 2871803
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    |||||||||||||||| || ||||||||||| ||||||  |||||||||||    
T  2871853 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaa 2871803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 10867428 - 10867283
Alignment:
Q  63 ttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtac 162  Q
    |||| ||||||||||||||||  ||||||||||||||||| ||||| |||||||| |||| ||| ||||||||||||||  |||||||||||||||| ||    
T  10867428 ttaaaaatgttgtaattgaggctcctagattgcttgataaaattaagttgttatcgttagcgtggctgaaagctaaaaataccacttttgtttttggaac 10867329  T
Q  163 tcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaa 208  Q
    ||||  ||||||||||||||  ||||||||||||||||||||||||    
T  10867328 tcagatgtggtggtcaagtctcatggcttgtctgggcattggctaa 10867283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 54440474 - 54440671
Alignment:
Q  12 tttggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaatt 111  Q
    |||||||| | || |||||||||  |||||||||| |||| || |||||||||||||||||||| | ||| || ||||| || ||||||||||| |||||    
T  54440474 tttggcttctttgcacttgggtgtcgtggaacgaacgcaacaatcgactgtttaataatgttgttactgatgttcctaggttacttgataagatcaaatt 54440573  T
Q  112 gttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
    |||||| ||||||||  |||||| |||||||||||  |||| ||||||||||||   |||||||||||||||  |||||||| |||||||||||||||    
T  54440574 gttatcgttagtgtggatgaaaggtaaaaaagccatatttgattttggtactcataggtggtggtcaagtcctttggcttgtttgggcattggctaac 54440671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 9163479 - 9163661
Alignment:
Q  1 tctacagctactttggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgat 100  Q
    |||||||||| | ||| || | ||||||||| |  ||||||| ||| | |||||||| |||||||||||||||||||  || ||||| || ||| | |||    
T  9163479 tctacagctaatctggattctttgtacttggattgtgtggaatgaacgtaataaccgcctgtttaataatgttgtaacggatgtcccgaggttgttggat 9163578  T
Q  101 aagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtcc 183  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||  ||||||| ||||||||||  |||||||||||||||    
T  9163579 aagattaaattgttatctttagggtggctgaaagctaaaaaaaccatgtttgtttatggtactcagatgtggtggtcaagtcc 9163661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 19824167 - 19824327
Alignment:
Q  23 tgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttag 122  Q
    ||||||||| |  ||||||||||| | |||||||| |||||||||||||||||||  || ||||| || ||| | ||||||||||||||| |||| ||||    
T  19824167 tgtacttggattgtgtggaacgaacgtaataaccgcctgtttaataatgttgtaacggatgtcccgaggttgttggataagattaaattgatatcattag 19824266  T
Q  123 tgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtcc 183  Q
     ||| |||||||||||||||||||  ||||||| || |||||||  |||||||||||||||    
T  19824267 ggtggctgaaagctaaaaaagccatgtttgtttatgatactcagatgtggtggtcaagtcc 19824327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 20198504 - 20198647
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||||||||  ||||  ||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||   |||||||||||||||    
T  20198504 tgtttaaaaatgttgtaaccgaggctcctagattgcttgataaaattaagttgttatcgttagtgtggctgaaagctaaaaatatcacttttgtttttgg 20198603  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattg 203  Q
     ||||||  ||||||||||||||   |||||||| |||||||||    
T  20198604 aactcagatgtggtggtcaagtcttttggcttgtttgggcattg 20198647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 27497467 - 27497344
Alignment:
Q  86 cctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaa 185  Q
    |||||||| |||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| | ||||  |||||||||||||||      
T  27497467 cctagattacttgataaaattaagttgttatcgttagtgtggctgaaagctaaaaatgccacttttgtttttggaattcagatgtggtggtcaagtcctt 27497368  T
Q  186 tggcttgtctgggcattggctaac 209  Q
    |||||||| ||| |||||||||||    
T  27497367 tggcttgtttggacattggctaac 27497344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 14868213 - 14868342
Alignment:
Q  79 tgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtca 178  Q
    |||||| |||||||| |||||||| ||||  |||||||||||||  || |||||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  14868213 tgaggttcctagattacttgataaaattatgttgttatctttagcttggctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtca 14868312  T
Q  179 agtccaatggcttgtctgggcattggctaa 208  Q
    ||||| |||| |||| ||||| ||||||||    
T  14868313 agtcctatggtttgtttgggctttggctaa 14868342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 27969180 - 27969051
Alignment:
Q  12 tttggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaatt 111  Q
    |||||||||| | | |||||||||||||||||||| | ||||| ||  |||||||||||||||||| |||| | ||||||||||||||||  ||||| ||    
T  27969180 tttggcttttttcttcttgggtgatgtggaacgaacgtaataatcgtttgtttaataatgttgtaactgagattcctagattgcttgatagaattaagtt 27969081  T
Q  112 gttatctttagtgtgactgaaagctaaaaa 141  Q
    |||||| |||||||| ||||||||||||||    
T  27969080 gttatcgttagtgtggctgaaagctaaaaa 27969051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 27968891 - 27968797
Alignment:
Q  139 aaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaacgccgggtggttttggttttctcttg 234  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||  ||||||||||||||||| ||||||  | ||||||||| |||||||||||    
T  27968891 aaaagccacttttgtttttggcactcagatgtggtggtcaagtcctctggcttgtctgggcatttgctaaccactggtggtttt-gttttctcttg 27968797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 53946337 - 53946458
Alignment:
Q  88 tagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatg 187  Q
    ||||||||||||||| ||||| |||||||| ||| ||||  ||||||||||||| |  ||||||||||| || ||||||  ||||||||||| |||  ||    
T  53946337 tagattgcttgataaaattaagttgttatcgttaatgtggttgaaagctaaaaatgtaacttttgttttaggaactcagatgtggtggtcaaatcctttg 53946436  T
Q  188 gcttgtctgggcattggctaac 209  Q
    | |||| |||||||||||||||    
T  53946437 gtttgtttgggcattggctaac 53946458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 38926477 - 38926366
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||| | |||||||||||||||| ||| ||||||| |||||| || |  ||||||| |||||| |||  |||||||||||| ||  | | ||||||||    
T  38926477 gataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctatgtttgtttatggtacgcagaggtggtggtcaagcccgttagattgtctgg 38926378  T
Q  198 gcattggctaac 209  Q
     |||||||||||    
T  38926377 acattggctaac 38926366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 49732411 - 49732460
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtca 178  Q
    |||||||||||||||| |||||||| ||||||||||||  ||||||||||    
T  49732411 tgaaagctaaaaaagctacttttgtgtttggtactcagcagtggtggtca 49732460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 25873556 - 25873640
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||||||| |||| ||| | |||||||  || ||||||||||||||||| |  ||||||||||| ||||||  |||||||||||    
T  25873556 cttgataaggttaagttgatgtctttaggttggctgaaagctaaaaaagctatctttgtttttggaactcagcagtggtggtcaa 25873640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 29309069 - 29309018
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  29309069 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaag 29309018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 7146703 - 7146653
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    |||||||||||||||| || ||||||||||| ||||||  |||||||||||    
T  7146703 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaa 7146653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 28675407 - 28675461
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtcc 183  Q
    |||||| ||||||||| ||||||||||| ||||| |||| ||||||||| |||||    
T  28675407 tgaaagttaaaaaagctacttttgttttcggtacgcagtagtggtggtcgagtcc 28675461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 42675870 - 42675928
Alignment:
Q  83 gtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaa 141  Q
    |||||| ||||| | |||||| |||||||||||||||| | ||| ||||||||||||||    
T  42675870 gtccctcgattgttagataaggttaaattgttatctttggggtggctgaaagctaaaaa 42675928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 6176956 - 6177005
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtca 178  Q
    |||||||||||||||| || ||||||||||| ||||||  ||||||||||    
T  6176956 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtca 6177005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 2813947 - 2814015
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcag 166  Q
    ||||||||||| ||||| ||| |||  ||  |||||||||||||||| || ||||||||||| ||||||    
T  2813947 gataagattaagttgttgtctctaggttggttgaaagctaaaaaagctacctttgtttttgggactcag 2814015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 32244037 - 32244159
Alignment:
Q  86 cctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaa 185  Q
    ||||||||||||||||| ||||| |||||||| |||| ||| |||||||||||||| ||||||||||||||||  ||||||  ||||||||||||||| |    
T  32244037 cctagattgcttgataaaattaagttgttatcgttagcgtggctgaaagctaaaaatgccacttttgtttttgaaactcagatgtggtggtcaagtccta 32244136  T
Q  186 tggcttgtctgggcattggctaa 208  Q
    |||||||||||||||||||||||    
T  32244137 tggcttgtctgggcattggctaa 32244159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 3119698 - 3119549
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||||||||  |||   ||||||||||||||||| ||||| |||||||| |||||||| | |||||||||||| |||||||||||||||||    
T  3119698 tgtttaaaaatgttgtaaccgagactcctagattgcttgataaaattaagttgttatcgttagtgtggcggaaagctaaaaatgccacttttgtttttgg 3119599  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
     ||||||  ||||||||||||||   |||||||| |||||||||||||||    
T  3119598 aactcagatgtggtggtcaagtcatttggcttgtttgggcattggctaac 3119549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 4040419 - 4040600
Alignment:
Q  23 tgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttag 122  Q
    ||||| |||||| | ||||||||| | || ||| |||||||||||||||||||||  || || ||||| || ||||||||||||||| ||||||| ||||    
T  4040419 tgtacatgggtgttatggaacgaacgtaacaactgactgtttaataatgttgtaaccgatgttcctaggttacttgataagattaaactgttatcgttag 4040518  T
Q  123 tgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattgg 204  Q
     ||| |||||||||||||||||||| ||||||||||||||| |   |||||||||||||||  || ||||| | ||||||||    
T  4040519 cgtggctgaaagctaaaaaagccacatttgtttttggtactgataggtggtggtcaagtcctttgacttgtgtaggcattgg 4040600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 11234873 - 11235022
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| |||||||||| |||||  ||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||    ||||||||||||||    
T  11234873 tgtttaaaaatgttgtaactgaggctcctagattgcttgataaaattaagttgttatcgttagtgtggctgaaagctaaaaatataacttttgtttttgg 11234972  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
     ||||||  |||||||||||||||  ||| |||| |||||||||||||||    
T  11234973 aactcagatgtggtggtcaagtcctttggtttgtttgggcattggctaac 11235022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 9669415 - 9669559
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||||||||  ||||  ||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||    
T  9669415 tgtttaaaaatgttgtaaccgaggctcctagattgcttgataaaattaagttgttatcgttagtgtggcttaaagctaaaaaggccacttttgtttttgg 9669514  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattgg 204  Q
     |||||   |||||||||| ||||  | | |||| ||||||||||    
T  9669515 aactcatatgtggtggtcatgtcctttagtttgtttgggcattgg 9669559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 26490664 - 26490810
Alignment:
Q  62 tttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggta 161  Q
    |||||||||||||||| |||    || || ||||||||||||||||||||||||||||| |  || |||||||||||||||| ||  ||||| |||||||    
T  26490664 tttaataatgttgtaactgatactcccaggttgcttgataagattaaattgttatctttggcatggctgaaagctaaaaaagtcatgtttgtatttggta 26490763  T
Q  162 ctcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaa 208  Q
    |||||  ||||| |||||| ||  |||||||| |||| |||||||||    
T  26490764 ctcagaagtggtagtcaagccctttggcttgtttgggtattggctaa 26490810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 37139365 - 37139285
Alignment:
Q  128 ctgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaa 208  Q
    |||||||||||||| | || |||||||||||| ||||||  ||||||||||||||| |||| |||||||||||||| ||||    
T  37139365 ctgaaagctaaaaatgtcatttttgtttttggaactcagatgtggtggtcaagtcctatggtttgtctgggcattgactaa 37139285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 22052320 - 22052238
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||||||| ||||| |||||||  || || |||||||||||||| |||||||||||||| ||||||  ||||||||||||    
T  22052320 gataagattaagttgttgtctttaggttggcttaaagctaaaaaagctacttttgtttttggaactcagcagtggtggtcaag 22052238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 31594250 - 31594165
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||||| |||||||| | |||||||  || ||||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  31594250 cttgataaggttaaattgatgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcagcagtggtggtcaag 31594165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 26681577 - 26681493
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||||||| |||| ||||| |||||||  || ||||||||||||||||| || ||||||||||| |||||   |||||||||||    
T  26681577 cttgataaggttaagttgttgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcaacagtggtggtcaa 26681493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 8066673 - 8066784
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||| | |||||||||||||||| ||| ||||||| ||||||  | |  |||||||||||||| |||  |||||||||||| ||  | | |||||| |    
T  8066673 gataaggtcaaattgttatctttagggtggctgaaagttaaaaagacaatgtttgtttttggtacgcagaggtggtggtcaagcccgttagattgtctag 8066772  T
Q  198 gcattggctaac 209  Q
    ||||||||||||    
T  8066773 gcattggctaac 8066784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 38443853 - 38443916
Alignment:
Q  145 cacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaa 208  Q
    ||||||||||||||| ||||||  ||||||||||||||| || | ||||||||| |||||||||    
T  38443853 cacttttgtttttggaactcagatgtggtggtcaagtcctatagtttgtctgggtattggctaa 38443916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 13549817 - 13549736
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    |||||||||||  |||| |||||||  ||||| |||| ||||||||| || ||||||||||| ||||||  |||||||||||    
T  13549817 gataagattaagatgttgtctttaggttgacttaaagttaaaaaagctacctttgtttttggaactcagcagtggtggtcaa 13549736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 33547534 - 33547483
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  33547534 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaag 33547483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 9949708 - 9949793
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||||| |||| ||| | |||||||  || || |||||||||||||| || ||||||||||  ||||||  ||||||||||||    
T  9949708 cttgataaggttaagttgatgtctttaggttggctaaaagctaaaaaagctacctttgtttttgacactcagcagtggtggtcaag 9949793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 4399588 - 4399460
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||| | | |||||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  4399588 gaggttcctagattacttgataaaattaagttgttatctttagcgcggctgaaagctaaaaaagccacttttgtttttggaactcagatgtggtggtcaa 4399489  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||| |||| |||| |||||||| |||||    
T  4399488 gtcctatggtttgtttgggcattagctaa 4399460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 8571641 - 8571513
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||  |||||||||||    
T  8571641 gaggttcctagattacttgataaaattaagttgttatctttagcgtggctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaa 8571542  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||| |||| |||| ||||| ||||||||    
T  8571541 gtcccatggtttgtttgggctttggctaa 8571513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 19513894 - 19514022
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| ||||| || |||||||| ||||| ||||||||||||| ||| ||||| |||||||| ||||||||||||||||| ||||||  |||||||||||    
T  19513894 gaggttcctaggttacttgataaaattaagttgttatctttagcgtggctgaaggctaaaaatgccacttttgtttttggaactcagatgtggtggtcaa 19513993  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||| |||| |||| ||||| ||||||||    
T  19513994 gtcctatggtttgtttgggctttggctaa 19514022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 35123078 - 35123238
Alignment:
Q  23 tgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttag 122  Q
    ||||||||| |  ||||||||||| | |||||| | |||||||||||||||||||  || ||||| || ||| | |||||||||||||||||||| ||||    
T  35123078 tgtacttggattgtgtggaacgaacgtaataactgcctgtttaataatgttgtaacggacgtcccgaggttgttggataagattaaattgttatcattag 35123177  T
Q  123 tgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtcc 183  Q
     ||| ||||||||| |||||||||  ||||||| ||||||| ||  |||||||||||||||    
T  35123178 ggtggctgaaagctgaaaaagccatgtttgtttatggtacttagatgtggtggtcaagtcc 35123238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 17737867 - 17737744
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||||     |||||||||    
T  17737867 gaggttcctagattacttgataaaattaagttgttatctttagcgtggctgaaagctaaaaatgccacttttgtttttggaactca-----ggtggtcaa 17737773  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||| |||| |||| ||||| ||||||||    
T  17737772 gtcctatggtttgtttgggctttggctaa 17737744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 3199604 - 3199684
Alignment:
Q  128 ctgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaa 208  Q
    |||||||||||||| ||||||||||||||||| ||||||  ||||||||||||||| |||| |||| ||||||||| ||||    
T  3199604 ctgaaagctaaaaatgccacttttgtttttggaactcagatgtggtggtcaagtcctatggtttgtttgggcattgcctaa 3199684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 13916979 - 13916900
Alignment:
Q  86 cctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactca 165  Q
    ||||||||||||||||| ||||| |||||||  | || |||||||||||||||||| ||||||||||||||||| |||||    
T  13916979 cctagattgcttgataaaattaagttgttattgtcagcgtgactgaaagctaaaaatgccacttttgtttttggaactca 13916900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 15500093 - 15500174
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||||||||| || || |||||||  || || |||||||||||||| |||||||||||||| ||||||  |||||||||||    
T  15500093 gataagattaagttattgtctttaggttggcttaaagctaaaaaagctacttttgtttttggaactcagcagtggtggtcaa 15500174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 34480652 - 34480567
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||||| |||| ||| | |||||||  || ||||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  34480652 cttgataaggttaagttgatgtctttaggttggctgaaagctaaaaaagctacctttgtttttggcactcagcagtggtggtcaag 34480567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 6264646 - 6264726
Alignment:
Q  99 ataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| |||| ||||| |||||||  ||  |||||||||||||||| |||||||||||||| ||||||  |||||||||||    
T  6264646 ataaggttaagttgttgtctttaggttggttgaaagctaaaaaagctacttttgtttttggaactcagcagtggtggtcaa 6264726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 32918010 - 32917900
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||||||||  |||| |||||||  || || |||| ||||||||| || ||||||||||| ||||||  |||||||||||||||  | | |||| |||    
T  32918010 gataagattaagatgttgtctttaggttggcttaaagttaaaaaagctacctttgtttttggaactcagcagtggtggtcaagtcctcttgtttgtttgg 32917911  T
Q  198 gcattggctaa 208  Q
    | |||||||||    
T  32917910 gtattggctaa 32917900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 34858137 - 34858222
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||||||||||  |||| ||| |||  ||  |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  34858137 cttgataagattaagctgttgtctctaggttggttgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaag 34858222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 31862279 - 31862219
Alignment:
Q  105 ttaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactca 165  Q
    |||||||| | |||||||  || |||||||||||||| | |||||||||||||||||||||    
T  31862279 ttaaattgatgtctttaggatggctgaaagctaaaaatgtcacttttgtttttggtactca 31862219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 30510399 - 30510536
Alignment:
Q  5 cagctactttggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataaga 104  Q
    |||||| ||||| || ||||||||||| |  |||||| |||| | ||||||||  |||||  |||||||||||  || ||||| || ||  | ||||||     
T  30510399 cagctaatttggattctgtgtacttggattgtgtggatcgaacgtaataaccgcttgtttggtaatgttgtaacggatgtcccaaggttattggataagg 30510498  T
Q  105 ttaaattgttatctttagtgtgactgaaagctaaaaaa 142  Q
    ||||||||||||| |||  ||| |||||||| ||||||    
T  30510499 ttaaattgttatcattacggtggctgaaagcaaaaaaa 30510536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 30550739 - 30550876
Alignment:
Q  5 cagctactttggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataaga 104  Q
    |||||| ||||| || ||||||||||| |  |||||| |||| | ||||||||  |||||  |||||||||||  || ||||| || ||  | ||||||     
T  30550739 cagctaatttggattctgtgtacttggattgtgtggatcgaacgtaataaccgcttgtttggtaatgttgtaacggatgtcccaaggttattggataagg 30550838  T
Q  105 ttaaattgttatctttagtgtgactgaaagctaaaaaa 142  Q
    ||||||||||||| |||  ||| |||||||| ||||||    
T  30550839 ttaaattgttatcattacggtggctgaaagcaaaaaaa 30550876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 6866148 - 6866084
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtac 162  Q
    |||||| | |||||||||||||||| |||  ||||||||||||| ||||  ||||||| ||||||    
T  6866148 gataaggtcaaattgttatctttagggtggttgaaagctaaaaaggccatgtttgtttatggtac 6866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 10487384 - 10487420
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactca 165  Q
    |||||||||||||||| |||||||| |||||||||||    
T  10487384 tgaaagctaaaaaagctacttttgtgtttggtactca 10487420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 41503328 - 41503454
Alignment:
Q  79 tgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaa-gctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||||| |||||||| |||||||| |||||  |||||||||||| |||||||||| |||||| ||||||||||||||||||| ||||||  |||||||||    
T  41503328 tgaggttcctagattacttgataaaattaagatgttatctttagcgtgactgaaaagctaaacaagccacttttgtttttggaactcagatgtggtggtc 41503427  T
Q  178 aagtccaatggcttgtctgggcattgg 204  Q
    |||||| |||| |||| ||||||||||    
T  41503428 aagtcctatggtttgtttgggcattgg 41503454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 16873864 - 16874024
Alignment:
Q  23 tgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttag 122  Q
    ||||||||| |  ||||||||||| | |||||||| |||||||||||||||||||  || ||||| |  ||||| ||||| |||||||||||||| ||||    
T  16873864 tgtacttggattgtgtggaacgaacgtaataaccgcctgtttaataatgttgtaacggacgtcccgaagttgctggataaaattaaattgttatcattag 16873963  T
Q  123 tgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtcc 183  Q
     ||| |||||||||||||||||||  ||| ||| |||||||||   |||||||||||||||    
T  16873964 ggtggctgaaagctaaaaaagccatgtttatttatggtactcatatgtggtggtcaagtcc 16874024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 49265373 - 49265517
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||||||||  ||||  ||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||    
T  49265373 tgtttaaaaatgttgtaaccgaggctcctagattgcttgataaaattaagttgttatcattagtgtggcttaaagctaaaaatgccacttttgtttttgg 49265472  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattgg 204  Q
     |||||   |||||||||| ||||  | | |||| ||||||||||    
T  49265473 aactcatatgtggtggtcatgtcctttagtttgtttgggcattgg 49265517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 44930025 - 44929835
Alignment:
Q  1 tctacagctactttggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgat 100  Q
    |||||| ||| |||||||  | ||||||| |||  ||||||||||| |||| |||||  ||||||||||| ||||||  || ||| | || ||||| ||     
T  44930025 tctacaactaatttggctcctttgtactttggttttgtggaacgaacgcaacaaccgtatgtttaataatattgtaaccgatgtctc-aggttgctagaa 44929927  T
Q  101 aagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttg 192  Q
    |||||||| | ||||||||||||||| |||||||||| ||||| ||  ||||||||||||||||||  |||||||||||||||  |||||||    
T  44929926 aagattaagtcgttatctttagtgtggctgaaagctataaaagtcatgtttgtttttggtactcagatgtggtggtcaagtcctttggcttg 44929835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 204
Target Start/End: Complemental strand, 39430009 - 39429865
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||||||||  ||||  ||||||||||||| ||| || ||||||||||| |||||||| || ||||||||||| |||||||||||||||||    
T  39430009 tgtttaaaaatgttgtaaccgaggctcctagattgcttgttaaaatcaaattgttatcgttagtgtggcttaaagctaaaaatgccacttttgtttttgg 39429910  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattgg 204  Q
     |||||   ||||||| || ||||  | |||||| ||||||||||    
T  39429909 aactcatatgtggtggccatgtcctttagcttgtttgggcattgg 39429865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 20795399 - 20795250
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| ||||||||||  |||   ||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||| | |||||||||||||||    
T  20795399 tgtttaaaaatgttgtaaccgagactcctagattgcttgataaaattaagttgttatcgttagtgtggcttaaagctaaaaatgtcacttttgtttttgg 20795300  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
     | |||   |||||||||| ||||  | |||||| |||||||||| ||||    
T  20795299 aagtcatatgtggtggtcatgtcctttagcttgtttgggcattggataac 20795250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 34854087 - 34854198
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||| |||||||||||||| ||| ||| |||||||||||||| ||||  ||||||||||||||  ||  |||||||||||||||  | | ||||||||    
T  34854087 gataaggttaaattgttatctctagggtggctgaaagctaaaaaggccatgtttgtttttggtacgtagaggtggtggtcaagtcctttagattgtctgg 34854186  T
Q  198 gcattggctaac 209  Q
    |||||| |||||    
T  34854187 gcattgactaac 34854198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 37530260 - 37530175
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||||| |||| ||| | |||||||  || ||||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  37530260 cttgataaggttaagttgatgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcagcagtggtggtcaag 37530175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 32353741 - 32353826
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||||||||||  |||| ||| |||  ||  |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  32353741 cttgataagattaagctgttgtctctaggttggttgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaag 32353826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 6890901 - 6890965
Alignment:
Q  144 ccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaa 208  Q
    |||||||||||||||  ||||||  ||||||||||||||| |||| |||| ||||| ||||||||    
T  6890901 ccacttttgtttttgaaactcagatgtggtggtcaagtcctatggtttgtttgggctttggctaa 6890965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 6892747 - 6892811
Alignment:
Q  144 ccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaa 208  Q
    |||||||||||||||  ||||||  ||||||||||||||| |||| |||| ||||| ||||||||    
T  6892747 ccacttttgtttttgaaactcagatgtggtggtcaagtcctatggtttgtttgggctttggctaa 6892811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 3692289 - 3692238
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  3692289 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaag 3692238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 48073910 - 48073961
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  48073910 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaag 48073961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 25639941 - 25639990
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtca 178  Q
    ||||||||| |||||| ||||||||||||||||| |||  ||||||||||    
T  25639941 tgaaagctagaaaagctacttttgtttttggtacccagcagtggtggtca 25639990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 4644675 - 4644627
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    ||||||| |||||||| |||||||| ||||||||||||  |||||||||    
T  4644675 tgaaagcaaaaaaagctacttttgtgtttggtactcagcagtggtggtc 4644627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 21527823 - 21527775
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||| ||||||||||| |||||||| ||||||||||||  |||||||||    
T  21527823 tgaaggctaaaaaagctacttttgtgtttggtactcagcagtggtggtc 21527775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 13085270 - 13085121
Alignment:
Q  60 tgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttgg 159  Q
    ||||||| |||||||||| |||||  ||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||| |  ||||||||||||||    
T  13085270 tgtttaaaaatgttgtaactgaggctcctagattgctagataaaattaagttgttatcgttagtgtggctgaaagctaaaaatgtgacttttgtttttgg 13085171  T
Q  160 tactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
     || |||| |||||||| ||||||  ||| |||| |||| ||||||||||    
T  13085170 aacccagttgtggtggttaagtcctttggtttgtttgggaattggctaac 13085121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 33804551 - 33804389
Alignment:
Q  21 tgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatcttt 120  Q
    ||||||||||| |  ||| ||||||| | ||||||||  ||||||||||||||||||  || ||||| || ||| | |||||||||||||||||||| ||    
T  33804551 tgtgtacttggattgtgtagaacgaacgtaataaccgcttgtttaataatgttgtaacggacgtcccaaggttgttggataagattaaattgttatcatt 33804452  T
Q  121 agtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtcc 183  Q
    || ||| || ||||||||||| ||||  ||||||| ||||||||||  |||||||||||||||    
T  33804451 agggtggcttaaagctaaaaatgccatgtttgtttatggtactcagatgtggtggtcaagtcc 33804389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 4474475 - 4474290
Alignment:
Q  14 tggcttttgtgtacttgggtgatgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgt 113  Q
    |||||| | |||||||||||  |||||| |||| | |||||||   ||||||||||||||||||  || |||||||| ||| | ||||||||||||||||    
T  4474475 tggcttctttgtacttgggtcgtgtggaccgaacgtaataaccacatgtttaataatgttgtaacggatgtccctaggttgttggataagattaaattgt 4474376  T
Q  114 tatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattgg 204  Q
    |||| |||  ||| |||||||||||||||||||      ||| ||||||||||  ||||||||||||||| ||||| ||| | ||||||||    
T  4474375 tatccttaaggtggctgaaagctaaaaaagcca-----ttttatggtactcagaggtggtggtcaagtcctatggcatgtttaggcattgg 4474290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 33572629 - 33572757
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| |||||||| |||||||| ||||| |||||||| |||| |||||||||| |||||||  |||||||| ||||||| |||||   |||||||||||    
T  33572629 gaggttcctagattacttgataaaattaagttgttatcattagcgtgactgaaatctaaaaataccacttttctttttggaactcaaatgtggtggtcaa 33572728  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||  |||| |||||||||||||| ||||    
T  33572729 gtcatatggtttgtctgggcattgactaa 33572757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 23066497 - 23066608
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| |     ||||||| |||||| |||  |||||||||||| ||| | | ||||||||    
T  23066497 gataagatcaaattgttatctttagggtggctgaaagctaaaaacgttgtgtttgtttatggtacgcagaggtggtggtcaagcccattagattgtctgg 23066596  T
Q  198 gcattggctaac 209  Q
    ||||||||||||    
T  23066597 gcattggctaac 23066608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 11468343 - 11468199
Alignment:
Q  36 tgtggaacgaaggcaataaccgactgtttaataatgttgtaattgaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagc 135  Q
    ||||||||||| ||| || ||| || || ||||||||| ||   || |||||||| |||||||||||||||||||  |||||  ||| |||  |||| ||    
T  11468343 tgtggaacgaacgcattagccgcctattcaataatgttatacccgatgtccctaggttgcttgataagattaaatctttatccctagcgtggttgaaggc 11468244  T
Q  136 taaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||| ||| |||||||||||||||| |   ||||||||||||    
T  11468243 taaaaaaaccatttttgtttttggtacttaaaggtggtggtcaag 11468199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 31297591 - 31297702
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||| | |||||||||||||||| ||| |||||| ||||||| || |  ||||||| |||||| |||  |||||||||||| ||  | | ||||||||    
T  31297591 gataaggtcaaattgttatctttagagtggctgaaaactaaaaaggcaatgtttgtttatggtacgcagaggtggtggtcaagcccgttagattgtctgg 31297690  T
Q  198 gcattggctaac 209  Q
    ||||||||||||    
T  31297691 gcattggctaac 31297702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 4406705 - 4406594
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||| ||||| |||| |||||||  || ||||||||||| |||||||| |||| |||||||||||||  ||||| ||| || ||  | |||||| |||    
T  4406705 gataaggttaaaatgttgtctttaggttggctgaaagctaagaaagccacatttggttttggtactcagaggtggtagtcgagccctttagcttgtttgg 4406606  T
Q  198 gcattggctaac 209  Q
    |||| |||||||    
T  4406605 gcataggctaac 4406594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 8873270 - 8873355
Alignment:
Q  95 cttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    ||||||||| |||| ||| | |||||||  || ||||||||||||||||| || ||||||||||| |||||   ||||||||||||    
T  8873270 cttgataaggttaagttgatgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcaacagtggtggtcaag 8873355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 23347913 - 23347993
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtca 178  Q
    ||||||||||| ||||| ||| |||  ||  |||||||||||||||| || ||||||||||| ||||||  ||||||||||    
T  23347913 gataagattaagttgttgtctctaggttggttgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtca 23347993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 24749338 - 24749230
Alignment:
Q  101 aagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggca 200  Q
    |||||||||||||||||| ||| ||| |||||| | |||||  |||  ||||||||||| ||||||   || |||||||| ||  | |||||| ||||||    
T  24749338 aagattaaattgttatctctagggtggctgaaaaccaaaaataccatgtttgtttttggcactcagagatgatggtcaagccctttagcttgtttgggca 24749239  T
Q  201 ttggctaac 209  Q
    |||||||||    
T  24749238 ttggctaac 24749230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 6284395 - 6284296
Alignment:
Q  110 ttgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgggcattggctaac 209  Q
    |||||||| ||||||||  |||||||||||||    |||||||||||||  ||||||  ||||||||||||||   ||| |||| ||||||||| |||||    
T  6284395 ttgttatcgttagtgtggttgaaagctaaaaatataacttttgtttttgaaactcagatgtggtggtcaagtcttttggtttgtttgggcattgactaac 6284296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 15673487 - 15673436
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaag 180  Q
    |||||||||||||||| || ||||||||||| ||||||  ||||||||||||    
T  15673487 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaag 15673436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 13755127 - 13755077
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    |||||||||||||||| || ||||||||||| ||||||  |||||||||||    
T  13755127 tgaaagctaaaaaagctacctttgtttttgggactcagcagtggtggtcaa 13755077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 1163 - 1035
Alignment:
Q  80 gaggtccctagattgcttgataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaa 179  Q
    ||||| |||||||| |||||||| ||||| |||||||| |||| |||||||||| |||||||  |||||||| ||||||| |||||   |||||||||||    
T  1163 gaggttcctagattacttgataaaattaagttgttatcattagcgtgactgaaatctaaaaataccacttttctttttggaactcaaatgtggtggtcaa 1064  T
Q  180 gtccaatggcttgtctgggcattggctaa 208  Q
    |||  |||| |||||||||||||| ||||    
T  1063 gtcatatggtttgtctgggcattgactaa 1035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 16355 - 16244
Alignment:
Q  98 gataagattaaattgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtcaagtccaatggcttgtctgg 197  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||  ||||||| ||||||||||  ||||||||||||||| ||| | ||| | |    
T  16355 gataagattaaattgttatcattagggtggctgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaagtcctatgacatgtttag 16256  T
Q  198 gcattggctaac 209  Q
    | ||||||||||    
T  16255 gaattggctaac 16244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 22673 - 22739
Alignment:
Q  111 tgttatctttagtgtgactgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||| |||||||  ||| |||||||||||||| |||||||||| ||||||||||||  |||||||||    
T  22673 tgttgtctttagcttgattgaaagctaaaaaaaccacttttgtgtttggtactcagcagtggtggtc 22739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 135114 - 135162
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||| ||||||||||| |||||||| ||||||||||||  |||||||||    
T  135114 tgaaggctaaaaaagctacttttgtgtttggtactcagcagtggtggtc 135162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 312941 - 312989
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||| ||||||||||| |||||||| ||||||||||||  |||||||||    
T  312941 tgaaggctaaaaaagctacttttgtgtttggtactcagcagtggtggtc 312989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 328395 - 328443
Alignment:
Q  129 tgaaagctaaaaaagccacttttgtttttggtactcagtcgtggtggtc 177  Q
    |||| ||||||||||| |||||||| ||||||||||||  |||||||||    
T  328395 tgaaggctaaaaaagctacttttgtgtttggtactcagcagtggtggtc 328443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University