View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2253_high_23 (Length: 249)

Name: NF2253_high_23
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2253_high_23
NF2253_high_23
[»] chr3 (8 HSPs)
chr3 (1-102)||(10207720-10207821)
chr3 (1-97)||(8512007-8512103)
chr3 (1-97)||(8516887-8516983)
chr3 (1-97)||(2677285-2677382)
chr3 (9-97)||(2673137-2673226)
chr3 (1-97)||(32475276-32475372)
chr3 (1-97)||(32480133-32480230)
chr3 (1-39)||(24967957-24967995)
[»] chr8 (5 HSPs)
chr8 (1-97)||(35745183-35745279)
chr8 (1-97)||(10684462-10684558)
chr8 (9-68)||(39785029-39785087)
chr8 (9-68)||(25328483-25328541)
chr8 (9-67)||(6311121-6311177)
[»] chr6 (12 HSPs)
chr6 (1-97)||(33336141-33336237)
chr6 (1-98)||(6005208-6005305)
chr6 (1-97)||(16838536-16838632)
chr6 (1-97)||(33330644-33330740)
chr6 (1-97)||(5343272-5343368)
chr6 (9-68)||(28184324-28184382)
chr6 (9-97)||(6438294-6438380)
chr6 (9-68)||(14737782-14737839)
chr6 (9-68)||(14742641-14742698)
chr6 (1-68)||(28155768-28155833)
chr6 (9-97)||(11856765-11856851)
chr6 (9-68)||(22010902-22010959)
[»] chr5 (9 HSPs)
chr5 (1-97)||(2785167-2785263)
chr5 (1-97)||(33767971-33768067)
chr5 (1-97)||(33791108-33791204)
chr5 (1-97)||(31397190-31397286)
chr5 (1-97)||(31402047-31402143)
chr5 (1-97)||(37556821-37556918)
chr5 (1-97)||(37561643-37561740)
chr5 (9-97)||(28807780-28807868)
chr5 (1-67)||(27444793-27444857)
[»] scaffold0197 (2 HSPs)
scaffold0197 (1-102)||(19362-19463)
scaffold0197 (1-97)||(14507-14603)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-97)||(149153-149249)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-97)||(2448-2544)
[»] chr1 (7 HSPs)
chr1 (1-97)||(43988663-43988759)
chr1 (9-100)||(25445295-25445385)
chr1 (15-97)||(39445292-39445373)
chr1 (15-98)||(1055223-1055305)
chr1 (9-68)||(41386570-41386628)
chr1 (9-68)||(41398059-41398117)
chr1 (9-68)||(44024078-44024136)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-97)||(182162-182258)
[»] chr7 (8 HSPs)
chr7 (1-97)||(16879864-16879960)
chr7 (1-97)||(16884720-16884816)
chr7 (1-97)||(24266400-24266496)
chr7 (1-97)||(24261521-24261617)
chr7 (9-98)||(19992103-19992192)
chr7 (1-97)||(21812436-21812532)
chr7 (9-68)||(24024533-24024590)
chr7 (9-68)||(31109788-31109845)
[»] chr2 (5 HSPs)
chr2 (1-97)||(19344212-19344308)
chr2 (1-97)||(19349070-19349166)
chr2 (9-99)||(32246575-32246664)
chr2 (9-68)||(39812193-39812251)
chr2 (9-68)||(44312829-44312886)
[»] chr4 (5 HSPs)
chr4 (1-99)||(3813814-3813911)
chr4 (9-97)||(18855519-18855606)
chr4 (9-97)||(45348023-45348109)
chr4 (9-97)||(45357502-45357588)
chr4 (9-97)||(9224612-9224698)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-68)||(9837-9903)
scaffold0355 (24-68)||(101-144)
[»] scaffold0777 (1 HSPs)
scaffold0777 (49-97)||(6293-6341)
[»] scaffold0479 (1 HSPs)
scaffold0479 (9-97)||(13141-13228)
[»] scaffold0464 (1 HSPs)
scaffold0464 (9-97)||(155-242)
[»] scaffold0127 (1 HSPs)
scaffold0127 (9-68)||(34154-34212)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10207821 - 10207720
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaacacta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  10207821 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaata 10207722  T
Q  101 tt 102  Q
    ||    
T  10207721 tt 10207720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8512103 - 8512007
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8512103 catttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 8512007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8516983 - 8516887
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8516983 catttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 8516887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2677285 - 2677382
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaag-ttcattagttgagccggattcacaaca 97  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  2677285 catttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccggattcacaaca 2677382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 2673137 - 2673226
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaag-ttcattagttgagccggattcacaaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  2673137 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccggattcacaaca 2673226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 32475372 - 32475276
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32475372 catttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 32475276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 32480230 - 32480133
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattgg-tttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32480230 catttgcactcatagattacctctatctcttgctccacacatctttggatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 32480133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24967995 - 24967957
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccaca 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24967995 catttgcactcatagattatctctatcacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35745279 - 35745183
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35745279 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 35745183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10684462 - 10684558
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10684462 catttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 10684558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 39785029 - 39785087
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  39785029 ctcattgattatcactatcacttgctccacacatctttggtttatt-tcattggtgtgaa 39785087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 25328483 - 25328541
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| |||||||||||||| |||||||||| |||||| |||||| ||||||    
T  25328483 ctcattgattatcactatcacttgctccgcacatcattgatttatt-tcattgttgtgaa 25328541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 6311177 - 6311121
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 67  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6311177 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 6311121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33336141 - 33336237
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33336141 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 33336237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 6005305 - 6005208
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaacac 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  6005305 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatttacaacac 6005208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16838632 - 16838536
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16838632 catttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 16838536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33330644 - 33330740
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  33330644 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctaattggtgtgaaggttcattagttgagccggattcacaaca 33330740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 5343368 - 5343272
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5343368 catttgcactcatagattatctctatcacttgctccacacatcattgacttattctcattggtgtgaaggttcattagttgagccggattcacaaca 5343272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 28184382 - 28184324
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  28184382 ctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 28184324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 6438380 - 6438294
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||| |||| || || || ||||| ||||||||    
T  6438380 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggttcgtttgtagaaccggaatcacaaca 6438294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 14737782 - 14737839
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||    
T  14737782 ctcattgattatcactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaa 14737839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 14742641 - 14742698
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||    
T  14742641 ctcattgattatcactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaa 14742698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 28155768 - 28155833
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||    
T  28155768 catttgctctcattgattatcactatcacttgctccacacatcatt-gtttatt-gcattggtgtgaa 28155833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 11856851 - 11856765
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||| |||  ||  |||| ||||||||||||||    
T  11856851 ctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaaca 11856765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 22010902 - 22010959
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| |||||||||||||    
T  22010902 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaa 22010959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 2785263 - 2785167
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2785263 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 2785167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 33768067 - 33767971
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  33768067 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattcacaaca 33767971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 33791204 - 33791108
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  33791204 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattcacaaca 33791108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 31397190 - 31397286
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  31397190 catttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattcacaaca 31397286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 31402047 - 31402143
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  31402047 catttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattcacaaca 31402143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 37556821 - 37556918
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa-agttcattagttgagccggattcacaaca 97  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| | || ||||||||| ||||||||||||||    
T  37556821 catttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaagatttgattagttgaaccggattcacaaca 37556918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 37561643 - 37561740
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaag-ttcattagttgagccggattcacaaca 97  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| | || ||||||||| ||||||||||||||    
T  37561643 catttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaaggtttgattagttgaaccggattcacaaca 37561740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 28807780 - 28807868
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaag-ttcattagttgagccggattcacaaca 97  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||||||||||    
T  28807780 ctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaaca 28807868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27444857 - 27444793
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 67  Q
    |||||| |||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  27444857 catttgtactcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 27444793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 19362 - 19463
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaacacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  19362 catttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaacaata 19461  T
Q  101 tt 102  Q
    ||    
T  19462 tt 19463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14507 - 14603
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  14507 catttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaaca 14603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 149153 - 149249
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  149153 catttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 149249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2448 - 2544
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2448 catttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 2544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 43988663 - 43988759
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  43988663 catttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggcgtgaaggttcattagttgagccggattcacaaca 43988759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 25445295 - 25445385
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaacacta 100  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||| || || || |||||||||||||||||    
T  25445295 ctcattgattatcactatcgcttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacacta 25445385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 39445373 - 39445292
Alignment:
Q  15 gattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| || || || ||||||||||||||    
T  39445373 gattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaaca 39445292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 1055223 - 1055305
Alignment:
Q  15 gattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaacac 98  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||  | || || |||||||||||||||    
T  1055223 gattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgattgtagaaccggattcacaacac 1055305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 41386628 - 41386570
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  41386628 ctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 41386570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 41398117 - 41398059
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||    
T  41398117 ctcattgattatcactatcacttgctccacacataattggtttatt-tcattggtgtgaa 41398059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 44024078 - 44024136
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||||||    
T  44024078 ctcattgattatcactatcagttgctccacacatcattggtttatt-tcattggtgtgaa 44024136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 182162 - 182258
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  182162 catttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 182258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16879960 - 16879864
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16879960 catttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 16879864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16884816 - 16884720
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16884816 catttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 16884720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24266400 - 24266496
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24266400 catttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaaca 24266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24261521 - 24261617
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  24261521 catttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaaca 24261617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 19992192 - 19992103
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagtt-cattagttgagccggattcacaacac 98  Q
    ||||| ||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||    
T  19992192 ctcattgattatcactatcacctgctccacacatctttggtttatt-tcattggtgtgaaggttccattagttgaaccggattcacaacac 19992103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 21812436 - 21812532
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaag-ttcattagttgagccggattcacaaca 97  Q
    ||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||  |||||||||||||    
T  21812436 catttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaatcggattcacaaca 21812532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 24024533 - 24024590
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| |||||||||||||    
T  24024533 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaa 24024590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 31109788 - 31109845
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||    
T  31109788 ctcattgattatcactatcacttgctgcacacatcatt-gtttatt-tcattggtgtgaa 31109845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 19344308 - 19344212
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaag-ttcattagttgagccggattcacaaca 97  Q
    ||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||| | |||||||||||| ||||||||||||||    
T  19344308 catttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaaca 19344212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 19349166 - 19349070
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaag-ttcattagttgagccggattcacaaca 97  Q
    ||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||| | |||||||||||| ||||||||||||||    
T  19349166 catttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaaca 19349070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 32246664 - 32246575
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaacact 99  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||  || || || ||||||||||||||||    
T  32246664 ctcatagattaccactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaacact 32246575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 39812193 - 39812251
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  39812193 ctcattgattatcactatcacttgctccacacatctttggtttatt-tcattggtgtgaa 39812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 44312829 - 44312886
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||| |||||||||||||    
T  44312829 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaa 44312886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 3813911 - 3813814
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaacact 99  Q
    ||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||  || || || ||||||||||||||||    
T  3813911 catttgctctcattgattaccactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaacact 3813814  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 18855606 - 18855519
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||  | || || ||||||||||||||    
T  18855606 ctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgcttgtagaaccggattcacaaca 18855519  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 45348023 - 45348109
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||| |||  || || || ||||||||||||||    
T  45348023 ctcatagattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45348109  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 45357502 - 45357588
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||| |||  || || || ||||||||||||||    
T  45357502 ctcatagattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45357588  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 9224612 - 9224698
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||| |||  ||  |||| ||||||||||||||    
T  9224612 ctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaaca 9224698  T

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Target: scaffold0355 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9837 - 9903
Alignment:
Q  1 catttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  9837 catttgctctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 9903  T

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Target: scaffold0355; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 101 - 144
Alignment:
Q  24 tatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||||||||||||||||||||||||||||| | |||||||||||    
T  101 tatcacttgctccacacatcattggtttatt-taattggtgtgaa 144  T

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Target: scaffold0777 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 6341 - 6293
Alignment:
Q  49 tttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6341 tttattctcattggtgtgaaggttcattagttgagccggattcacaaca 6293  T

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Target: scaffold0479 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 13228 - 13141
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||| |||| || || || ||||||||||||||    
T  13228 ctcattgattatcactatcacttgctccacatatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaaca 13141  T

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Target: scaffold0464 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 242 - 155
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaagttcattagttgagccggattcacaaca 97  Q
    ||||| ||||||| | ||||||||||||||||||| |||||||||| ||||||||||||| |||| || || || ||||||||||||||    
T  242 ctcattgattatcaccatcacttgctccacacatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaaca 155  T

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Target: scaffold0127 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 34154 - 34212
Alignment:
Q  9 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 68  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  34154 ctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaa 34212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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