View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_high_24 (Length: 241)
Name: NF2253_high_24
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 28309471 - 28309297
Alignment:
| Q |
43 |
taaatagtatgattaaaaatattaatgttttgttgaaactgaaatataatttataatctgtgacaannnnnnn--aaagtgacttatatattagaatgaa |
140 |
Q |
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| T |
28309471 |
taaatagtatgattaaaaatattaatgttttgttgaaactgatatataatttataatctgtgacaatttttttttaaagtgacttatatattagaatgaa |
28309372 |
T |
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| Q |
141 |
tggagtagaataatattcaaattattcaccataacctcactttacaatgaataatggtgtacaaatcacattttt |
215 |
Q |
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| T |
28309371 |
tggagtagaataatattcaaattcttcaccataacctcactttacaatgaataatggtgtacaaatcacattttt |
28309297 |
T |
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