View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_high_28 (Length: 231)
Name: NF2253_high_28
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 7244984 - 7244788
Alignment:
| Q |
18 |
actaagaattcattaattaaacggcatgtaggccataagattgtaaaggtaggatcccgtcccacagccaatccattcagcttgaaagtcatcgttccga |
117 |
Q |
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| T |
7244984 |
actaagaattctttaattaaacggcatctaggccataagattgtgaaggtaggatcccgccccacagtcaatccatttagctagaaagtcatcgttccga |
7244885 |
T |
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| Q |
118 |
ttttgatcaatccattcagcttgagagctatcactccactttgnnnnnnncttcccaggttttgtttcatcagctgatctcttcaaatgaatcctat |
214 |
Q |
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| T |
7244884 |
ttttgatcaatccattcagcttgagagctatcactccactttgtttttttcttcccaggttttgtttcatcagctgatctcttcaaatgaatcctat |
7244788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 7323254 - 7323357
Alignment:
| Q |
24 |
aattcattaattaaacggcatgt-aggccataagattgtaaaggtaggatcccgtcccacagccaatccattcagcttgaaagtcatcgttccgattttg |
122 |
Q |
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| T |
7323254 |
aattcatagattaaacggcatattaggccatgagattgtgaaggtaggatcccgtcccgcagtcaatccactcagctagaaagtcgtcattccggtcttg |
7323353 |
T |
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| Q |
123 |
atca |
126 |
Q |
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|||| |
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| T |
7323354 |
atca |
7323357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 7323439 - 7323526
Alignment:
| Q |
127 |
atccattcagcttgagagctatcactccactttgnnnnnnncttcccaggttttgtttcatcagctgatctcttcaaatgaatcctat |
214 |
Q |
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| T |
7323439 |
atccactcggcttgaaagctatcactccactttgattttgtcctcccacgttttgtttcatcagccgatcttttcaaatgaatcctat |
7323526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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