View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_high_3 (Length: 433)
Name: NF2253_high_3
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 14948289 - 14948063
Alignment:
| Q |
211 |
agattgattttgtatatttgagagtttgatgtttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaaca |
310 |
Q |
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| T |
14948289 |
agattgattttgtatatttgagagtttgatatttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaaca |
14948190 |
T |
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| Q |
311 |
atgaacaatttcaaatctcaatcttttcaaatattatggaaaatcgtt-------------gtaactctcaagtatactttgttctctttcaagatacaa |
397 |
Q |
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| T |
14948189 |
atgaacaatttcaaatctcaatcttttcaaatattatggaaaatcgttgcctaaggatgaggtaactctcaagtatactttgttctctttcaagatacaa |
14948090 |
T |
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| Q |
398 |
agatgtaccttaccaacatagtattat |
424 |
Q |
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| T |
14948089 |
agatgtaccttaccaacatagtattat |
14948063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 14948793 - 14948701
Alignment:
| Q |
111 |
aatgtcagttggagattgagatttcacgatgggatagctaaagtctttccgcatgtgcagtctgatcaccaccctattattgttcatactgag |
203 |
Q |
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| T |
14948793 |
aatgtcagttggagattgagatttcatgatgggatagctaaagtcttttcgggtgtgcagtatgatcaccaccctattattgttcatactgag |
14948701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 14948923 - 14948838
Alignment:
| Q |
1 |
agaattttaacaatcgaatcaatgacatgaccgtagtttgatggaggttactacaacagggactaagtttacttggaggggacctaagtgga |
92 |
Q |
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| T |
14948923 |
agaattttaacaatcgaatcaatcac-----cgtaggttgatggaagttactacagcagg-actaagtttacttggaggggacctaagtgga |
14948838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 31046270 - 31046212
Alignment:
| Q |
246 |
atttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatc |
304 |
Q |
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| T |
31046270 |
atttggttttgaaaatatgcaatttataaaataatgtcttgaaatcattggagttcatc |
31046212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 29544478 - 29544550
Alignment:
| Q |
239 |
atgtttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaacaa |
311 |
Q |
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| T |
29544478 |
atgtttgattttgttttgaaaatatgcaatttataaaatattgacttagaatcatcagagttcatcacaacaa |
29544550 |
T |
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