View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2253_high_5 (Length: 386)

Name: NF2253_high_5
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2253_high_5
NF2253_high_5
[»] chr7 (17 HSPs)
chr7 (1-200)||(3480708-3480907)
chr7 (2-189)||(18503059-18503247)
chr7 (12-188)||(34703029-34703204)
chr7 (76-195)||(6110132-6110246)
chr7 (306-343)||(35549642-35549679)
chr7 (313-357)||(20954816-20954860)
chr7 (12-162)||(31804788-31804938)
chr7 (306-343)||(48374432-48374469)
chr7 (305-356)||(2520627-2520678)
chr7 (101-189)||(15673034-15673123)
chr7 (305-356)||(17749832-17749883)
chr7 (76-191)||(25102630-25102744)
chr7 (306-356)||(24539115-24539165)
chr7 (102-176)||(32585831-32585904)
chr7 (308-365)||(33852466-33852521)
chr7 (314-343)||(2520738-2520767)
chr7 (308-365)||(35198641-35198697)
[»] chr8 (19 HSPs)
chr8 (217-278)||(35407852-35407913)
chr8 (2-200)||(16295320-16295516)
chr8 (2-200)||(16303022-16303218)
chr8 (76-196)||(32962042-32962161)
chr8 (305-353)||(45218508-45218556)
chr8 (2-196)||(37246151-37246343)
chr8 (77-196)||(15268612-15268730)
chr8 (305-340)||(28485384-28485419)
chr8 (10-188)||(16456490-16456667)
chr8 (308-365)||(29011182-29011239)
chr8 (274-307)||(35407770-35407803)
chr8 (72-196)||(8491071-8491193)
chr8 (2-125)||(11656329-11656452)
chr8 (145-188)||(11657028-11657071)
chr8 (2-189)||(43596825-43597011)
chr8 (305-343)||(1961408-1961446)
chr8 (307-343)||(16983544-16983580)
chr8 (307-343)||(23685277-23685313)
chr8 (14-126)||(40953284-40953396)
[»] chr5 (18 HSPs)
chr5 (2-196)||(29860854-29861047)
chr5 (72-200)||(15922237-15922364)
chr5 (81-196)||(42683974-42684088)
chr5 (2-196)||(7883757-7883950)
chr5 (2-196)||(5868254-5868446)
chr5 (63-200)||(2498918-2499054)
chr5 (307-365)||(7584928-7584986)
chr5 (2-196)||(33007978-33008170)
chr5 (76-177)||(25347119-25347219)
chr5 (2-179)||(33134090-33134265)
chr5 (306-364)||(7585116-7585174)
chr5 (308-343)||(10300053-10300088)
chr5 (306-357)||(20159388-20159439)
chr5 (305-343)||(4714899-4714937)
chr5 (306-340)||(12076055-12076089)
chr5 (4-89)||(8095959-8096044)
chr5 (306-343)||(43461559-43461596)
chr5 (307-343)||(32653077-32653113)
[»] chr2 (15 HSPs)
chr2 (306-365)||(31494335-31494394)
chr2 (71-200)||(37485583-37485711)
chr2 (305-365)||(43400262-43400322)
chr2 (306-357)||(30706406-30706457)
chr2 (76-200)||(40619752-40619875)
chr2 (305-343)||(20459054-20459092)
chr2 (143-200)||(19695488-19695545)
chr2 (306-343)||(31494203-31494240)
chr2 (78-189)||(27338714-27338824)
chr2 (13-189)||(13996146-13996321)
chr2 (143-187)||(41595236-41595280)
chr2 (314-357)||(19193503-19193546)
chr2 (315-343)||(6420456-6420484)
chr2 (143-195)||(13349623-13349675)
chr2 (4-40)||(34355939-34355975)
[»] chr3 (9 HSPs)
chr3 (2-196)||(21748377-21748570)
chr3 (308-365)||(7640589-7640646)
chr3 (12-196)||(28457776-28457954)
chr3 (143-196)||(21495072-21495124)
chr3 (144-200)||(40701149-40701205)
chr3 (166-197)||(30271847-30271878)
chr3 (2-125)||(45853088-45853211)
chr3 (146-191)||(7818541-7818586)
chr3 (307-343)||(20791446-20791482)
[»] chr1 (19 HSPs)
chr1 (2-196)||(28622895-28623088)
chr1 (72-191)||(10306845-10306963)
chr1 (2-188)||(37346994-37347179)
chr1 (81-189)||(49549507-49549614)
chr1 (306-365)||(28274915-28274974)
chr1 (308-365)||(21970272-21970329)
chr1 (307-343)||(4578723-4578759)
chr1 (140-189)||(48527377-48527426)
chr1 (308-343)||(1468603-1468638)
chr1 (106-200)||(19909984-19910075)
chr1 (314-353)||(39019578-39019617)
chr1 (306-356)||(13114662-13114712)
chr1 (314-356)||(26980263-26980305)
chr1 (316-365)||(18157165-18157214)
chr1 (307-343)||(21466614-21466650)
chr1 (307-343)||(22540514-22540550)
chr1 (305-341)||(28218038-28218074)
chr1 (308-340)||(39019720-39019752)
chr1 (305-333)||(47683427-47683455)
[»] scaffold0005 (1 HSPs)
scaffold0005 (308-365)||(296965-297022)
[»] chr4 (18 HSPs)
chr4 (2-193)||(34513736-34513926)
chr4 (2-189)||(45499159-45499345)
chr4 (76-192)||(28115982-28116097)
chr4 (102-196)||(3767722-3767815)
chr4 (143-200)||(21342170-21342227)
chr4 (309-365)||(27654606-27654662)
chr4 (307-365)||(3888739-3888795)
chr4 (306-345)||(19676678-19676717)
chr4 (131-188)||(3692655-3692712)
chr4 (306-343)||(19447282-19447319)
chr4 (306-354)||(26329507-26329555)
chr4 (2-125)||(5787283-5787406)
chr4 (308-343)||(20225350-20225385)
chr4 (309-343)||(5994863-5994897)
chr4 (1-59)||(11138721-11138779)
chr4 (13-155)||(37910656-37910797)
chr4 (309-343)||(51904611-51904645)
chr4 (306-338)||(33788023-33788055)
[»] chr6 (9 HSPs)
chr6 (54-196)||(23404473-23404614)
chr6 (76-186)||(29979453-29979562)
chr6 (2-186)||(9314804-9314986)
chr6 (307-354)||(9839015-9839062)
chr6 (76-197)||(10789479-10789600)
chr6 (308-365)||(25577972-25578029)
chr6 (106-188)||(12255105-12255186)
chr6 (306-343)||(16187427-16187464)
chr6 (305-341)||(34882234-34882270)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3480708 - 3480907
Alignment:
Q  1 aagaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  3480708 aagaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtttatgctcaagataaaaattacaatggcaaatcac 3480807  T
Q  101 gataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3480808 gataagataggaaaatgatttatttctatattatcactatgatgcattaaacatgagatttatgcatgatatgattaatatatcatatcatatctctcta 3480907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 18503059 - 18503247
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgt--tcaagataaaaattacaatggcaaatca 99  Q
    ||||||| | |||||| ||||| ||||||  | |||||| |||||  |||  |||||||| || |||| |  |||||||| |||||||||  | ||||||    
T  18503059 agaatatcaagataattaataaagaatgatcttctaatcccatcagcataatttctaacacagcctatatactcaagatagaaattacaaatgaaaatca 18503158  T
Q  100 cgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatc 189  Q
     |||| |||||||||||| ||||||| |||  |||| || || |||||||||||||| ||||| ||| |||||||||||| |||||||||    
T  18503159 ggataggataggaaaatggtttattt-tatcctatctctttggtgcatcaaacatgatatttaagcaggatatgattaatgtatcatatc 18503247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 34703204 - 34703029
Alignment:
Q  12 gataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacgataagatagg 111  Q
    |||||||||||||||||||  | |||||| ||||| ||||| |||||||  |  ||||  ||| |||| ||||||||| || || ||| |||| ||||||    
T  34703204 gataataaataaggaatgatcttctaatcccatcaggatagtttctaacccaacctatcctcatgatataaattacaaaggaaagtcaggatatgatagg 34703105  T
Q  112 aaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatat 188  Q
    |||||  ||||||| |||  |||   | || ||||||||||||| |||||| ||| |||||||||||| ||||||||    
T  34703104 aaaatagtttattt-tatcatatacttttggtgcatcaaacatgtgatttaagcaggatatgattaatgtatcatat 34703029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 6110246 - 6110132
Alignment:
Q  76 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 175  Q
    |||| ||||||||| || || | | |||| ||||| |||||||||||||| ||| ||||| || |||||||||||||||||||||||   || |||||||    
T  6110246 gatataaattacaaaggaaagttaagataggatagaaaaatgatttattt-tatcttatccctttgatgcatcaaacatgagattta---at-atatgat 6110152  T
Q  176 taatatatcatatcatgtct 195  Q
    |||| ||||| |||||||||    
T  6110151 taatgtatcaaatcatgtct 6110132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 35549642 - 35549679
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35549642 aagagtagtgctagcaacactctcttttcaacactctc 35549679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 20954860 - 20954816
Alignment:
Q  313 gtgctagcaacactctcttttcaacactctccaaaacactcactt 357  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  20954860 gtgctagcaacactctcttttcaacactctctcaaacactcactt 20954816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 31804788 - 31804938
Alignment:
Q  12 gataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacgataagatagg 111  Q
    |||||||||||||||||||||| ||||||   |||  ||||||| ||||  ||| |||  ||||||||||||||| || | ||| ||| |||| |||| |    
T  31804788 gataataaataaggaatgaatttctaatcatgtcataatagattttaacgcagtttatactcaagataaaaattataaagacaattcaggataggataag 31804887  T
Q  112 aaaatgatttatttctatattatcactatgatgcatcaaacatgagattta 162  Q
    |||||| |||||||  || |||||  |    ||||||||||||||||||||    
T  31804888 aaaatggtttattttaatcttatctatcgtgtgcatcaaacatgagattta 31804938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 48374432 - 48374469
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||||||||||||||||||||||||| |||||||||    
T  48374432 aagagtagtgctagcaacactctcttttgaacactctc 48374469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 2520627 - 2520678
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacactctccaaaacactcact 356  Q
    |||||| |||||||| |||||||||||||||||||||||   ||||||||||    
T  2520627 taagaggagtgctaggaacactctcttttcaacactctctccaacactcact 2520678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 15673034 - 15673123
Alignment:
Q  101 gataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatg--atatgattaatatatcatatc 189  Q
    |||| |||||||||||| ||||||| |||  |||| || || |||||||||||||||||||| ||| |  ||||||||||| |||||||||    
T  15673034 gatatgataggaaaatggtttattt-tatcctatctctttggtgcatcaaacatgagatttaagcaggatatatgattaatgtatcatatc 15673123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 17749883 - 17749832
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacactctccaaaacactcact 356  Q
    |||||||||||||||||||||||||||||  ||||||||   ||||||||||    
T  17749883 taagagtagtgctagcaacactctcttttggacactctctctaacactcact 17749832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 25102744 - 25102630
Alignment:
Q  76 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 175  Q
    ||||||||||||||  | || |||||||| |||| |||||| |||||||| |||  ||||  | || |||||||||||||||||||| | |  || ||||    
T  25102744 gataaaaattacaaaagtaattcacgataggatacgaaaataatttattt-tatcctatctatttggtgcatcaaacatgagatttaagtagaatgtgat 25102646  T
Q  176 taatatatcatatcat 191  Q
     |||||||||||||||    
T  25102645 aaatatatcatatcat 25102630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 24539115 - 24539165
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctccaaaacactcact 356  Q
    ||||||||||||||||||||||||||||  ||||||||   ||||||||||    
T  24539115 aagagtagtgctagcaacactctcttttggacactctctctaacactcact 24539165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 32585831 - 32585904
Alignment:
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgatt 176  Q
    ||||||||||||||| |||||||| |||  ||||| | || ||||||||||||||||||||  || |||||||||    
T  32585831 ataagataggaaaattatttattt-tatcatatcattttgttgcatcaaacatgagatttaaacaggatatgatt 32585904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 33852466 - 33852521
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    ||||||||||||||| ||||||||||||||||| ||  ||| ||| ||||||||||||    
T  33852466 gagtagtgctagcaaaactctcttttcaacactttc--aaatacttacttcattattg 33852521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 343
Target Start/End: Complemental strand, 2520767 - 2520738
Alignment:
Q  314 tgctagcaacactctcttttcaacactctc 343  Q
    ||||||||||||||||||||||||||||||    
T  2520767 tgctagcaacactctcttttcaacactctc 2520738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 35198641 - 35198697
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    ||||||||||| |||||||||||| |||||||| ||  ||||| ||||||||||||||    
T  35198641 gagtagtgctaacaacactctcttctcaacactttctcaaaca-tcacttcattattg 35198697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 35407913 - 35407852
Alignment:
Q  217 ggtacagtattacttattattaaataaaagcatagtatactcacattcaacgccaattttga 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35407913 ggtacagtattacttattattaaataaaagcatagtatactcacattcaacgccaattttga 35407852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 16295516 - 16295320
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | | |||| ||||| ||||  ||||||| ||||||||  ||| |||| ||||||||| || || ||| |    
T  16295516 agaatatcaagataataaataaggaatgatcttccaatcccatca-gataatttctaacctagtctatactcaggatataaattacaaaggaaagtcagg 16295418  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctcta 200  Q
    ||| |||||| ||||  ||||||  |||  |||| || |  |||||||||||||| ||||| ||| |||||||||||| |||||||| |||||||||||    
T  16295417 atatgatagggaaattgtttattg-tatgctatctctttagtgcatcaaacatgatatttaagcaggatatgattaatgtatcatattatgtctctcta 16295320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 16303218 - 16303022
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | | |||| ||||| ||||  ||||||| ||||||||  ||| |||| ||||||||| || || ||| |    
T  16303218 agaatatcaagataataaataaggaatgatcttccaatcccatca-gataatttctaacctagtctatactcaggatataaattacaaaggaaagtcagg 16303120  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctcta 200  Q
    ||| |||||| ||||  ||||||  |||  |||| || |  |||||||||||||| ||||| ||| |||||||||||| |||||||| |||||||||||    
T  16303119 atatgatagggaaattgtttattg-tatgctatctctttagtgcatcaaacatgatatttaagcaggatatgattaatgtatcatattatgtctctcta 16303022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 32962161 - 32962042
Alignment:
Q  76 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 175  Q
    |||| ||||||||| || || ||| |||| |||||||||||  ||||||| |||  |||| |  || |||||||||||||||||||| ||| ||||||||    
T  32962161 gatagaaattacaaaggaaagtcaggatatgataggaaaatagtttattt-tattctatcccattggtgcatcaaacatgagatttaagcaggatatgat 32962063  T
Q  176 taatatatcatatcatgtctc 196  Q
    |||| ||||||||||| ||||    
T  32962062 taatgtatcatatcatatctc 32962042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 45218508 - 45218556
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacactctccaaaacactc 353  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  45218508 taagagttgtgctagcaacactctcttttcaacactctcccaaacactc 45218556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 37246343 - 37246151
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | |||||| | ||| ||||  ||||||| ||| ||||  |||||||| ||||||||| || || |||      
T  37246343 agaatatcaagataataaataaggaatgatcttctaatcccctcaggataatttctaacctagcctatactcaagatataaattacaaaggaaagtcaga 37246244  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    ||| | |||| |||||  |||||| |||  ||||  | |  |||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||    
T  37246243 atatg-tagggaaatgggttattt-tatcctatctttttagtgcatcaaacatgatatttaagcaggatatgattaatgtatcatatcatgtctc 37246151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 15268730 - 15268612
Alignment:
Q  77 ataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgatt 176  Q
    ||||||||||||| || || ||  |||| |||||||||||| ||||||| |||  ||||  | || || ||||||||||||||||  ||| |||||||||    
T  15268730 ataaaaattacaaaggaaagtcgggataggataggaaaatggtttattt-tatcctatccatttgttgtatcaaacatgagatttcagcaggatatgatt 15268632  T
Q  177 aatatatcatatcatgtctc 196  Q
    ||| ||||||||| ||||||    
T  15268631 aatgtatcatatcctgtctc 15268612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 28485384 - 28485419
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacact 340  Q
    ||||||||||||||||||||||||||||||||||||    
T  28485384 taagagtagtgctagcaacactctcttttcaacact 28485419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 16456667 - 16456490
Alignment:
Q  10 atgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacgataagata 109  Q
    ||||| ||||||||| |||  |||  |||||  |||||||||  ||||||| |||  |||  ||||||||| ||||||||  |||||||| |||| ||||    
T  16456667 atgatcataaataagaaatatatttttaatcctatcaagataatttctaacgtagcttatactcaagataagaattacaaaagcaaatcaggataggata 16456568  T
Q  110 ggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatat 188  Q
      |||||  ||||||| ||| ||||| || || |||||||||||||| ||||| | |  |||||||| |||||||||||    
T  16456567 aaaaaatagtttattt-tatcttatctctttggtgcatcaaacatgatatttaagtagaatatgattgatatatcatat 16456490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 29011239 - 29011182
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    |||||||| |||||| ||||| ||||||||||||||  ||||||||||||| ||||||    
T  29011239 gagtagtgatagcaatactctattttcaacactctctcaaacactcacttctttattg 29011182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 35407803 - 35407770
Alignment:
Q  274 tttgagaaaaaggatgctggagttatatacgtaa 307  Q
    ||||||||||||||||||||||||||||||||||    
T  35407803 tttgagaaaaaggatgctggagttatatacgtaa 35407770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 8491071 - 8491193
Alignment:
Q  72 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgata 171  Q
    ||||||||||||||||||  |||| | |   |||||||| |||||||||||||| |||  |||| || |||| ||||||| |||| |||||  || ||||    
T  8491071 tcaagataaaaattacaaatgcaagtgagagtaagatag-aaaatgatttattt-tatcatatctctttgatacatcaaatatgatatttaaacaagata 8491168  T
Q  172 tgattaatatatcatatcatgtctc 196  Q
    ||||||||||| ||||| |||||||    
T  8491169 tgattaatataccatattatgtctc 8491193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 11656329 - 11656452
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||||| || ||||||||||||||||  | |||||||||| | ||||  |||||||  |  |||| |||| |||| ||||||||| || || ||| |    
T  11656329 agaatattaagacaataaataaggaatgatcttctaatctcattaggataatttctaacccaacctatattcaggatagaaattacaaaggaaagtcagg 11656428  T
Q  102 ataagataggaaaatgatttattt 125  Q
    ||| ||||| |||||| |||||||    
T  11656429 ataggatagaaaaatggtttattt 11656452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 11657028 - 11657071
Alignment:
Q  145 catcaaacatgagatttatgcatgatatgattaatatatcatat 188  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||    
T  11657028 catcaaacatgagatttaagcaggatatgattaatgtatcatat 11657071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 43597011 - 43596825
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | ||| ||||||||||| |||  | |||||||||||| ||||  || ||||  | |||||  ||| |||| ||||||||| || || ||  |    
T  43597011 agaatataaagattataaataaggagtgatcttctaatctcatcaggataatttttaactcaatctatactcaggatataaattacaaaggaaagtcggg 43596912  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatc 189  Q
    ||| ||||| |||||||||||||| |||  |||| || |  |||||||||||||| ||||| |   |||||||||||| |||||||||    
T  43596911 atatgatagaaaaatgatttattt-tatcctatctctttcgtgcatcaaacatgatatttaagtcggatatgattaatgtatcatatc 43596825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 1961446 - 1961408
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  1961446 taagagtaatgctagcaacactctcttttgaacactctc 1961408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 16983580 - 16983544
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||| |||||||||||||||||||| |||||||||    
T  16983580 agagtaatgctagcaacactctcttttgaacactctc 16983544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 23685313 - 23685277
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  23685313 agagtagtgctagcaccactctcttttgaacactctc 23685277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 40953396 - 40953284
Alignment:
Q  14 taataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacgataagataggaa 113  Q
    |||||||||||||||||  | |||||| ||| |  |||  |||||||  || ||||  ||| |||||||||||||| || || ||| |||| ||||| ||    
T  40953396 taataaataaggaatgatcttctaatcccattataataatttctaacccagcctatactcaggataaaaattacaaaggaaagtcaggatatgatagaaa 40953297  T
Q  114 aatgatttatttc 126  Q
    |||||||||||||    
T  40953296 aatgatttatttc 40953284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 29861047 - 29860854
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | |||||| ||||| ||||  ||||||| ||| ||||  ||| |||| ||||||||| || || ||| |    
T  29861047 agaatatcaagataataaataaggaatgatcttctaatcccatcaggataatttctaacttagcctatactcaggatataaattacaaaggaaagtcatg 29860948  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    ||| |||||| ||||| ||||||| |||  |||| || || |||||||||||||| ||||| |||  ||||||||||| ||||||||||||||||    
T  29860947 atatgatagggaaatggtttattt-tatcctatctctttggtgcatcaaacatgaaatttaagcagaatatgattaatgtatcatatcatgtctc 29860854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 15922237 - 15922364
Alignment:
Q  72 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgata 171  Q
    |||| ||| ||||||||| || || ||| |||| ||||| ||||| |||||||| |||  ||||||| ||||||||||||||||||||||| ||| ||||    
T  15922237 tcaaaatagaaattacaaaggaaagtcatgatatgatagaaaaataatttattt-tatcatatcactttgatgcatcaaacatgagatttaagcaagata 15922335  T
Q  172 tgattaatatatcatatcatgtctctcta 200  Q
    |||||||| ||||||||| ||| ||||||    
T  15922336 tgattaatgtatcatatcctgtatctcta 15922364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 42683974 - 42684088
Alignment:
Q  81 aaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaata 180  Q
    ||||||||| || || ||| |||| ||||| |||||||||||||| ||| ||||| || |||||| | |||||||||||||| ||| ||||||||||||     
T  42683974 aaattacaaaggaaagtcaggatatgatagaaaaatgatttattt-tatcttatccctttgatgcttgaaacatgagatttaagcaggatatgattaatg 42684072  T
Q  181 tatcatatcatgtctc 196  Q
    ||||||||||||||||    
T  42684073 tatcatatcatgtctc 42684088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 7883757 - 7883950
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | |||||| ||||| ||||  ||||||   || ||||  |||  ||| ||||||||| || || |||      
T  7883757 agaatataaagataataaataaggaatgatcttctaatcccatcaggataatttctaatccagcctatactcagaatagaaattacaaaggaaattcaga 7883856  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    ||| |||||||||||| ||||||| |||  |||| || ||||||||||||||| ||||||| ||| |||||||||||| ||||||||| ||||||    
T  7883857 ataggataggaaaatggtttattt-tatcctatccctttgatgcatcaaacataagatttaagcaggatatgattaatgtatcatatcctgtctc 7883950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 5868254 - 5868446
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||| ||||||  | |||| | ||||| ||||| |||||||  || | ||  |||||||| ||||||||| || || ||  |    
T  5868254 agaatatcacgataataaataacgaatgatcttctaacc-catcaggatagtttctaacccagccaatactcaagatagaaattacaaaggaaagtcggg 5868352  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    ||| |||||||||||| ||||||| |||  |||| || || |||||||||||||||||||| | | ||| |||||||||||||||||| ||||||    
T  5868353 ataggataggaaaatggtttattt-tatcctatctctttggtgcatcaaacatgagatttaagtaggatgtgattaatatatcatatcttgtctc 5868446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 2499054 - 2498918
Alignment:
Q  63 agtctatgttcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagattta 162  Q
    ||||||| |||| |||||||||||||| |   | ||| |||||||||| |||||||||||||| ||   |||| ||  | |||||||||||||| |||||    
T  2499054 agtctatattcaggataaaaattacaaagaatagtcaagataagatagaaaaatgatttattt-taccatatctcttgggtgcatcaaacatgatattta 2498956  T
Q  163 tgcatgatatgattaatatatcatatcatgtctctcta 200  Q
     | |  |||||||||||||||||||||| |||||||||    
T  2498955 agtagaatatgattaatatatcatatcacgtctctcta 2498918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 7584986 - 7584928
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||| ||| |||||||    
T  7584986 agagtagtgctagcaacactctgttttcaacactctcccaaatactcgctttattattg 7584928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 33007978 - 33008170
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | |||||| ||||| ||||  |||||||  ||  |||  ||| |||||||||||||| || || ||| |    
T  33007978 agaatatcaagataataaataaggaatgatcttctaatcccatcaggataatttctaacccagcttatactcaggataaaaattacaaaggaaagtcagg 33008077  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    ||| |||| ||||||||||||||| |||  |||| || || |  ||||||| ||| ||||| ||| ||||| |||||| ||||||||| ||||||    
T  33008078 atatgata-gaaaatgatttattt-tatcctatccctttggtctatcaaacgtgatatttaagcaggatataattaatgtatcatatcctgtctc 33008170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 25347119 - 25347219
Alignment:
Q  76 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 175  Q
    |||| ||||||||| || |||||| |||| |||||||||||| ||||||| |||  |||| || || |||||||||||||||||||| | | ||||||||    
T  25347119 gatagaaattacaaaggaaaatcaggatatgataggaaaatggtttattt-tatcctatccctttggtgcatcaaacatgagatttaaggaggatatgat 25347217  T
Q  176 ta 177  Q
    ||    
T  25347218 ta 25347219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 33134265 - 33134090
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | |||||  ||| | ||||  ||||||| ||| ||||  ||| |||| ||||||||| || || ||| |    
T  33134265 agaatatcaagataataaataaggaatgatcttctaattccat-aggataatttctaacctagcctatactcatgatagaaattacaaaggaaagtcagg 33134167  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaat 179  Q
    ||| |||||||||||| ||||||| |||  |||| || || ||||| |||||| ||||||| ||| ||||||||||||    
T  33134166 ataggataggaaaatggtttattt-tatcctatccctttggtgcattaaacataagatttaagcaggatatgattaat 33134090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 7585174 - 7585116
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattatt 364  Q
    ||||||||||||||||  | ||||||||||||||||| | |||||||||||| ||||||    
T  7585174 aagagtagtgctagcactattctcttttcaacactcttccaaacactcactttattatt 7585116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 10300088 - 10300053
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10300088 gagtaatgctagcaacactctcttttcaacactctc 10300053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 20159439 - 20159388
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctccaaaacactcactt 357  Q
    ||||||||||||||||||||| ||| ||||||||||||  ||| ||||||||    
T  20159439 aagagtagtgctagcaacactatctcttcaacactctctcaaatactcactt 20159388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 4714937 - 4714899
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  4714937 taagagtagtgctagcaacactctcttttgaacattctc 4714899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 340
Target Start/End: Original strand, 12076055 - 12076089
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacact 340  Q
    |||||||||||||||||||||||||||| ||||||    
T  12076055 aagagtagtgctagcaacactctcttttgaacact 12076089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 8096044 - 8095959
Alignment:
Q  4 aatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaa 89  Q
    ||||| |||||||||||||  |||||||||  |||||| |||||||||| |||||||  |   ||| |||| ||||||||||||||    
T  8096044 aatatgatgataataaatatagaatgaatttttaatcttatcaagatagtttctaactcaacatatattcaggataaaaattacaa 8095959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 43461559 - 43461596
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  43461559 aagagtagtgctagcaatactcttttttcaacactctc 43461596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 32653113 - 32653077
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||||||||||||||| |||||||| |||||||||    
T  32653113 agagtagtgctagcaacattctcttttgaacactctc 32653077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 31494394 - 31494335
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31494394 aagagtagtgctagcaacactctcttttcaacactctcctaaacactcacttcattattg 31494335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 37485711 - 37485583
Alignment:
Q  71 ttcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgat 170  Q
    |||| |||| ||||||||| || || ||| |||| |||||||||||| ||||||| |||  ||||  | || |||||||||||||||||||| ||| |||    
T  37485711 ttcatgatagaaattacaaaggaaagtcaggatatgataggaaaatggtttattt-tatcatatctttttggtgcatcaaacatgagatttaagcaggat 37485613  T
Q  171 atgattaatatatcatatcatgtctctcta 200  Q
    ||||||||||||| ||||| ||||||||||    
T  37485612 atgattaatatattatatcttgtctctcta 37485583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 43400322 - 43400262
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  43400322 taagagtaatgctagcaacactctcttttcaacactctcctaaacactcattttattattg 43400262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 30706457 - 30706406
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctccaaaacactcactt 357  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  30706457 aagagtagtgctagcaacactctcttttcaacactctctcaaacactcactt 30706406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 40619752 - 40619875
Alignment:
Q  76 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 175  Q
    |||| ||||||| | || || ||| |||| ||||| |||||| ||||||| |||  |||| || || |||||||||||||||||||| ||| ||||||||    
T  40619752 gatagaaattacgaaggaaagtcaggatatgatagaaaaatggtttattt-tatcatatccctttggtgcatcaaacatgagatttaagcaggatatgat 40619850  T
Q  176 taatatatcatatcatgtctctcta 200  Q
    |||| ||||||||| | ||||||||    
T  40619851 taatgtatcatatcctatctctcta 40619875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 20459092 - 20459054
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20459092 taagagtagtgctagcaacactctcttttcaacactctc 20459054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 19695545 - 19695488
Alignment:
Q  143 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctcta 200  Q
    |||||||||||||||||||| | | |||||||||||| ||||||||| ||||||||||    
T  19695545 tgcatcaaacatgagatttacgtaggatatgattaatgtatcatatcctgtctctcta 19695488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 31494203 - 31494240
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31494203 aagagtagtgctagcaacactctcttttcaacactctc 31494240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 27338824 - 27338714
Alignment:
Q  78 taaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgatta 177  Q
    |||||||||||| || || ||| |||| ||||| |||||| ||||||| |||  ||||| | |  |||||||||||||||||||| | | ||||||||||    
T  27338824 taaaaattacaaaggaaagtcaggataggatagaaaaatggtttattt-tatcatatcattttagtgcatcaaacatgagatttaagtaggatatgatta 27338726  T
Q  178 atatatcatatc 189  Q
    || |||||||||    
T  27338725 atgtatcatatc 27338714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 13996146 - 13996321
Alignment:
Q  13 ataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacgataagatagga 112  Q
    ||||||||||||||||||  | |||||| ||||| ||||  |||||||  |   |||  ||| |||| ||||||||| || || ||| |||| ||||| |    
T  13996146 ataataaataaggaatgatcttctaatcccatcaggataatttctaacccaacttatactcaggatagaaattacaaaggaaagtcaggatatgatagaa 13996245  T
Q  113 aaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatc 189  Q
    | ||||||||||| |||  | || || || |||||||||||||||||||| | | ||||| |||||| |||||||||    
T  13996246 acatgatttattt-tatcatgtccctttggtgcatcaaacatgagatttaaggaggatataattaatgtatcatatc 13996321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 41595280 - 41595236
Alignment:
Q  143 tgcatcaaacatgagatttatgcatgatatgattaatatatcata 187  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||    
T  41595280 tgcatcaaacatgagatttaagcacgatatgattaatgtatcata 41595236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 19193503 - 19193546
Alignment:
Q  314 tgctagcaacactctcttttcaacactctccaaaacactcactt 357  Q
    ||||||||||||||||||||||||||||||   |||||||||||    
T  19193503 tgctagcaacactctcttttcaacactctctccaacactcactt 19193546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 343
Target Start/End: Original strand, 6420456 - 6420484
Alignment:
Q  315 gctagcaacactctcttttcaacactctc 343  Q
    |||||||||||||||||||||||||||||    
T  6420456 gctagcaacactctcttttcaacactctc 6420484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 13349623 - 13349675
Alignment:
Q  143 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtct 195  Q
    |||||||||||||||||||| | | ||||| |||||| ||||||||| |||||    
T  13349623 tgcatcaaacatgagatttaagtaggatataattaatgtatcatatcctgtct 13349675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 34355975 - 34355939
Alignment:
Q  4 aatattatgataataaataaggaatgaattgctaatc 40  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  34355975 aatatcatgataataaataaggaatgaatttctaatc 34355939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 21748377 - 21748570
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | ||||||||||||||||||   | |||||||||||| ||||  || ||||  || ||||  | | |||| ||||||||| || ||||||      
T  21748377 agaatatcaagataataaataaggaatggtcttctaatctcatcaggataatttttaacccagcctatacttaggatagaaattacaaaggaaaatcata 21748476  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    ||| |||||||||||| || |||| |||  ||||| | || |||||||||||||||||||| |||  ||||||||||| ||||||||||||||||    
T  21748477 ataggataggaaaatggttaattt-tatcatatcattttggtgcatcaaacatgagatttaagcagaatatgattaatgtatcatatcatgtctc 21748570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 7640589 - 7640646
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||||    
T  7640589 gagtagtgctagtaacactctcttttcaacactctcacaaacactcacttccttattg 7640646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 28457776 - 28457954
Alignment:
Q  12 gataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacgataagatagg 111  Q
    |||||||||||||||||||  | |||||| ||||| ||||  |||||||  |||||     || |||| ||||||||| || || |   ||||||||||     
T  28457776 gataataaataaggaatgatcttctaatcccatcaggataacttctaacccagtct-----caggatagaaattacaaaggaaagttgggataagataga 28457870  T
Q  112 aaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    |||||| ||||||| |||  ||||||| || |||||||||||  ||||||| ||| |||||||||||| ||||||||| ||||||    
T  28457871 aaaatggtttattt-tatcatatcactttggtgcatcaaacacaagatttaagcaggatatgattaatgtatcatatcctgtctc 28457954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 21495124 - 21495072
Alignment:
Q  143 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||||||||    
T  21495124 tgcatcaaacatgagatttaa-caagatatgattaatatatcatatcatgtctc 21495072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 40701149 - 40701205
Alignment:
Q  144 gcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctcta 200  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||||    
T  40701149 gcatcaaacatgagatttaagcaggatatgattaatgtatcatatcctgtctttcta 40701205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 30271847 - 30271878
Alignment:
Q  166 atgatatgattaatatatcatatcatgtctct 197  Q
    ||||||||||||||||||||||||||||||||    
T  30271847 atgatatgattaatatatcatatcatgtctct 30271878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 45853088 - 45853211
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  |  |||||  ||||||||||||| ||||  || ||||  ||| ||||||||||||||||| || |||      
T  45853088 agaatatcacgataataaataaggaatgatattttaatccaatcaagatagattataacccagcctatactcacgataaaaattacaatggaaagtcata 45853187  T
Q  102 ataagataggaaaatgatttattt 125  Q
    ||| || | ||||||| |||||||    
T  45853188 ataggaaaagaaaatggtttattt 45853211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 7818541 - 7818586
Alignment:
Q  146 atcaaacatgagatttatgcatgatatgattaatatatcatatcat 191  Q
    ||||||||||||||||| |||  ||||||||||| |||||||||||    
T  7818541 atcaaacatgagatttaagcagaatatgattaatgtatcatatcat 7818586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 20791482 - 20791446
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  20791482 agagtagtgctagcaccactctcttttgaacactctc 20791446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 28622895 - 28623088
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | |||||||||||| ||||  |||||||| ||  |||  ||| |||||||||||||| || || ||| |    
T  28622895 agaatatcaagataataaataaggaatgatcttctaatctcatcaggataatttctaacacagcttatactcaggataaaaattacaaaggaaagtcagg 28622994  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    ||| ||||| |||||  ||||||| |||  |||| || || |||||||||||||  |||||   | |||||||||||| ||||||||||||||||    
T  28622995 ataggatagaaaaatagtttattt-tattctatccctttggtgcatcaaacatggaatttaaataggatatgattaatgtatcatatcatgtctc 28623088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 10306845 - 10306963
Alignment:
Q  72 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactat--gatgcatcaaacatgagatttatgcatga 169  Q
    |||||||||||||||| | || |||||| ||||  ||||||||||| |||||||   |||| || ||||  |||||||||||||||||||||||| || |    
T  10306845 tcaagataaaaattacgaaggaaaatcatgatataataggaaaatggtttattt---tattctctctatttgatgcatcaaacatgagatttatgaataa 10306941  T
Q  170 tatgattaatatatcatatcat 191  Q
    |||||||||||||| |||||||    
T  10306942 tatgattaatatattatatcat 10306963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 37346994 - 37347179
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | |||||| ||||| ||||  |||||||  |   |||  ||| |||| ||||||||| || |||||| |    
T  37346994 agaatatcaggataataaataaggaatgatcttctaatcccatcatgataatttctaacccatcgtatactcaggatagaaattacaaaggaaaatcagg 37347093  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatat 188  Q
    ||| ||||| |||||| ||||||| |||  |||| || || |||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  37347094 ataggatagaaaaatggtttattt-tatcatatccctttggtgcatcaaacataagatttaagcaagatatgattaatgtatcatat 37347179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 49549614 - 49549507
Alignment:
Q  81 aaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaata 180  Q
    ||||||||| || || ||| |||| |||||| ||||||||||||| |||  |||| || || ||||||||| |||||||||| ||| ||||||||||||     
T  49549614 aaattacaaaggaaagtcaggatatgatagggaaatgatttattt-tatcctatccctttggtgcatcaaatatgagatttaagcaggatatgattaatg 49549516  T
Q  181 tatcatatc 189  Q
    |||||||||    
T  49549515 tatcatatc 49549507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 28274974 - 28274915
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    |||||||||||||| |||||||||||||||||||||||  |||||| ||||| |||||||    
T  28274974 aagagtagtgctagtaacactctcttttcaacactctcttaaacacccactttattattg 28274915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 21970272 - 21970329
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    |||||||||||||||||||||||||| |||| ||||  ||| ||||||||||||||||    
T  21970272 gagtagtgctagcaacactctcttttaaacattctcataaatactcacttcattattg 21970329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 4578759 - 4578723
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||||||||||||||||||||||||||||||||||    
T  4578759 agagtagtgctagcaacactctcttttcaacactctc 4578723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 48527426 - 48527377
Alignment:
Q  140 tgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatc 189  Q
    ||||||||||||||||| ||||| ||| |||||||| |||||||||||||    
T  48527426 tgatgcatcaaacatgaaatttaagcaagatatgataaatatatcatatc 48527377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 1468638 - 1468603
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||||||||||||||||||||| |||||||||||    
T  1468638 gagtagtgctagcaacactctcttgtcaacactctc 1468603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 19910075 - 19909984
Alignment:
Q  106 gataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctcta 200  Q
    ||||| |||||| ||||||| ||| ||||| || ||||||||||||||||| ||||| |||  |||| |||||| ||||||||  ||||||||||    
T  19910075 gatagaaaaatggtttattt-tatcttatctctttgatgcatcaaacatgatatttaagcacaatataattaatgtatcatat--tgtctctcta 19909984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 39019578 - 39019617
Alignment:
Q  314 tgctagcaacactctcttttcaacactctccaaaacactc 353  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  39019578 tgctagcaacactctcttttcaacactctctcaaacactc 39019617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 13114662 - 13114712
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctccaaaacactcact 356  Q
    ||||||||||||||||||||||||||||  ||||||||   ||||||||||    
T  13114662 aagagtagtgctagcaacactctcttttggacactctctctaacactcact 13114712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 26980263 - 26980305
Alignment:
Q  314 tgctagcaacactctcttttcaacactctccaaaacactcact 356  Q
    |||||||||||||||||||||||||||||| | || |||||||    
T  26980263 tgctagcaacactctcttttcaacactctctataatactcact 26980305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 18157214 - 18157165
Alignment:
Q  316 ctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    ||||||||||||||||||||||| ||||  ||| ||||||||| ||||||    
T  18157214 ctagcaacactctcttttcaacattctctcaaatactcacttccttattg 18157165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 21466614 - 21466650
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  21466614 agagtagtgctagcaccactctcttttgaacactctc 21466650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 22540550 - 22540514
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  22540550 agagtagtgctagcaccactctcttttgaacactctc 22540514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 28218038 - 28218074
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacactc 341  Q
    |||||||| |||||||||||||||||||| |||||||    
T  28218038 taagagtaatgctagcaacactctcttttgaacactc 28218074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 39019752 - 39019720
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacact 340  Q
    |||||||||||||||||||||||||| ||||||    
T  39019752 gagtagtgctagcaacactctcttttgaacact 39019720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 47683455 - 47683427
Alignment:
Q  305 taagagtagtgctagcaacactctctttt 333  Q
    |||||||||||||||||||||||||||||    
T  47683455 taagagtagtgctagcaacactctctttt 47683427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 297022 - 296965
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  297022 gagtagtgctagcaacactctcttttcaacactctctcaaacactcacttcattattg 296965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 34513736 - 34513926
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | ||||||||||||| ||||| || |||||| ||||| ||||  |||||||  ||  |||  ||| |||| ||||||||| || || ||| |    
T  34513736 agaatatcaagataataaataagaaatgattttctaatcccatcaggataatttctaacccagcttatactcaggatagaaattacaaaggaaagtcagg 34513835  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgt 193  Q
    ||| ||||| |||||| ||||||| |||  ||||  | || |||||||||||||||||||| ||| ||||| |||||| |||||||||||||    
T  34513836 atatgatagaaaaatggtttattt-tatcctatccatttggtgcatcaaacatgagatttaagcaggatataattaatgtatcatatcatgt 34513926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 45499159 - 45499345
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||| ||||||  | |||||| ||||| ||||| |||||||  || |||| |||| |||| ||||||||| || || ||| |    
T  45499159 agaatatcaagataataaataaagaatgatcttctaatcccatcatgatagtttctaacccagcctatattcaggatataaattacaaaggaaagtcagg 45499258  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatc 189  Q
    ||| |||||  ||||| ||||||| |||  ||||| | || ||||||||||||| |||||| | |  |||||||||||||||||||||    
T  45499259 ataggatagagaaatggtttattt-tatcctatcattttggtgcatcaaacatgtgatttaagaagaatatgattaatatatcatatc 45499345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 28115982 - 28116097
Alignment:
Q  76 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 175  Q
    |||| ||||||||| || || | | |||| |||||||||||| ||||||| ||| ||||||||  | ||||||||| |||||||||| |||| |||||||    
T  28115982 gatagaaattacaaaggaaagttaggataggataggaaaatggtttattt-tatcttatcacttaggtgcatcaaatatgagatttaagcataatatgat 28116080  T
Q  176 taatatatcatatcatg 192  Q
    |||| ||||||||||||    
T  28116081 taatgtatcatatcatg 28116097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 3767815 - 3767722
Alignment:
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    |||||||||  ||||||||||||| |||  ||||||| || |||||||||||||| ||||| ||| |||||||||||| ||||||||||| ||||    
T  3767815 ataagatagagaaatgatttattt-tatcctatcactttggtgcatcaaacatgaaatttaagcaggatatgattaatgtatcatatcatatctc 3767722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 21342170 - 21342227
Alignment:
Q  143 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctcta 200  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||    
T  21342170 tgcatcaaacatgagatttaagcaggatatgattaatgtatcatatcctgtctctcta 21342227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 27654662 - 27654606
Alignment:
Q  309 agtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| || |||||||    
T  27654662 agtagtgctagcaacactctcttttcaacactctctcaaacactcaatttattattg 27654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 3888795 - 3888739
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    ||||||||||||||||||||||  |||||||||||||| |||||| |||||| ||||||    
T  3888795 agagtagtgctagcaacactct--tttcaacactctcccaaacacccacttctttattg 3888739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 19676717 - 19676678
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctcca 345  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  19676717 aagagtagtgctagcaacactatcttttcaacactctcca 19676678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 3692655 - 3692712
Alignment:
Q  131 ttatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatat 188  Q
    ||||| || ||||||||||||||||||||||| | |||||||||  ||||||||||||    
T  3692655 ttatctctttgatgcatcaaacatgagatttaagtatgatatgaacaatatatcatat 3692712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 19447319 - 19447282
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||||||||||||||||||||||||| |||||||||    
T  19447319 aagagtagtgctagcaacactctcttttgaacactctc 19447282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 26329555 - 26329507
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctccaaaacactca 354  Q
    |||||||||||||||||| ||||||||||||||| ||||  ||||||||    
T  26329555 aagagtagtgctagcaacgctctcttttcaacaccctccttaacactca 26329507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 5787283 - 5787406
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  |  ||||| ||||| ||||  |||||||  ||  |||  || | ||| ||||||||| || |||||| |    
T  5787283 agaatatcaagataataaataaggaatgatcttttaatcccatcaggataatttctaactcagcatatactcgacatagaaattacaaaggaaaatcatg 5787382  T
Q  102 ataagataggaaaatgatttattt 125  Q
    ||| ||||||||||||||||||||    
T  5787383 ataggataggaaaatgatttattt 5787406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 20225350 - 20225385
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||||||||||||||||||||||| |||||||||    
T  20225350 gagtagtgctagcaacactctcttttgaacactctc 20225385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 5994863 - 5994897
Alignment:
Q  309 agtagtgctagcaacactctcttttcaacactctc 343  Q
    |||||||||||||||| ||||||||||||||||||    
T  5994863 agtagtgctagcaacagtctcttttcaacactctc 5994897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11138779 - 11138721
Alignment:
Q  1 aagaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaa 59  Q
    |||||||| ||||||||||| ||| ||||||||| |||||  |||||||||| ||||||    
T  11138779 aagaatatcatgataataaacaagaaatgaattgttaatcctatcaagatagtttctaa 11138721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 37910656 - 37910797
Alignment:
Q  13 ataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacgataagatagga 112  Q
    ||||||||||||||||||  | |||||| ||||| ||||  |||||||  ||  |||  ||| |||| |||||||||  | || ||| |||| |||||||    
T  37910656 ataataaataaggaatgatcttctaatcccatcaggataatttctaacccagcttatactcatgatataaattacaaacgaaagtcaggatatgatagga 37910755  T
Q  113 aaatgatttatttctatattatcactatgatgcatcaaacatg 155  Q
    ||||||||||||| |||  |||| || || |||||||||||||    
T  37910756 aaatgatttattt-tatcgtatccctttggtgcatcaaacatg 37910797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 51904611 - 51904645
Alignment:
Q  309 agtagtgctagcaacactctcttttcaacactctc 343  Q
    |||| ||||||||||||||||||||||||||||||    
T  51904611 agtattgctagcaacactctcttttcaacactctc 51904645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 33788055 - 33788023
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaaca 338  Q
    ||||| |||||||||||||||||||||||||||    
T  33788055 aagaggagtgctagcaacactctcttttcaaca 33788023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 23404614 - 23404473
Alignment:
Q  54 ttctaacatagtctatgttcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaaca 153  Q
    ||||||| ||| ||||  |||||||| ||||||||| || || ||| |||| |||| | ||||| ||||||| |||  |||| || || |||||||||||    
T  23404614 ttctaacttagcctatactcaagatataaattacaaaggaaagtcaggatatgatatggaaatggtttattt-tatcctatctctttggtgcatcaaaca 23404516  T
Q  154 tgagatttatgcatgatatgattaatatatcatatcatgtctc 196  Q
    ||| ||||||||| ||||| |||||| ||||||||||||||||    
T  23404515 tgaaatttatgcaggatattattaatgtatcatatcatgtctc 23404473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 29979453 - 29979562
Alignment:
Q  76 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 175  Q
    |||| ||||||||| || ||||||  ||| |||||||||||| ||||||| |||  |||| || || ||||||||||||||||||||  |||||||||||    
T  29979453 gatagaaattacaaaggaaaatcataatatgataggaaaatggtttattt-tatcatatccctttggtgcatcaaacatgagatttaaacatgatatgat 29979551  T
Q  176 taatatatcat 186  Q
    |||| ||||||    
T  29979552 taatgtatcat 29979562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 9314986 - 9314804
Alignment:
Q  2 agaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtctatgttcaagataaaaattacaatggcaaatcacg 101  Q
    ||||||| | |||||||||||||||||||  | ||||||||| || ||||  ||||||   || ||||  ||| |||  ||||||||| || || ||| |    
T  9314986 agaatatcaagataataaataaggaatgatcttctaatctcaccaggataatttctaattcagcctatactcaggattgaaattacaaaggaaagtcagg 9314887  T
Q  102 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcat 186  Q
    ||| |||||||||||| |||||||  ||  ||||  | || |||||||||||||||||||| ||| |||||||||||| ||||||    
T  9314886 ataggataggaaaatggtttattt--atcctatccatttggtgcatcaaacatgagatttaagcaggatatgattaatgtatcat 9314804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 9839062 - 9839015
Alignment:
Q  307 agagtagtgctagcaacactctcttttcaacactctccaaaacactca 354  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||    
T  9839062 agagtagtgctagcaacactctcttttcaacactctctcaaacactca 9839015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 10789479 - 10789600
Alignment:
Q  76 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 175  Q
    |||| ||||||||| || |||||| ||||| ||| ||||||| ||||||| ||| ||||| || |  ||||||||| |||| ||||| |||  |||||||    
T  10789479 gatagaaattacaaaggaaaatcaggataaaataagaaaatggtttatttttatcttatctctctcgtgcatcaaatatgaaatttaagcagaatatgat 10789578  T
Q  176 taatatatcatatcatgtctct 197  Q
    |||| ||||||||  |||||||    
T  10789579 taatgtatcatattctgtctct 10789600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 25577972 - 25578029
Alignment:
Q  308 gagtagtgctagcaacactctcttttcaacactctccaaaacactcacttcattattg 365  Q
    ||||||||||||||| ||||||||||||||||||||  ||  ||||||||||||||||    
T  25577972 gagtagtgctagcaaaactctcttttcaacactctctcaataactcacttcattattg 25578029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 12255186 - 12255105
Alignment:
Q  106 gataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatat 188  Q
    |||||||||||| ||||||| |||   ||| || || |||||||||||||||||||| ||| |||||||||||| ||||||||    
T  12255186 gataggaaaatggtttattt-tatcccatccctttggtgcatcaaacatgagatttaagcaggatatgattaatgtatcatat 12255105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 16187427 - 16187464
Alignment:
Q  306 aagagtagtgctagcaacactctcttttcaacactctc 343  Q
    ||||||| || |||||||||||||||||||||||||||    
T  16187427 aagagtaatgttagcaacactctcttttcaacactctc 16187464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 34882234 - 34882270
Alignment:
Q  305 taagagtagtgctagcaacactctcttttcaacactc 341  Q
    |||||| | ||||||||||||||||||||||||||||    
T  34882234 taagagaaatgctagcaacactctcttttcaacactc 34882270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University