View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_1 (Length: 603)
Name: NF2253_low_1
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 102 - 598
Target Start/End: Original strand, 37614096 - 37614573
Alignment:
| Q |
102 |
cctaccatttaatgagagaagatgttgatataatgatatggatcacatttcttcccatcatctccacaactaaatgaaaatgtatttatttatttttctc |
201 |
Q |
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| T |
37614096 |
cctaccatttaatgagagaagatgttgatataatgatatggatcacatttcttcccatcatctccacaactaaatgaaaatgtatttatttatttt---- |
37614191 |
T |
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| Q |
202 |
tcacccgtgtcttaaaggacaatggcatatgttgaaattaatgggaaatagaagggtactgtcatatgttaacaactatatatgacaccactcttcatcc |
301 |
Q |
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| T |
37614192 |
-------------aaaggacaatggcatatgttgaaattaatgggaaatagaagggtactgtcatatgttaacaactatatatgacaccactcttcatcc |
37614278 |
T |
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| Q |
302 |
ttcaaatatcattcacagccaagtaagtaactcatcatttgatacnnnnnnnnnnnnnnnntgaatcttcttaccgatgagatcagaggcaaatcagagg |
401 |
Q |
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| T |
37614279 |
ttcaaatatcattcacaatcaagtaagtaactcatcatttgatacaaaaaaagaaaaaa--tgaatcttcttaccgatgagatcagaggcaaatcagagg |
37614376 |
T |
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| Q |
402 |
tatacaatggagatgaaatctgccaagcaaagtccaaggaacttctcttggaaataaacctaccaaatggtcttttacctttgaaggacattgaagaatg |
501 |
Q |
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| T |
37614377 |
tatacaatggagatgaaatctgccaagcaaagtccaaggaacttctcttggaaataaacctaccaaatggtcttttacctttgaaggacattgaagaatg |
37614476 |
T |
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| Q |
502 |
tggttatcatagggagagtggttttgtttggcttaagcagaaagcaagctatactcacaagtttgagaaagttgataggcttgtgacctatgctact |
598 |
Q |
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| T |
37614477 |
tggttatcatagggagagtggttttgtttggcttaagcagaaagcaagctatactcacaagtttgagaaagttgataggcttgtgacctatggtact |
37614573 |
T |
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