View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_10 (Length: 354)
Name: NF2253_low_10
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 35147349 - 35147682
Alignment:
| Q |
1 |
atcatattgttatttccgtccccaccaaagacgtttgccatctgccagtcccatttgctctgtcttatgtttgcttcttgccgacctagctaggcggatt |
100 |
Q |
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| T |
35147349 |
atcatattgttatttccgtccccaccaaagacgtttgccatctgccagtcccatttgctctgtcttatgtttgcttcttgccgacctagctaggcggatt |
35147448 |
T |
|
| Q |
101 |
tcactagtacacacaattcattttagaacctttcattttagaaaacttcgaatttaagtacctttttaaggtggcaaaaggtgttagaattcaactaaac |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35147449 |
tcactagtacac--aattcattttagaacctttcattttagaaaacttcgaatttaagtacctttttaaggtggcaaaaggtgttagaattcaactaaac |
35147546 |
T |
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| Q |
201 |
aacccgtttaatccattattttatgcggagttaaatgaggtttccgatcttatcatttaaggtaatttgnnnnnnnattggaaaaaattatctcatttca |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35147547 |
aacctgtttaatccattattttatgcggagttaaatgaggtttccgatcttatcatttaaggtaatttgtttttttattggaaaaaattatctcatttca |
35147646 |
T |
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| Q |
301 |
aattttaaaagaaatactgcaacaattcaagtattt |
336 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
35147647 |
aattttaaaagaaataccgcaacaattcaagtattt |
35147682 |
T |
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