View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_11 (Length: 353)
Name: NF2253_low_11
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 6361072 - 6360748
Alignment:
| Q |
19 |
atagccatatctacattctcatttataacaagtgaatgaatcaacaacaaaggatcaaccattagttgcaactttgcatctatccaaatactgaattgtg |
118 |
Q |
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| T |
6361072 |
atagccatatctacattctcctttataacaagtgaatgaatcaacaacaaaggatcaaccatgagttgcaactttgcatctatccaaatactgaattgtg |
6360973 |
T |
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| Q |
119 |
aatttggaaatagtctatggactaaatattttggtataatcccattcattgctgggctctgatacaaatcatcttttgcaaccttcacaagcctccacac |
218 |
Q |
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| T |
6360972 |
aatttggaaatagtctatggattaaatattttggtataatcccattcattgctgggctctgatacaaatcatcttttgcaaccttcacaagcctccacac |
6360873 |
T |
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| Q |
219 |
acctatcttgtattcttgggattttattgaaatcattccatgatgttctaaacctttgagggtaacatcgtccacaaacatgaagaaacacacattttct |
318 |
Q |
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| T |
6360872 |
acctatcttgtattcttgggattttattgaaatcattccatgatgttctaaacctttgagggtaacatcgtccacaaacatgaagaaacacacattttct |
6360773 |
T |
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| Q |
319 |
agtgttttggttccaagtccctttg |
343 |
Q |
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| T |
6360772 |
agtgttttgattccaagtccctttg |
6360748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 120 - 286
Target Start/End: Original strand, 13033761 - 13033927
Alignment:
| Q |
120 |
atttggaaatagtctatggactaaatattttggtataatcccattcattgctgggctctgatacaaatcatcttttgcaaccttcacaagcctccacaca |
219 |
Q |
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|||||||||||||||||||| |||||||||| |||||||| |||||| || | |||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
13033761 |
atttggaaatagtctatggattaaatatttttgtataatcatattcatcacttgattctgttacaaatcatcttttgcaaccttcacaatcctctacaca |
13033860 |
T |
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| Q |
220 |
cctatcttgtattcttgggattttattgaaatcattccatgatgttctaaacctttgagggtaacat |
286 |
Q |
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| T |
13033861 |
cctatcttgtttgctttggattttattaaaattactccatggtgttcaagacctttgagggtaacat |
13033927 |
T |
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