View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2253_low_12 (Length: 345)

Name: NF2253_low_12
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2253_low_12
NF2253_low_12
[»] chr6 (36 HSPs)
chr6 (11-326)||(12627326-12627658)
chr6 (31-117)||(21924910-21924996)
chr6 (40-132)||(9025449-9025546)
chr6 (40-97)||(7265588-7265645)
chr6 (26-92)||(26562682-26562748)
chr6 (40-97)||(19040359-19040416)
chr6 (40-132)||(7938123-7938215)
chr6 (25-84)||(9195762-9195821)
chr6 (41-91)||(5462694-5462744)
chr6 (40-94)||(32511664-32511718)
chr6 (40-97)||(7377986-7378043)
chr6 (40-97)||(13851743-13851800)
chr6 (41-97)||(31579222-31579276)
chr6 (41-97)||(5732505-5732561)
chr6 (40-84)||(7086802-7086846)
chr6 (40-92)||(7151419-7151471)
chr6 (40-84)||(30866152-30866196)
chr6 (41-84)||(9617442-9617485)
chr6 (42-93)||(9629392-9629443)
chr6 (49-84)||(11591878-11591913)
chr6 (26-97)||(33001284-33001355)
chr6 (40-86)||(7248365-7248411)
chr6 (31-81)||(7996389-7996439)
chr6 (31-81)||(8022362-8022412)
chr6 (44-82)||(13360382-13360420)
chr6 (43-97)||(13364700-13364754)
chr6 (41-86)||(7569174-7569219)
chr6 (40-97)||(8776968-8777025)
chr6 (19-92)||(8931602-8931675)
chr6 (40-81)||(34073358-34073399)
chr6 (40-97)||(34595141-34595198)
chr6 (40-84)||(9027185-9027229)
chr6 (40-80)||(9658886-9658926)
chr6 (40-84)||(10842539-10842583)
chr6 (40-84)||(19044471-19044515)
chr6 (40-84)||(26178689-26178733)
[»] chr1 (42 HSPs)
chr1 (40-131)||(12443422-12443512)
chr1 (25-132)||(13436450-13436558)
chr1 (40-84)||(20157358-20157402)
chr1 (40-97)||(40181878-40181935)
chr1 (41-97)||(1864875-1864931)
chr1 (40-92)||(6427357-6427409)
chr1 (40-84)||(7918219-7918263)
chr1 (16-84)||(38503303-38503371)
chr1 (51-98)||(30749858-30749905)
chr1 (51-98)||(30771309-30771356)
chr1 (40-86)||(36906004-36906050)
chr1 (40-97)||(9709827-9709884)
chr1 (40-97)||(14332637-14332694)
chr1 (43-84)||(25098563-25098604)
chr1 (43-84)||(25361896-25361937)
chr1 (40-132)||(25452110-25452200)
chr1 (26-91)||(27471567-27471632)
chr1 (26-75)||(34298429-34298478)
chr1 (40-97)||(36878468-36878525)
chr1 (41-86)||(42325568-42325613)
chr1 (43-84)||(44482240-44482281)
chr1 (40-84)||(10233260-10233304)
chr1 (40-84)||(17831539-17831583)
chr1 (43-83)||(19324572-19324612)
chr1 (40-84)||(34371721-34371764)
chr1 (40-96)||(38075966-38076022)
chr1 (40-92)||(40285654-40285706)
chr1 (40-75)||(31015050-31015085)
chr1 (26-84)||(19562629-19562687)
chr1 (40-94)||(35999320-35999374)
chr1 (11-97)||(52903227-52903313)
chr1 (41-132)||(2288129-2288218)
chr1 (40-73)||(2896140-2896173)
chr1 (40-81)||(5898277-5898318)
chr1 (40-97)||(39953141-39953198)
chr1 (40-84)||(398773-398817)
chr1 (40-84)||(1486717-1486761)
chr1 (40-84)||(9828051-9828095)
chr1 (40-84)||(10572597-10572641)
chr1 (52-84)||(17705594-17705626)
chr1 (40-76)||(26238128-26238164)
chr1 (41-97)||(28674808-28674864)
[»] chr8 (28 HSPs)
chr8 (40-97)||(34897092-34897149)
chr8 (26-97)||(13844591-13844662)
chr8 (26-132)||(27213540-27213640)
chr8 (26-97)||(31236572-31236643)
chr8 (40-97)||(3025558-3025615)
chr8 (41-94)||(4786336-4786389)
chr8 (40-113)||(4948659-4948731)
chr8 (41-86)||(11803267-11803312)
chr8 (41-97)||(12985400-12985456)
chr8 (40-80)||(14134706-14134746)
chr8 (40-84)||(14731719-14731763)
chr8 (40-84)||(24362210-24362254)
chr8 (27-82)||(4611528-4611583)
chr8 (41-84)||(11927094-11927137)
chr8 (41-100)||(18646180-18646239)
chr8 (40-75)||(37283827-37283862)
chr8 (40-83)||(39954288-39954331)
chr8 (41-95)||(31580124-31580178)
chr8 (51-97)||(38079017-38079063)
chr8 (26-91)||(12559107-12559171)
chr8 (39-84)||(20679403-20679448)
chr8 (51-84)||(26902183-26902216)
chr8 (42-75)||(40332200-40332233)
chr8 (40-80)||(7658470-7658510)
chr8 (24-84)||(11944656-11944716)
chr8 (40-84)||(12606837-12606881)
chr8 (40-80)||(13203648-13203688)
chr8 (40-72)||(18067954-18067986)
[»] chr5 (25 HSPs)
chr5 (40-97)||(34879357-34879414)
chr5 (40-97)||(30502383-30502440)
chr5 (40-97)||(30542726-30542783)
chr5 (40-84)||(6471897-6471941)
chr5 (41-97)||(28588669-28588725)
chr5 (40-92)||(41091257-41091309)
chr5 (40-132)||(6247629-6247725)
chr5 (41-98)||(17925166-17925223)
chr5 (40-97)||(21576740-21576797)
chr5 (40-84)||(3966510-3966554)
chr5 (44-83)||(24273039-24273078)
chr5 (44-83)||(24389136-24389175)
chr5 (26-81)||(35017030-35017085)
chr5 (40-86)||(17593728-17593774)
chr5 (43-97)||(18421836-18421890)
chr5 (41-98)||(2548395-2548452)
chr5 (40-97)||(21191051-21191108)
chr5 (44-97)||(21194200-21194253)
chr5 (49-90)||(23015991-23016032)
chr5 (51-84)||(39758290-39758323)
chr5 (44-132)||(6326257-6326345)
chr5 (53-97)||(14422922-14422966)
chr5 (43-75)||(19438353-19438385)
chr5 (40-84)||(27144470-27144514)
chr5 (40-92)||(39205887-39205939)
[»] chr2 (29 HSPs)
chr2 (273-329)||(1254245-1254301)
chr2 (40-97)||(5367199-5367256)
chr2 (40-97)||(37411239-37411296)
chr2 (40-84)||(21616769-21616813)
chr2 (16-84)||(23718009-23718077)
chr2 (16-84)||(24105681-24105749)
chr2 (51-97)||(20242722-20242768)
chr2 (26-75)||(21782835-21782884)
chr2 (40-97)||(34691800-34691857)
chr2 (40-97)||(34714212-34714269)
chr2 (41-97)||(5473336-5473392)
chr2 (40-84)||(18889599-18889643)
chr2 (40-92)||(29970549-29970601)
chr2 (26-114)||(42832254-42832342)
chr2 (40-84)||(44860327-44860371)
chr2 (41-104)||(12748692-12748754)
chr2 (49-84)||(32749833-32749868)
chr2 (41-84)||(35449521-35449564)
chr2 (41-84)||(39279683-39279726)
chr2 (41-99)||(23921261-23921319)
chr2 (40-82)||(28677916-28677958)
chr2 (26-84)||(31808070-31808128)
chr2 (41-82)||(36281693-36281734)
chr2 (26-98)||(896204-896276)
chr2 (41-73)||(2331802-2331834)
chr2 (40-84)||(18276528-18276572)
chr2 (40-92)||(18622613-18622665)
chr2 (36-84)||(30471041-30471089)
chr2 (40-92)||(30717530-30717582)
[»] scaffold0020 (1 HSPs)
scaffold0020 (25-84)||(135320-135379)
[»] chr7 (30 HSPs)
chr7 (26-97)||(20549784-20549855)
chr7 (40-84)||(22868049-22868093)
chr7 (16-75)||(29787386-29787445)
chr7 (40-97)||(3721100-3721157)
chr7 (40-97)||(25481909-25481966)
chr7 (40-92)||(6630912-6630964)
chr7 (43-95)||(9482944-9482996)
chr7 (44-92)||(17307904-17307952)
chr7 (40-84)||(17851438-17851482)
chr7 (40-96)||(32287459-32287515)
chr7 (40-84)||(32308127-32308171)
chr7 (40-75)||(2424621-2424656)
chr7 (49-84)||(22602718-22602753)
chr7 (41-92)||(35297672-35297723)
chr7 (41-83)||(16341504-16341546)
chr7 (51-97)||(18213028-18213074)
chr7 (19-97)||(21826259-21826337)
chr7 (40-114)||(28155577-28155651)
chr7 (51-97)||(39138462-39138508)
chr7 (41-86)||(5233637-5233682)
chr7 (43-84)||(5548686-5548727)
chr7 (41-98)||(12278843-12278899)
chr7 (40-97)||(21880159-21880216)
chr7 (40-97)||(26733311-26733368)
chr7 (42-75)||(30731046-30731079)
chr7 (40-84)||(5835254-5835298)
chr7 (40-84)||(19206057-19206101)
chr7 (40-84)||(19992008-19992052)
chr7 (81-121)||(23746967-23747007)
chr7 (41-97)||(38143231-38143287)
[»] chr3 (31 HSPs)
chr3 (41-92)||(16192750-16192801)
chr3 (40-97)||(7928457-7928514)
chr3 (28-85)||(11313807-11313864)
chr3 (40-81)||(11493372-11493413)
chr3 (40-97)||(45451560-45451617)
chr3 (26-97)||(8789545-8789616)
chr3 (51-121)||(13414487-13414557)
chr3 (19-97)||(25093488-25093566)
chr3 (40-97)||(8383264-8383321)
chr3 (40-97)||(49505149-49505206)
chr3 (40-92)||(3164025-3164077)
chr3 (49-97)||(6780414-6780462)
chr3 (40-80)||(10690274-10690314)
chr3 (39-83)||(14618787-14618831)
chr3 (41-97)||(20691327-20691383)
chr3 (40-92)||(25948887-25948939)
chr3 (26-90)||(29508437-29508501)
chr3 (53-97)||(40993330-40993374)
chr3 (40-75)||(11251985-11252020)
chr3 (41-84)||(32804548-32804591)
chr3 (40-90)||(1438811-1438861)
chr3 (45-83)||(4704301-4704339)
chr3 (40-82)||(12704014-12704056)
chr3 (87-132)||(8789492-8789537)
chr3 (40-81)||(9624648-9624689)
chr3 (40-97)||(10954959-10955016)
chr3 (51-96)||(35222956-35223001)
chr3 (40-84)||(8039843-8039887)
chr3 (40-92)||(10455797-10455849)
chr3 (44-92)||(15314876-15314924)
chr3 (40-84)||(34307788-34307832)
[»] chr4 (22 HSPs)
chr4 (40-85)||(36635331-36635376)
chr4 (36-138)||(17425345-17425445)
chr4 (41-132)||(22440561-22440651)
chr4 (41-82)||(903930-903971)
chr4 (40-97)||(8423713-8423770)
chr4 (40-93)||(15029772-15029825)
chr4 (40-97)||(54580018-54580075)
chr4 (49-117)||(10499246-10499313)
chr4 (43-91)||(18576038-18576086)
chr4 (40-84)||(40613457-40613501)
chr4 (42-86)||(46180942-46180986)
chr4 (41-84)||(5775366-5775409)
chr4 (40-98)||(33950143-33950201)
chr4 (51-92)||(13134468-13134509)
chr4 (40-97)||(16189716-16189773)
chr4 (41-86)||(20743284-20743329)
chr4 (40-84)||(6933282-6933326)
chr4 (42-82)||(9996849-9996889)
chr4 (36-84)||(30103365-30103412)
chr4 (53-97)||(40179631-40179675)
chr4 (49-96)||(42014974-42015022)
chr4 (41-97)||(48139272-48139328)
[»] scaffold0123 (1 HSPs)
scaffold0123 (40-84)||(44533-44577)
[»] scaffold0036 (1 HSPs)
scaffold0036 (40-84)||(9755-9799)
[»] scaffold0022 (1 HSPs)
scaffold0022 (41-97)||(90851-90907)
[»] scaffold0044 (1 HSPs)
scaffold0044 (42-84)||(53189-53231)
[»] scaffold0050 (1 HSPs)
scaffold0050 (41-97)||(70286-70342)
[»] scaffold0008 (1 HSPs)
scaffold0008 (40-84)||(263380-263424)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 12627658 - 12627326
Alignment:
Q  11 cagagacggacagtaacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacacc------------ 98  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||                
T  12627658 cagacacggacagtaacacaccgaaactcctaataatgtgaaaaaatcacataattcagtgtaataatatgtgtcgatgtcggacaccacacatgtccga 12627559  T
Q  99 ----gagacactcctaatccgagaagtatcagtgctt-cgtattaaaacactttgattaattacgaaacttagaattatgatcagtggtgaccctctgag 193  Q
        ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12627558 caccgagacactcctaatccgagaaatatcagtgctttcgtattaaaacactttgattaattacgaaacttagaattatgatcagtggtgaccctctgag 12627459  T
Q  194 catggtaactcaaaatatcatattacgtaagtgcagaaaacctatggaaattgttttggagaagagaaagagagtgaaggtaccttgttaacagcagaac 293  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12627458 catggtaactcaaattctcatattacgtaagtgcagaaaacctatggaaattgttttggagaagagaaagagagtgaaggtaccttgttaacagcagaac 12627359  T
Q  294 aaacaaatttgcaaccaagaacaatgttattaa 326  Q
    |||||||||||||||||||||||||||||||||    
T  12627358 aaacaaatttgcaaccaagaacaatgttattaa 12627326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 21924996 - 21924910
Alignment:
Q  31 ccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgag 117  Q
    |||| ||| |||||||| |||||| |||| ||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||||    
T  21924996 ccgacactgctaataatttgagaatatcaaataattcagtgtaattatatgtgtcggtgtcggacaccgggacacgcctaatccgag 21924910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 9025546 - 9025449
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg-----gacaccgagacactcctaatccgagaagtatcagtgcttc 132  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| | |||||     ||||||| ||||| ||||||||||||||| || |||||||    
T  9025546 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttc 9025449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 7265645 - 7265588
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  7265645 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 26562682 - 26562748
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||| |||| ||| |||| ||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  26562682 acacgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcg 26562748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 19040359 - 19040416
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||   ||||||||||    
T  19040359 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggacac 19040416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 7938123 - 7938215
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgagaagtatcagtgcttc 132  Q
    |||||||| ||| ||||||| |||||| |||||||| ||| |||| | |||| ||||||||||||| ||| ||||||| ||| || |||||||    
T  7938123 ctaataatttgaaaaaatcatataatttagtgtaattataagtgtcggtgtccgacaccgagacacgcctgatccgaggagtgtccgtgcttc 7938215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 9195821 - 9195762
Alignment:
Q  25 aacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||| ||| |||||||||||| ||||||||| |||||||| |||||||| ||||||||    
T  9195821 aacacatcgacactcctaataatttgagaaaatgacataatttagtgtaattatatgtgt 9195762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 5462694 - 5462744
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtc 91  Q
    ||||||| |||||||||||||||||||| |||||| |||| ||||||||||    
T  5462694 taataatttgagaaaatcacataattcattgtaattatatatgttgatgtc 5462744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 32511718 - 32511664
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcgga 94  Q
    |||||||| | ||||||||||||||||||||||||| ||| |||||| |||||||    
T  32511718 ctaataatttaagaaaatcacataattcagtgtaattataagtgttggtgtcgga 32511664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 7377986 - 7378043
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| ||| |||||||||||||||||||| |||||| |||||||| | ||||||||||    
T  7377986 ctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacac 7378043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 13851743 - 13851800
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||| || |||||||||||||| |||||||| |||||| |||||    
T  13851743 ctaataatttgagaaaataacgtaattcagtgtaattatatgtgtcgatgtctgacac 13851800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 31579276 - 31579222
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| |||||||||||||||||||||||||||  ||||||| | ||||||||||    
T  31579276 taataatttgagaaaatcacataattcagtgtaat--tatgtgtcggtgtcggacac 31579222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 5732561 - 5732505
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||||||||||||||| || |||||||| |||||||| | ||||||||||    
T  5732561 taataatttgagaaaatcacatattttagtgtaattatatgtgtcggtgtcggacac 5732505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 7086802 - 7086846
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||    
T  7086802 ctaataatttgagaaaatcacataatttagtgtaattatatgtgt 7086846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 7151419 - 7151471
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| ||| |||||||||||||| |||||||| |||||||||| |||||    
T  7151419 ctaataatttgaaaaaatcacataattaagtgtaattatatgtgttggtgtcg 7151471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 30866196 - 30866152
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||||||||||||||| |||||| ||||||||    
T  30866196 ctaataatttgagaaaatcacataattcaatgtaattatatgtgt 30866152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 9617442 - 9617485
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgt 9617485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 9629392 - 9629443
Alignment:
Q  42 aataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcgg 93  Q
    |||||| |||||||||||||||||||| |||||| |||||||| | ||||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcgg 9629443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 11591913 - 11591878
Alignment:
Q  49 tgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||||||||||||||||||||||| ||||||||    
T  11591913 tgagaaaatcacataattcagtgtaattatatgtgt 11591878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 33001355 - 33001284
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| |||| ||| |||||||| ||| |||||||||||||| | |||||| |||||||| | ||||||||||    
T  33001355 acacgccgacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgtcggacac 33001284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 7248365 - 7248411
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttg 86  Q
    |||||||| |||| |||||||||||||||| ||||| ||||||||||    
T  7248365 ctaataatctgaggaaatcacataattcagggtaattatatgtgttg 7248411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 7996439 - 7996389
Alignment:
Q  31 ccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatg 81  Q
    |||| ||| |||||||| ||||||||||| ||||||||||||||| |||||    
T  7996439 ccgacactgctaataatttgagaaaatcatataattcagtgtaattatatg 7996389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 8022362 - 8022412
Alignment:
Q  31 ccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatg 81  Q
    |||| ||| |||||||| ||||||||||| ||||||||||||||| |||||    
T  8022362 ccgacactgctaataatttgagaaaatcatataattcagtgtaattatatg 8022412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 13360420 - 13360382
Alignment:
Q  44 taatgtgagaaaatcacataattcagtgtaataatatgt 82  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  13360420 taatttgagaaaatcacataattcagtgtaattatatgt 13360382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 13364754 - 13364700
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||| ||||||||||| ||||||||||||||| |||||||| | ||| ||||||    
T  13364754 ataatttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttggacac 13364700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 7569219 - 7569174
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttg 86  Q
    ||||||| ||||||||| ||||||||||||||||| ||| ||||||    
T  7569219 taataatttgagaaaattacataattcagtgtaattataggtgttg 7569174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 8777025 - 8776968
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||||| ||||||||||||| | | |||||| ||||||||||    
T  8777025 ctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgttggtgtcggacac 8776968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 8931675 - 8931602
Alignment:
Q  19 gacagtaacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    ||||| ||||| |||| ||  |||| ||| ||||||||| |||||||||||| |||| |||||||| |||||||    
T  8931675 gacagaaacacgccgacacagctaaaaatttgagaaaataacataattcagtataattatatgtgtcgatgtcg 8931602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 34073399 - 34073358
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatg 81  Q
    |||||||| |||||||||| |||||||||||||||| |||||    
T  34073399 ctaataatttgagaaaatctcataattcagtgtaattatatg 34073358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 34595141 - 34595198
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||||||||||||||||||| | | |||| | ||||||||||    
T  34595141 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 34595198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 9027185 - 9027229
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||| ||||||||||||| ||||||| ||||||||    
T  9027185 ctaataatttgagataatcacataattccgtgtaattatatgtgt 9027229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 9658886 - 9658926
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatat 80  Q
    |||||||| | ||||||||||||||||||||||||| ||||    
T  9658886 ctaataatttaagaaaatcacataattcagtgtaattatat 9658926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 10842539 - 10842583
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||| |||||||||||||| |||||||| ||||||||    
T  10842539 ctaataatttgaaaaaatcacataatttagtgtaatcatatgtgt 10842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 19044471 - 19044515
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||| ||||||||||||||||| || ||||||||    
T  19044471 ctaataatttgagaatatcacataattcagtgttattatatgtgt 19044515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 26178733 - 26178689
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||| |||||||||||||| |||||||| ||||||||    
T  26178733 ctaataatttgataaaatcacataatttagtgtaatcatatgtgt 26178689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 12443512 - 12443422
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgagaagtatcagtgctt 131  Q
    |||||||| |||||||||||||||||||||||||||  ||||||  | |||||||||||||||||| |||||||||||  ||||| ||||||    
T  12443512 ctaataatttgagaaaatcacataattcagtgtaattgtatgtgacg-tgtcggacaccgagacacacctaatccgaggggtatccgtgctt 12443422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 13436450 - 13436558
Alignment:
Q  25 aacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgag-acactcctaatccgagaagtat 123  Q
    ||||| |||| ||| |||||||| | || |||||||||||||||||||||| |||||||||| ||||||||||  || ||||  |||||||||||||| |    
T  13436450 aacacgccgacactgctaataatttaaggaaatcacataattcagtgtaattatatgtgttggtgtcggacacgtagaacacgactaatccgagaagtgt 13436549  T
Q  124 cagtgcttc 132  Q
    | |||||||    
T  13436550 ccgtgcttc 13436558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 20157402 - 20157358
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  20157402 ctaataatgtgagaaaatcacataattcagtgtaatcatatgtgt 20157358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 40181878 - 40181935
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||||||||||||||||||||| |||||| | | ||||||||||    
T  40181878 ctaataatttgagaaaatcacataattcagtgtaattatatgtatcggtgtcggacac 40181935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 1864931 - 1864875
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| | ||| ||||||    
T  1864931 taataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgttggacac 1864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 6427357 - 6427409
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||| |||||    
T  6427357 ctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcg 6427409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 7918263 - 7918219
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  7918263 ctaataatttgagaaaatcacataattcagtgtaattatatgtgt 7918219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 38503303 - 38503371
Alignment:
Q  16 acggacagtaacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||| ||||||||||| ||  |||||||| ||||||||||| ||| ||||||||||| ||||||||    
T  38503303 acggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgt 38503371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 30749858 - 30749905
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgttgatgtcggacacc 98  Q
    ||||||||||||||||||||||||| |||||||| | |||||||||||    
T  30749858 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacc 30749905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 30771309 - 30771356
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgttgatgtcggacacc 98  Q
    ||||||||||||||||||||||||| |||||||| | |||||||||||    
T  30771309 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacc 30771356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 36906004 - 36906050
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttg 86  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  36906004 ctaataatctgagaaaatcacataattcagagtaattatatgtgttg 36906050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 9709827 - 9709884
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| |||||||||||||||||||  |||||| |||||||| | ||||||||||    
T  9709827 ctaataatttgagaaaatcacataattcgttgtaattatatgtgtcggtgtcggacac 9709884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 14332694 - 14332637
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| |||||||||||||||||| |||||||| |||||| | | ||||||||||    
T  14332694 ctaataatttgagaaaatcacataatttagtgtaattatatgtctcggtgtcggacac 14332637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 25098604 - 25098563
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  25098604 ataatttgagaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 25361896 - 25361937
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  25361896 ataatttgagaaaatcacataattcagtgtaattatatgtgt 25361937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 25452200 - 25452110
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgagaagtatcagtgcttc 132  Q
    |||||||| |||||||||| ||||||||||||||||  ||||||| | |||| |||||||  |||| |||||| |||| ||| || |||||||    
T  25452200 ctaataatttgagaaaatctcataattcagtgtaat--tatgtgtcggtgtcagacaccggaacacgcctaattcgagcagtgtccgtgcttc 25452110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 27471632 - 27471567
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtc 91  Q
    ||||||||| ||  |||||||| |||||||| |||||||||||||||||| | |||||||| ||||    
T  27471632 acacaccgataccgctaataatttgagaaaagcacataattcagtgtaattacatgtgttggtgtc 27471567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 34298429 - 34298478
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaat 75  Q
    ||||||||| ||  |||||||| |||||||||||||||||||||||||||    
T  34298429 acacaccgacaccactaataatttgagaaaatcacataattcagtgtaat 34298478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 36878468 - 36878525
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||||||||||||||||||||| ||| |||| | |||| |||||    
T  36878468 ctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtctgacac 36878525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 42325568 - 42325613
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttg 86  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||||    
T  42325568 taataatttgagaaaatgacataattcagtgtaacaatatgtgttg 42325613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 44482240 - 44482281
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgt 44482281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 10233260 - 10233304
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||    
T  10233260 ctaataaattgagaaaatcacataattcagtgtaattatatgtgt 10233304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 17831583 - 17831539
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||    
T  17831583 ctaataatttgagaaaatcacattattcagtgtaatcatatgtgt 17831539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 19324572 - 19324612
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaataatatgtg 83  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  19324572 ataatttgagaaaatcacataattcagtgtaattatatgtg 19324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 34371721 - 34371764
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  34371721 ctaataat-tgagaaaatcacataattcagtgtaattatatgtgt 34371764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 38076022 - 38075966
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggaca 96  Q
    |||||||| |||| ||||||||||| |||||||||| |||||||| | |||||||||    
T  38076022 ctaataatttgagtaaatcacataagtcagtgtaatcatatgtgtcggtgtcggaca 38075966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 40285706 - 40285654
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| |||||||||| |||||||||||||| | |||||||| |||||||    
T  40285706 ctaataatttgagaaaatcgcataattcagtgtagtcatatgtgtcgatgtcg 40285654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 31015050 - 31015085
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaat 75  Q
    |||||||| |||||||||||||||||||||||||||    
T  31015050 ctaataatttgagaaaatcacataattcagtgtaat 31015085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 19562687 - 19562629
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||| |||| ||| |||||||| |||||||||| |||| ||||||||||| ||||||||    
T  19562687 acacgccgacactgctaataatttgagaaaatctcatagttcagtgtaattatatgtgt 19562629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 35999374 - 35999320
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcgga 94  Q
    |||||||| | ||||||||| |||||| ||| |||| ||||||||||||||||||    
T  35999374 ctaataatttaagaaaatcatataatttagtataattatatgtgttgatgtcgga 35999320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 52903227 - 52903313
Alignment:
Q  11 cagagacggacagtaacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| ||||||| |||||| |||| ||   ||||||| | | ||||||| ||||||||||||||| |||||||| | ||||||||||    
T  52903227 cagacacggacactaacacgccgataccgttaataatttaataaaatcatataattcagtgtaattatatgtgtcggtgtcggacac 52903313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 2288218 - 2288129
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacacc-gagacactcctaatccgagaagtatcagtgcttc 132  Q
    ||||||| | |||||||||||||||||| ||||||  ||||||| | ||||||||||| ||| ||| ||||||||||| | | ||||||||||    
T  2288218 taataatttaagaaaatcacataattcaatgtaat--tatgtgtcggtgtcggacacctgag-cacgcctaatccgaggaatgtcagtgcttc 2288129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 2896173 - 2896140
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgta 73  Q
    |||||||| |||||||||||||||||||||||||    
T  2896173 ctaataatttgagaaaatcacataattcagtgta 2896140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 5898318 - 5898277
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatg 81  Q
    |||||||| ||| ||||||||||||||||||||||| |||||    
T  5898318 ctaataatctgaaaaaatcacataattcagtgtaattatatg 5898277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 39953198 - 39953141
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| | |||||||||||||||| ||||||||  ||||||| | ||||||||||    
T  39953198 ctaataattttagaaaatcacataatttagtgtaattgtatgtgtcggtgtcggacac 39953141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 398817 - 398773
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||||    
T  398817 ctaataatttgaaaaaatcacataattcagtgtaattataggtgt 398773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 1486761 - 1486717
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||||    
T  1486761 ctaataatttgaaaaaatcacataattcagtgtaattataagtgt 1486717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 9828051 - 9828095
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||| |||||||||||||||||||||||  |||||||    
T  9828051 ctaataatttgataaaatcacataattcagtgtaattttatgtgt 9828095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 10572641 - 10572597
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||||||||||| ||||||| | ||||||    
T  10572641 ctaataatttgagaaaatcacataattcggtgtaattaaatgtgt 10572597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 17705626 - 17705594
Alignment:
Q  52 gaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||||||||||||||||||| ||||||||    
T  17705626 gaaaatcacataattcagtgtaattatatgtgt 17705594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 26238164 - 26238128
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaata 76  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  26238164 ctaataatttgagaaaataacataattcagtgtaata 26238128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 28674808 - 28674864
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||||||||| |||||||||||| |||| |||| ||||| |||| |||||    
T  28674808 taataatttgagaaaattacataattcagtataattatatatgttggtgtcagacac 28674864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 34897092 - 34897149
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  34897092 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcggacac 34897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 13844662 - 13844591
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| |||| ||| |||||||| |||||||||||||||||| |||||||| |||||||| | ||||||||||    
T  13844662 acacgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 27213540 - 27213640
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgagaagtatca 125  Q
    |||| |||| ||| |||||||| | |||||||||||||||||| |||||| |||||      |||||||||||| |||||  |||||||||||||| ||     
T  27213540 acacgccgacactgctaataatttcagaaaatcacataattcactgtaattatatg------tgtcggacaccgggacacggctaatccgagaagtgtcc 27213633  T
Q  126 gtgcttc 132  Q
    |||||||    
T  27213634 gtgcttc 27213640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 31236643 - 31236572
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| |||| ||| |||||||| |||||||||||||||||||| |||||| |||||||| | || |||||||    
T  31236643 acacgccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgacggacac 31236572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 3025558 - 3025615
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||   ||||||||||    
T  3025558 ctaataatttgagaaaatcacataattcagtgtaattataggtgtcagtgtcggacac 3025615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 4786389 - 4786336
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcgga 94  Q
    ||||||| | ||||||||||||||||||||||||| |||||||| | |||||||    
T  4786389 taataatttaagaaaatcacataattcagtgtaattatatgtgtcggtgtcgga 4786336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 4948659 - 4948731
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatc 113  Q
    |||||||| ||| ||||||||||||||||||||||| | | |||| | ||||||||| |||||||| |||||||    
T  4948659 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggaca-cgagacacgcctaatc 4948731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 11803267 - 11803312
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttg 86  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||||    
T  11803267 taataatttaagaaaatcacataattcagtgtaattatatgtgttg 11803312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 12985400 - 12985456
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| |||||||||||||||||||| |||||| |||| ||| | ||||||||||    
T  12985400 taataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcggacac 12985456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 14134706 - 14134746
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatat 80  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  14134706 ctaataatttgagaaaatcacataattcagtgtaattatat 14134746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 14731719 - 14731763
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||    
T  14731719 ctaataatttgagaaaatcacataatttagtgtaattatatgtgt 14731763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 24362254 - 24362210
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||||    
T  24362254 ctaataatttgagagaatcacataattcagtgtaattatatgtgt 24362210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 4611528 - 4611583
Alignment:
Q  27 cacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgt 82  Q
    |||||||| ||  |||||||| ||||||||| ||||||||||||||||| ||||||    
T  4611528 cacaccgacaccgctaataatttgagaaaataacataattcagtgtaattatatgt 4611583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 11927137 - 11927094
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||||    
T  11927137 taataatttgataaaatcacataattcagtgtaattatatgtgt 11927094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 18646180 - 18646239
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccga 100  Q
    ||||||| ||| ||||| |||| |||||||||||| |||| ||||| |||||||||||||    
T  18646180 taataatttgaaaaaatgacatgattcagtgtaatcatatatgttggtgtcggacaccga 18646239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 37283862 - 37283827
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaat 75  Q
    |||||||| |||||||||||||||||||||||||||    
T  37283862 ctaataatctgagaaaatcacataattcagtgtaat 37283827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 39954331 - 39954288
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtg 83  Q
    |||||||| |||||||||||||||||| |||||||| |||||||    
T  39954331 ctaataatttgagaaaatcacataatttagtgtaattatatgtg 39954288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 31580178 - 31580124
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggac 95  Q
    ||||||| | |||||||||||||||| |||||||| ||| |||| ||||||||||    
T  31580178 taataatttaagaaaatcacataattgagtgtaattataggtgtcgatgtcggac 31580124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 38079017 - 38079063
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||||||| |||||||||||| ||||| || ||||||||||||    
T  38079017 agaaaatcacatgattcagtgtaattatatgcgtcgatgtcggacac 38079063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 12559171 - 12559107
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtc 91  Q
    ||||||||||| | |||||||| ||||||||| | ||||||||||||||| |||||| ||| ||||    
T  12559171 acacaccgaaa-tgctaataatttgagaaaatgatataattcagtgtaatcatatgtattggtgtc 12559107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 20679448 - 20679403
Alignment:
Q  39 cctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||||| ||||||||||||||| ||||||||||| ||| ||||    
T  20679448 cctaataatttgagaaaatcacatagttcagtgtaattataagtgt 20679403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 26902216 - 26902183
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||||||||||||||||||||| ||||||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgt 26902183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 40332200 - 40332233
Alignment:
Q  42 aataatgtgagaaaatcacataattcagtgtaat 75  Q
    |||||| |||||||||||||||||||||||||||    
T  40332200 aataatttgagaaaatcacataattcagtgtaat 40332233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 7658470 - 7658510
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatat 80  Q
    |||||||| ||||||||| ||||||||||||||||| ||||    
T  7658470 ctaataatttgagaaaattacataattcagtgtaattatat 7658510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 11944656 - 11944716
Alignment:
Q  24 taacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||| |||| |||  ||||||| ||| |||||||||||| |||||||||| ||||||||    
T  11944656 taacacgccgacactgttaataatttgataaaatcacataactcagtgtaattatatgtgt 11944716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 12606881 - 12606837
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||| |||||||| |||||| ||||||||    
T  12606881 ctaataatttgagaaaatcatataattcaatgtaattatatgtgt 12606837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 13203648 - 13203688
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatat 80  Q
    |||||||| ||||||||| ||||||||||||||||| ||||    
T  13203648 ctaataatttgagaaaattacataattcagtgtaattatat 13203688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 18067986 - 18067954
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgt 72  Q
    |||||||| ||||||||||||||||||||||||    
T  18067986 ctaataatttgagaaaatcacataattcagtgt 18067954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 34879357 - 34879414
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  34879357 ctaaaaatttgagaaaatcatataattcagtgtaataatatgtgtcgatgtcggacac 34879414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 30502440 - 30502383
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| |||||||||||| |||||||||||||| |||||||| | ||||||||||    
T  30502440 ctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacac 30502383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 30542783 - 30542726
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| |||||||||||| |||||||||||||| |||||||| | ||||||||||    
T  30542783 ctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacac 30542726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 6471941 - 6471897
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  6471941 ctaataatttgagaaaatcacataattcagtgtaattatatgtgt 6471897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 28588725 - 28588669
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||||||||||||||||||||||||||| ||| |||| | ||||||||||    
T  28588725 taataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacac 28588669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 41091309 - 41091257
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    ||||| || ||||||||||||||||||||||||||| |||||||| |||||||    
T  41091309 ctaatgatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcg 41091257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 6247629 - 6247725
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac----cgagacactcctaatccgagaagtatcagtgcttc 132  Q
    |||||||| ||| ||||||||||||||||||||||| | | |||| | ||||||||||    || ||||| ||||||||||||||| || |||||||    
T  6247629 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacggcacgggacacacctaatccgagaagtgtctgtgcttc 6247725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 17925223 - 17925166
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacacc 98  Q
    ||||||| | |||||||||||||||||| ||||||||||||||| | ||||| |||||    
T  17925223 taataatttaagaaaatcacataattcaatgtaataatatgtgtcggtgtcgaacacc 17925166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 21576797 - 21576740
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||||||||||||||||||| | | |||| ||||||||||||    
T  21576797 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcggacac 21576740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 3966510 - 3966554
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||    
T  3966510 ctaataatttgagaaaatcacacaattcagtgtaattatatgtgt 3966554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 24273078 - 24273039
Alignment:
Q  44 taatgtgagaaaatcacataattcagtgtaataatatgtg 83  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  24273078 taatttgagaaaatcacataattcagtgtaattatatgtg 24273039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 24389136 - 24389175
Alignment:
Q  44 taatgtgagaaaatcacataattcagtgtaataatatgtg 83  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  24389136 taatttgagaaaatcacataattcagtgtaattatatgtg 24389175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 35017030 - 35017085
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatg 81  Q
    |||| |||||||  |||||||| |||||||||||||||||| |||||||| |||||    
T  35017030 acacgccgaaaccactaataatttgagaaaatcacataatttagtgtaattatatg 35017085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 17593774 - 17593728
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttg 86  Q
    |||||||| |||||||||||| |||||||||||||| |||| |||||    
T  17593774 ctaataatttgagaaaatcacgtaattcagtgtaattatatatgttg 17593728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 18421890 - 18421836
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||| ||||||||||||||||| ||||||||| |||||||| |  |||||||||    
T  18421890 ataatttgagaaaatcacataatccagtgtaattatatgtgtcggcgtcggacac 18421836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 2548395 - 2548452
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacacc 98  Q
    |||||||  |||||||| ||||||||||||||||| ||| |||| | |||||||||||    
T  2548395 taataattagagaaaattacataattcagtgtaatcataagtgtcggtgtcggacacc 2548452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 21191108 - 21191051
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||||||||||||||||||| | | |||| | ||||||||||    
T  21191108 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 21191051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 21194253 - 21194200
Alignment:
Q  44 taatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| ||||||||||||||||||||||||||| ||  |||||  ||||||||||    
T  21194253 taatttgagaaaatcacataattcagtgtaatcattggtgttagtgtcggacac 21194200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 23016032 - 23015991
Alignment:
Q  49 tgagaaaatcacataattcagtgtaataatatgtgttgatgt 90  Q
    ||||||||||||||||||||||||||| ||| |||| |||||    
T  23016032 tgagaaaatcacataattcagtgtaattataggtgtcgatgt 23015991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 39758290 - 39758323
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||||||||||||||||||||| ||||||||    
T  39758290 agaaaatcacataattcagtgtaattatatgtgt 39758323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 6326345 - 6326257
Alignment:
Q  44 taatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgagaagtatcagtgcttc 132  Q
    |||| ||||||||| ||||||||||||||||| | | ||||    |||||||||||  |||| |||||| |||||||| || |||||||    
T  6326345 taatttgagaaaattacataattcagtgtaattacaagtgtcagcgtcggacaccggaacacgcctaattcgagaagtgtccgtgcttc 6326257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 14422922 - 14422966
Alignment:
Q  53 aaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||||||||||||||||||| ||| || | ||||||||||||    
T  14422922 aaaatcacataattcagtgtaattataagtttcgatgtcggacac 14422966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 19438353 - 19438385
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaat 75  Q
    ||||| |||||||||||||||||||||||||||    
T  19438353 ataatttgagaaaatcacataattcagtgtaat 19438385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 27144470 - 27144514
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||| ||||||||||||| |||||||| ||||||||    
T  27144470 ctaataatttgaggaaatcacataatttagtgtaattatatgtgt 27144514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 39205887 - 39205939
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| ||||||||||| ||||||  ||||||| |||||||||| |||||    
T  39205887 ctaataatttgagaaaatcatataattaggtgtaattatatgtgttggtgtcg 39205939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 1254245 - 1254301
Alignment:
Q  273 gtaccttgttaacagcagaacaaacaaatttgcaaccaagaacaatgttattaatga 329  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||    
T  1254245 gtaccttgttaacagaagaacaaacaaatttgcagccaagaacaatgtgattgatga 1254301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 5367199 - 5367256
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| |||| |||||||||||||||||||||| |||||||| | ||||||||||    
T  5367199 ctaataatttgaggaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 5367256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 37411296 - 37411239
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| |||||||||||||||||||||||| || |||||||| ||||||| ||||    
T  37411296 ctaataatttgagaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacac 37411239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 21616769 - 21616813
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  21616769 ctaataatttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 23718009 - 23718077
Alignment:
Q  16 acggacagtaacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||| | ||||||||| ||  |||||||| ||||||| ||||||||||||||||||| ||||||||    
T  23718009 acggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgt 23718077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 24105681 - 24105749
Alignment:
Q  16 acggacagtaacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||| | ||||||||| ||  |||||||| ||||||| ||||||||||||||||||| ||||||||    
T  24105681 acggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgt 24105749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 20242768 - 20242722
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||||||||||||||||||||| |||||||| | ||||||||||    
T  20242768 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 20242722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 21782884 - 21782835
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaat 75  Q
    |||| |||| ||| |||||||| |||||||||||||||||||||||||||    
T  21782884 acacgccgacactgctaataatttgagaaaatcacataattcagtgtaat 21782835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 34691857 - 34691800
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||| ||||||||||||||| |||||||| | ||||||||||    
T  34691857 ctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcggacac 34691800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 34714269 - 34714212
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||| ||||||||||||||| |||||||| | ||||||||||    
T  34714269 ctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcggacac 34714212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 5473336 - 5473392
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||| ||||||||||||||| |||||||| ||||||| | ||||||||||    
T  5473336 taataatttgaaaaaatcacataattcggtgtaatattatgtgtcggtgtcggacac 5473392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 18889643 - 18889599
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||    
T  18889643 ctaataaattgagaaaatcacataattcagtgtaatcatatgtgt 18889599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 29970601 - 29970549
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| |||||||||| |||| ||||||||||| |||||||| |||||||    
T  29970601 ctaataatttgagaaaatcgcatagttcagtgtaatcatatgtgtcgatgtcg 29970549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 42832342 - 42832254
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatcc 114  Q
    ||||||||| ||  |||||||| ||||||||| ||||| ||||||||||| ||| |||| | |||| ||| ||| ||||| ||||||||    
T  42832342 acacaccgacaccgctaataatttgagaaaattacatatttcagtgtaattataagtgtcggtgtccgactccgggacacgcctaatcc 42832254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 44860327 - 44860371
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||||| |||||||||||||||| ||||||||    
T  44860327 ctaataatttgagaaaatcgcataattcagtgtaattatatgtgt 44860371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 12748692 - 12748754
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagaca 104  Q
    ||||||| ||||||||| ||||| ||||||||||| ||| |||||| |||||||||||| ||||    
T  12748692 taataatttgagaaaatgacatagttcagtgtaatcataggtgttg-tgtcggacaccgggaca 12748754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 32749868 - 32749833
Alignment:
Q  49 tgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||||||||||||||||||||||||||| ||||    
T  32749868 tgagaaaatcacataattcagtgtaataataagtgt 32749833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 35449521 - 35449564
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||    
T  35449521 taataatttgagaaaatcacagaattcagtgtaattatatgtgt 35449564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 39279683 - 39279726
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||    
T  39279683 taataatatgagaaaatcaaataattcagtgtaattatatgtgt 39279726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 23921261 - 23921319
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccg 99  Q
    ||||||| ||||||||| ||||||||||||||||| |||  | ||| ||||||||||||    
T  23921261 taataatttgagaaaattacataattcagtgtaattataaatattggtgtcggacaccg 23921319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 28677916 - 28677958
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgt 82  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||    
T  28677916 ctaataatttgaaaaaatcacataattcagtgtaattatatgt 28677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 31808070 - 31808128
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||||| ||  |||||||| | | ||||||||||||||||||||||| ||||||||    
T  31808070 acacaccgacaccgctaataatttaacaaaatcacataattcagtgtaattatatgtgt 31808128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 36281693 - 36281734
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgt 82  Q
    ||||||| |||||||||||||||||| |||||||| ||||||    
T  36281693 taataatttgagaaaatcacataatttagtgtaatcatatgt 36281734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 896204 - 896276
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacacc 98  Q
    |||| |||| ||| |||||| | ||||||||||||||| |||| |||||| |||||||| |  ||||||||||    
T  896204 acacgccgacactgctaatagtttgagaaaatcacatatttcaatgtaatcatatgtgtcggcgtcggacacc 896276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 2331802 - 2331834
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgta 73  Q
    ||||||| |||||||||||||||||||||||||    
T  2331802 taataatttgagaaaatcacataattcagtgta 2331834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 18276528 - 18276572
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||||||| |||||||||||||| || |||||    
T  18276528 ctaataatttgagaaaatcacttaattcagtgtaattatgtgtgt 18276572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 18622613 - 18622665
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| | | ||||||||||||||||||||||| ||| |||||| |||||    
T  18622613 ctaataatttaataaaatcacataattcagtgtaattatacgtgttggtgtcg 18622665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 30471041 - 30471089
Alignment:
Q  36 actcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||||| | |||||||||||||||||||  |||||| ||||||||    
T  30471041 actcctaatattttgagaaaatcacataattcgatgtaattatatgtgt 30471089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 30717582 - 30717530
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| ||| ||||||||||||||||||||||| | | |||| |||||||    
T  30717582 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcg 30717530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 135379 - 135320
Alignment:
Q  25 aacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||||| ||| |||||||| ||||||||||||||||||| ||||||| ||||||||    
T  135379 aacacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgt 135320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 20549784 - 20549855
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||||| ||  |||||||| |||||||||||| |||||||||||||| |||||||| | ||||||||||    
T  20549784 acacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacac 20549855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 22868049 - 22868093
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  22868049 ctaataatatgagaaaatcacataattcagtgtaattatatgtgt 22868093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 29787445 - 29787386
Alignment:
Q  16 acggacagtaacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaat 75  Q
    ||||||| |||||| |||| ||  |||||||| |||||||||||||||||||||||||||    
T  29787445 acggacattaacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaat 29787386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 3721100 - 3721157
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| |||||||||||||||||| ||| |||| |||||||| | ||||||||||    
T  3721100 ctaataatttgagaaaatcacataatttagtataattatatgtgtcggtgtcggacac 3721157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 25481909 - 25481966
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||||||||||||||||||| | | |||||| ||||||||||    
T  25481909 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtcggacac 25481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 6630964 - 6630912
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| ||||||| |||| |||||||||||||| |||||||| |||||||    
T  6630964 ctaataatttgagaaagtcacttaattcagtgtaattatatgtgtcgatgtcg 6630912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 9482944 - 9482996
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggac 95  Q
    ||||| ||||||||||||| ||||||||||||| |||||||| | ||||||||    
T  9482944 ataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcggac 9482996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 17307904 - 17307952
Alignment:
Q  44 taatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||| ||||||||| ||||||||||||||||| |||||||||| |||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgttggtgtcg 17307952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 17851438 - 17851482
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| | ||||||||||||||||||||||||| ||||||||    
T  17851438 ctaataattttagaaaatcacataattcagtgtaattatatgtgt 17851482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 32287515 - 32287459
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggaca 96  Q
    |||||||| ||||||||||||||||||||||| ||  |||||||| | |||||||||    
T  32287515 ctaataatctgagaaaatcacataattcagtgcaagtatatgtgtcggtgtcggaca 32287459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 32308127 - 32308171
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||||||||||||||||||||||  |||||||    
T  32308127 ctaataatttgagaaaatcacataattcagtgtaattgtatgtgt 32308171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 2424621 - 2424656
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaat 75  Q
    |||||||| |||||||||||||||||||||||||||    
T  2424621 ctaataatttgagaaaatcacataattcagtgtaat 2424656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 22602753 - 22602718
Alignment:
Q  49 tgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||||||||||||||||||||||| ||||||||    
T  22602753 tgagaaaatcacataattcagtgtaattatatgtgt 22602718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 35297723 - 35297672
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    ||||||| |||||||||||||||||||| | |||| |||||||||| |||||    
T  35297723 taataatttgagaaaatcacataattcattataattatatgtgttggtgtcg 35297672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 16341504 - 16341546
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtg 83  Q
    ||||||| |||||||||||||||||| |||||||| |||||||    
T  16341504 taataatttgagaaaatcacataattaagtgtaattatatgtg 16341546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 18213074 - 18213028
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||||||||||| |||||||| |||||||| | ||||||||||    
T  18213074 agaaaatcacataatttagtgtaattatatgtgtcggtgtcggacac 18213028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 21826259 - 21826337
Alignment:
Q  19 gacagtaacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| |||||| |||| ||  |||||||| | | |||||||||||| ||||| ||||||||||||| | ||||||||||    
T  21826259 gacactaacacgccgacacgactaataatttaaaaaaatcacataactcagtctaataatatgtgtcggtgtcggacac 21826337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 28155577 - 28155651
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatcc 114  Q
    |||||||| ||||||||| ||||||||| ||||||| | | |||| | |||||||||||  ||||| ||||||||    
T  28155577 ctaataatttgagaaaattacataattcggtgtaattacaagtgtcggtgtcggacaccaggacacgcctaatcc 28155651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 39138462 - 39138508
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||||||||||||||||||||| |||| ||| | ||||||||||    
T  39138462 agaaaatcacataattcagtgtaattatatatgtcggtgtcggacac 39138508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 5233637 - 5233682
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttg 86  Q
    ||||||| |||||||||||||||||  |||||||| ||||||||||    
T  5233637 taataatttgagaaaatcacataatctagtgtaattatatgtgttg 5233682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 5548686 - 5548727
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||    
T  5548686 ataatttgagaaaatcaaataattcagtgtaattatatgtgt 5548727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 12278843 - 12278899
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacacc 98  Q
    ||||||| | ||||||| ||||||||||||||||| |||||||| | |||||||||||    
T  12278843 taataatttaagaaaatgacataattcagtgtaattatatgtgtcg-tgtcggacacc 12278899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 21880159 - 21880216
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||| ||||||||||||||||| | | |||| | ||||||||||    
T  21880159 ctaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacac 21880216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 26733311 - 26733368
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| |||||||||||||||||| |||| | |||||| | ||||||||||    
T  26733311 ctaataatttgacaaaatcacataattcagtctaattaaatgtgtcggtgtcggacac 26733368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 30731046 - 30731079
Alignment:
Q  42 aataatgtgagaaaatcacataattcagtgtaat 75  Q
    |||||| |||||||||||||||||||||||||||    
T  30731046 aataatttgagaaaatcacataattcagtgtaat 30731079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 5835254 - 5835298
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||| | ||||||||| ||||||||||||||||| ||||||||    
T  5835254 ctaatagtttgagaaaataacataattcagtgtaattatatgtgt 5835298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 19206057 - 19206101
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||||||||||||||| | |||| ||||||||    
T  19206057 ctaataatttgagaaaatcacataattcattataattatatgtgt 19206101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 19992008 - 19992052
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||||||| ||||||||||| ||| ||||    
T  19992008 ctaataatttgagaaaatcacatatttcagtgtaattataagtgt 19992052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 23746967 - 23747007
Alignment:
Q  81 gtgttgatgtcggacaccgagacactcctaatccgagaagt 121  Q
    |||||| ||||||||| |||||||| |||||||||||||||    
T  23746967 gtgttggtgtcggacatcgagacacgcctaatccgagaagt 23747007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 38143231 - 38143287
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||| |||||||||||||| | |||||| |||||||||| |||| |||||    
T  38143231 taataatttgaaaaaatcacataatttaatgtaattatatgtgttggtgtcagacac 38143287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 16192801 - 16192750
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||    
T  16192801 taataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcg 16192750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 7928457 - 7928514
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||| | ||||||||||    
T  7928457 ctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7928514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 11313864 - 11313807
Alignment:
Q  28 acaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgtt 85  Q
    ||||||| ||| |||||||| |||||||||||||||||| |||||||| |||||||||    
T  11313864 acaccgacactgctaataatttgagaaaatcacataatttagtgtaattatatgtgtt 11313807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 11493413 - 11493372
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatg 81  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  11493413 ctaataatgtgagaaaatcacataattcagtgtaattatatg 11493372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 45451560 - 45451617
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||| | ||||||||||    
T  45451560 ctaataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacac 45451617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 8789616 - 8789545
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||||| ||  || ||||| ||||||||||||||||||| ||||||| |||||||| | ||||||||||    
T  8789616 acacaccgacacggcttataatttgagaaaatcacataattccgtgtaattatatgtgtcggtgtcggacac 8789545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 13414487 - 13414557
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgagaagt 121  Q
    ||||||||| |||||||| |||||| |||||||| | |||||||||| | ||||| ||| |||||||||||    
T  13414487 agaaaatcaaataattcaatgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagt 13414557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 25093488 - 25093566
Alignment:
Q  19 gacagtaacacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| |||||| |||| |||  |||| || ||||||||||||| ||||||||||||| |||||||| | ||||||||||    
T  25093488 gacactaacacgccgacactgttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacac 25093566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 8383264 - 8383321
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||||| ||||||||||||||| ||| |||| | ||||||||||    
T  8383264 ctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcggacac 8383321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 49505206 - 49505149
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||   ||||||||||    
T  49505206 ctaataatttgagaaaatcacataatttagtgtaattatatgtgtcagtgtcggacac 49505149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 3164077 - 3164025
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| ||| |||||||||||||||||||||| || | ||||||||||||    
T  3164077 ctaataatttgaaaaaatcacataattcagtgtaagaacaagtgttgatgtcg 3164025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 6780462 - 6780414
Alignment:
Q  49 tgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||||||| || ||||||||||| |||||||||| ||||||||||    
T  6780462 tgagaaaatcacgtagttcagtgtaattatatgtgttggtgtcggacac 6780414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 10690314 - 10690274
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatat 80  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  10690314 ctaataatctgagaaaatcacataattcagtgtaattatat 10690274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 14618787 - 14618831
Alignment:
Q  39 cctaataatgtgagaaaatcacataattcagtgtaataatatgtg 83  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||    
T  14618787 cctaataatttaagaaaaccacataattcagtgtaataatatgtg 14618831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 20691327 - 20691383
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||| | |||| |||||    
T  20691327 taataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacac 20691383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 25948939 - 25948887
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| ||| ||||||||||||||||||||||| ||| |||||| |||||    
T  25948939 ctaataatttgaaaaaatcacataattcagtgtaattataagtgttggtgtcg 25948887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 29508437 - 29508501
Alignment:
Q  26 acacaccgaaactcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgt 90  Q
    ||||||||| ||  |||||||| ||| ||||||| ||||||||||||||| |||||||| |||||    
T  29508437 acacaccgataccactaataatttgaaaaaatcatataattcagtgtaattatatgtgtcgatgt 29508501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 40993374 - 40993330
Alignment:
Q  53 aaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||    
T  40993374 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 40993330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 11251985 - 11252020
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaat 75  Q
    |||||||| |||||||||||||||||||||||||||    
T  11251985 ctaataatttgagaaaatcacataattcagtgtaat 11252020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 32804591 - 32804548
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||    
T  32804591 taataatttgagaaaatcacataatttagtgtaattatatgtgt 32804548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 1438811 - 1438861
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgt 90  Q
    |||| ||| |||||||||||||||||||||| |||| |||||| |||||||    
T  1438811 ctaacaatttgagaaaatcacataattcagtataattatatgtattgatgt 1438861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 4704339 - 4704301
Alignment:
Q  45 aatgtgagaaaatcacataattcagtgtaataatatgtg 83  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  4704339 aatgtgagaaaatgacataattcagtgtaatcatatgtg 4704301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 12704014 - 12704056
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgt 82  Q
    |||||||| |||||||| |||||||||||||||||| ||||||    
T  12704014 ctaataatttgagaaaagcacataattcagtgtaattatatgt 12704056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 8789537 - 8789492
Alignment:
Q  87 atgtcggacaccgagacactcctaatccgagaagtatcagtgcttc 132  Q
    ||||||||||||||||||| ||||||||||| ||| || |||||||    
T  8789537 atgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttc 8789492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 9624648 - 9624689
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatg 81  Q
    |||||||| |||||||||||||||||||| |||||| |||||    
T  9624648 ctaataatttgagaaaatcacataattcaatgtaattatatg 9624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 10954959 - 10955016
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||||||||||||||||||| | | |||| | ||||||||||    
T  10954959 ctaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacac 10955016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 35222956 - 35223001
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgttgatgtcggaca 96  Q
    |||||||||||||||||| |||||| |||||||| | |||||||||    
T  35222956 agaaaatcacataattcaatgtaattatatgtgtcggtgtcggaca 35223001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 8039887 - 8039843
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||| | ||||||||||||||| ||||||||    
T  8039887 ctaataatttgagaaaattatataattcagtgtaattatatgtgt 8039843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 10455797 - 10455849
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||| ||||||||||| |||| | |||||||| |||||||||| |||||    
T  10455797 ctaataatatgagaaaatcatataactaagtgtaattatatgtgttggtgtcg 10455849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 15314924 - 15314876
Alignment:
Q  44 taatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||| ||| |||||||||||||| |||||||| |||||||||| |||||    
T  15314924 taatttgaaaaaatcacataatttagtgtaattatatgtgttggtgtcg 15314876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 34307832 - 34307788
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| ||||||||||||||| ||||||||||| ||| ||||    
T  34307832 ctaataatttgagaaaatcacatatttcagtgtaattataagtgt 34307788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 36635331 - 36635376
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgtt 85  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||    
T  36635331 ctaataatttgagaaaatcacataattcagtgtaattatatgtgtt 36635376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 17425445 - 17425345
Alignment:
Q  36 actcctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgagaagtatcagtgcttcgta 135  Q
    |||||||||||| |||||||||| ||||||||||||||||  |||||||   |||| |||||   ||||| ||||||||||| ||| || ||||||| ||    
T  17425445 actcctaataatttgagaaaatcgcataattcagtgtaat--tatgtgtctgtgtcagacacaaggacacgcctaatccgaggagtgtctgtgcttcata 17425348  T
Q  136 tta 138  Q
    |||    
T  17425347 tta 17425345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 22440651 - 22440561
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgagaagtatcagtgcttc 132  Q
    ||||||| ||||||||||||||||||||||||||| |||||||  | |||| |||||   ||||| ||||||||||| ||| || |||||||    
T  22440651 taataatttgagaaaatcacataattcagtgtaattatatgtgacg-tgtccgacactaggacacgcctaatccgaggagtgtccgtgcttc 22440561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 903930 - 903971
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgt 82  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  903930 taataatttgagaaaatcacataattcagtgtaattatatgt 903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 8423770 - 8423713
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||||||||||||||||||||||||||| |||  ||| | ||||||||||    
T  8423770 ctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcggacac 8423713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 15029772 - 15029825
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcgg 93  Q
    |||||||| ||| || |||||||||||||||||||| |||||||||| ||||||    
T  15029772 ctaataatttgaaaatatcacataattcagtgtaattatatgtgttggtgtcgg 15029825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 54580075 - 54580018
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||||||| ||| ||||||||||||||||||||||| ||| |||| | ||||||||||    
T  54580075 ctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcggacac 54580018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 10499313 - 10499246
Alignment:
Q  49 tgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacaccgagacactcctaatccgag 117  Q
    |||||||||||||||||| |||||||| ||||||||   |||||||| |||| |||| |||||||||||    
T  10499313 tgagaaaatcacataatttagtgtaattatatgtgtcagtgtcggac-ccgacacacgcctaatccgag 10499246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 18576086 - 18576038
Alignment:
Q  43 ataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtc 91  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||| ||||    
T  18576086 ataatttgagaaaatcacataattcggtgtaattatatgtgttggtgtc 18576038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 40613457 - 40613501
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||| | ||||||||||||||||||||||||||| ||||||||    
T  40613457 ctaatattttgagaaaatcacataattcagtgtaattatatgtgt 40613501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 46180986 - 46180942
Alignment:
Q  42 aataatgtgagaaaatcacataattcagtgtaataatatgtgttg 86  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||    
T  46180986 aataatttgagaaaataacataattcagtgtaatcatatgtgttg 46180942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 5775409 - 5775366
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||    
T  5775409 taataatttgagaaaatcacataattaagtgtaattatatgtgt 5775366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 33950143 - 33950201
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacacc 98  Q
    |||||||| |||||||||||||||||| | |||||| |||||||| | |||| ||||||    
T  33950143 ctaataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacacc 33950201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 13134468 - 13134509
Alignment:
Q  51 agaaaatcacataattcagtgtaataatatgtgttgatgtcg 92  Q
    |||||||||||||||| |||||||| |||||||| |||||||    
T  13134468 agaaaatcacataatttagtgtaattatatgtgtcgatgtcg 13134509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 16189716 - 16189773
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    |||| ||| ||||||||||||||||||||||||||| || ||||| | || |||||||    
T  16189716 ctaaaaatttgagaaaatcacataattcagtgtaattatgtgtgtcggtgacggacac 16189773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 20743329 - 20743284
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttg 86  Q
    ||||||| ||||||||| ||||||||||||||||| ||| ||||||    
T  20743329 taataatttgagaaaatgacataattcagtgtaatcataggtgttg 20743284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 6933282 - 6933326
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||||| |||||||| ||||||||||| |||| ||||||||    
T  6933282 ctaataatgtaagaaaatctcataattcagtttaatcatatgtgt 6933326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 9996849 - 9996889
Alignment:
Q  42 aataatgtgagaaaatcacataattcagtgtaataatatgt 82  Q
    |||||| |||||||||||||||||||||| |||| ||||||    
T  9996849 aataatttgagaaaatcacataattcagtataattatatgt 9996889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 30103412 - 30103365
Alignment:
Q  36 actcctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    ||||| |||||| |||||||||||||||||| |||||||| ||||||||    
T  30103412 actccaaataatttgagaaaatcacataatt-agtgtaatcatatgtgt 30103365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 40179675 - 40179631
Alignment:
Q  53 aaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||||||||||||||||||| ||||| || | ||||||||||    
T  40179675 aaaatcacataattcagtgtaattatatgcgtcggtgtcggacac 40179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 42014974 - 42015022
Alignment:
Q  49 tgagaaaatcacataa-ttcagtgtaataatatgtgttgatgtcggaca 96  Q
    ||||| |||||||||| ||||||||||| |||||||||| |||||||||    
T  42014974 tgagataatcacataaattcagtgtaattatatgtgttggtgtcggaca 42015022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 48139272 - 48139328
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||||| |||| ||||||| | |||||| ||||||||||||||| |||||    
T  48139272 taataatttgagataatctcataatttaatgtaattatatgtgttgatgtcagacac 48139328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 44577 - 44533
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||    
T  44577 ctaaaaatttgagaaaatcacataattcagtgtaattatatgtgt 44533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 9799 - 9755
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||    
T  9799 ctaataatttgagaaaatcacttaattcagtgtaattatatgtgt 9755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 90851 - 90907
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||||||||||| ||||||||||||||| |||| ||| |||||| |||||    
T  90851 taataatttgagaaaatcatataattcagtgtaattatatatgtcgatgtcagacac 90907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 53189 - 53231
Alignment:
Q  42 aataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||    
T  53189 aataatttgagaaaatcacataattcagtgtaattataagtgt 53231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 70286 - 70342
Alignment:
Q  41 taataatgtgagaaaatcacataattcagtgtaataatatgtgttgatgtcggacac 97  Q
    ||||||| ||| ||||| ||||||||||||||||| ||| |||| | ||||||||||    
T  70286 taataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacac 70342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 263424 - 263380
Alignment:
Q  40 ctaataatgtgagaaaatcacataattcagtgtaataatatgtgt 84  Q
    |||||||| |||||||| |||||||||||||||||| ||| ||||    
T  263424 ctaataatttgagaaaaccacataattcagtgtaattataagtgt 263380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University