View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_14 (Length: 341)
Name: NF2253_low_14
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 92 - 267
Target Start/End: Complemental strand, 5623527 - 5623352
Alignment:
| Q |
92 |
ttactcttttcttactcatcatacaaatgttatttgtagtaataattaccttagcaacaatgttgttttgttttcacaacaaccaaattgttatgttccc |
191 |
Q |
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| T |
5623527 |
ttactcttttcttactcatcatacaaatgttatttgtagtaataatcaccttagcaacaatgttgttttgttttcacaacaaccaaattgttatgttccc |
5623428 |
T |
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| Q |
192 |
tcaattgggtcattagggtttcatcattccaccacaccactcctgtctaaggacaataagattgttcctcaacaaa |
267 |
Q |
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| T |
5623427 |
tcaattgggtcattagggtttcatcattccaccacaccactcctgtctaagaacaataagattgttcctcaacaaa |
5623352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 5623627 - 5623552
Alignment:
| Q |
16 |
ataatttcataacaaaccatcaaaaacaacaacccattatgttgaatttctcttttcagtttcacaattctgttcc |
91 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5623627 |
ataatttcataaccaaccatcaaaaacaacaacccattatgttgaatttctcttttcagtttcacaattctgttcc |
5623552 |
T |
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