View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_15 (Length: 323)
Name: NF2253_low_15
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 153561 - 153265
Alignment:
| Q |
17 |
catcaatgccgttgaggtatgccttcacctctggtatgccagagccagcagctgcaggagcaatgtaagcacacagggctgcagcaccaacccctaaaat |
116 |
Q |
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| T |
153561 |
catcaatgccgttgaggtatgccttcacctctggtatgccagagccagcagctgcaggagcaatgtaagcacacagggctgccgcaccaacccctaaaat |
153462 |
T |
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| Q |
117 |
catgttacaaccaacgtacactgcaaatgcctcatggtacttttgcttgagcatgagattgttggtgagtagaagtttgaaaccagcaatattctcaact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153461 |
catgttacaaccaacgtacactgcaaatgcctcatggtacttttgcttgagcatgagattgttggtgagtagaagtttgaaaccagcaatattctcaact |
153362 |
T |
|
| Q |
217 |
ccaaggttattaaagaacccaacaagtcctgtaattaaaccaataagaagtgcaagggtccacttcagaacaacatattggtatatctcaacctttg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153361 |
ccaaggttattaaagaacccaacaagtcctgtaattaaaccaataagaagtgcaagggtccacttcagaacaacatattggtatatctcaacctttg |
153265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 56471562 - 56471667
Alignment:
| Q |
166 |
agcatgagattgttggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacccaacaagtcctgtaattaaaccaataagaa |
265 |
Q |
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|||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||| |||||| ||||| | ||||| ||||| |||||||||||||| |
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| T |
56471562 |
agcatgagatggttggtgaggagaagcttgaaaccagcaatattctcaacaccaatgttattgaagaaggcgacaagacctgtgcctaaaccaataagaa |
56471661 |
T |
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| Q |
266 |
gtgcaa |
271 |
Q |
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|||||| |
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| T |
56471662 |
gtgcaa |
56471667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 24332152 - 24332236
Alignment:
| Q |
17 |
catcaatgccgttgaggtatgccttcacctctggtatgccagagccagcagctgcaggagcaatgtaagcacacagggctgcagc |
101 |
Q |
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|||| ||||||||||| ||||| || ||||| |||||||||||||| || |||| |||||||||| ||||||| || |||||||| |
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| T |
24332152 |
catcgatgccgttgagatatgctttaacctccggtatgccagagcctgctgctgaaggagcaatgaaagcacagagtgctgcagc |
24332236 |
T |
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