View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2253_low_18 (Length: 302)
Name: NF2253_low_18
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 42221370 - 42221192
Alignment:
| Q |
10 |
aagaaaatacaaacaatttctcatatcaatgataatccatttcagactttgcaattagatgaatagatgataattgagaaagattaggggggatctctga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
42221370 |
aagaaaatacaaacaatttctcatatcaatgataatccatttctgactttgcaattagatgaataaataataaatgagaaagattaggggggatctctga |
42221271 |
T |
|
| Q |
110 |
cagaattcttagccacttaaaaattgaataatgttgagtgggacccattattcaagtagaaaaagaagaaaaaaggaat |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42221270 |
cagaattcttagccacttaaaaattgaataatgttgagtgggacccattattcaagtagaaaaagaagaaaaaaggaat |
42221192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 42220919 - 42220886
Alignment:
| Q |
260 |
attgcacatgtatgagaaaaatatcccgcagtat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
42220919 |
attgcacatgtatgagaaaaatatcccgctgtat |
42220886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University