View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2253_low_19 (Length: 298)

Name: NF2253_low_19
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2253_low_19
NF2253_low_19
[»] chr5 (4 HSPs)
chr5 (19-193)||(13869358-13869529)
chr5 (56-193)||(27640992-27641129)
chr5 (243-282)||(13869251-13869290)
chr5 (243-282)||(27640886-27640925)
[»] scaffold0386 (2 HSPs)
scaffold0386 (33-193)||(1055-1215)
scaffold0386 (248-282)||(707-741)
[»] chr4 (4 HSPs)
chr4 (19-193)||(33878738-33878909)
chr4 (243-282)||(33878635-33878674)
chr4 (248-282)||(33879203-33879237)
chr4 (102-139)||(46673679-46673716)
[»] chr3 (2 HSPs)
chr3 (20-193)||(49851191-49851350)
chr3 (243-282)||(49851417-49851456)
[»] chr8 (3 HSPs)
chr8 (36-193)||(38460545-38460702)
chr8 (102-139)||(44428121-44428158)
chr8 (248-282)||(38460880-38460914)
[»] chr7 (2 HSPs)
chr7 (33-193)||(29735488-29735642)
chr7 (102-139)||(8720808-8720845)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 13869529 - 13869358
Alignment:
Q  19 gattggattgcaataataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatga 118  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13869529 gattggattgca---ataacacccaatacagcatgatttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatga 13869433  T
Q  119 gacataaccatcttcacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 193  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13869432 gacataaccatcttcataatttaaacaacaagagaagtttggcgtttctagaattattccaccggtttaagcaaa 13869358  T

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Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 27641129 - 27640992
Alignment:
Q  56 ttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcacaatttaaacaacaagagaag 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27641129 ttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaag 27641030  T
Q  156 tttggcgtttctagaattattccacccgtttaagcaaa 193  Q
    |||||||||||||||||||||||||| |||||||||||    
T  27641029 tttggcgtttctagaattattccaccagtttaagcaaa 27640992  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 13869290 - 13869251
Alignment:
Q  243 tgacctgtcaagatttcattggatgtttgtaagtgccaca 282  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  13869290 tgacctgtcatgatttcattggatgtttgtaagtgccaca 13869251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 27640925 - 27640886
Alignment:
Q  243 tgacctgtcaagatttcattggatgtttgtaagtgccaca 282  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  27640925 tgacctgtcatgatttcattggatgtttgtaagtgccaca 27640886  T

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Target: scaffold0386 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 1055 - 1215
Alignment:
Q  33 aataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatctt 132  Q
    ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  1055 aataacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatctt 1154  T
Q  133 cacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 193  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  1155 cacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaa 1215  T

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Target: scaffold0386; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 741 - 707
Alignment:
Q  248 tgtcaagatttcattggatgtttgtaagtgccaca 282  Q
    ||||| |||||||||||||||||||||||||||||    
T  741 tgtcatgatttcattggatgtttgtaagtgccaca 707  T

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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 33878909 - 33878738
Alignment:
Q  19 gattggattgcaataataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatga 118  Q
    ||||||||||||   |||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||||||| ||||||| ||| |||||    
T  33878909 gattggattgca---ataacacccaatacagcatggtttagaaacaatctccgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatga 33878813  T
Q  119 gacataaccatcttcacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 193  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  33878812 gccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaa 33878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 33878674 - 33878635
Alignment:
Q  243 tgacctgtcaagatttcattggatgtttgtaagtgccaca 282  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  33878674 tgacctgtcatgatttcattggatgtttgtaagtgccaca 33878635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 33879203 - 33879237
Alignment:
Q  248 tgtcaagatttcattggatgtttgtaagtgccaca 282  Q
    ||||| |||||||||||||||||||||||||||||    
T  33879203 tgtcacgatttcattggatgtttgtaagtgccaca 33879237  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 46673716 - 46673679
Alignment:
Q  102 caatgagcagtggatgagacataaccatcttcacaatt 139  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  46673716 caatgagtagtggatgagtcataaccatcttcacaatt 46673679  T

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Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 49851191 - 49851350
Alignment:
Q  20 attggattgcaataataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||| |||||||||||||    
T  49851191 attggattgcaataataacacccaatacagcatgatttagaaacaatctctacataat--------------tatggtgttacaataagcagtggatgag 49851276  T
Q  120 acataaccatcttcacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 193  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  49851277 acataaccatcttcacaatttaaacaacaagggaagtttggcgtttctagaattattccaccagtttaagcaaa 49851350  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 49851417 - 49851456
Alignment:
Q  243 tgacctgtcaagatttcattggatgtttgtaagtgccaca 282  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  49851417 tgacctgttatgatttcattggatgtttgtaagtgccaca 49851456  T

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Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 38460702 - 38460545
Alignment:
Q  36 aacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcac 135  Q
    ||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38460702 aacacccaatacaacatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagcagtggatgagacataaccatcttcac 38460603  T
Q  136 aatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 193  Q
    ||||||||||||||||||  ||||| ||||||||| |||||||||  |||||||||||    
T  38460602 aatttaaacaacaagagatatttggagtttctagacttattccacaggtttaagcaaa 38460545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 44428121 - 44428158
Alignment:
Q  102 caatgagcagtggatgagacataaccatcttcacaatt 139  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  44428121 caatgagtagtggatgagacataaccatcttcacaatt 44428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 38460880 - 38460914
Alignment:
Q  248 tgtcaagatttcattggatgtttgtaagtgccaca 282  Q
    ||||| |||||||||||||||||||||||||||||    
T  38460880 tgtcatgatttcattggatgtttgtaagtgccaca 38460914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 29735488 - 29735642
Alignment:
Q  33 aataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatctt 132  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||      |||||||||||||||||||    
T  29735488 aataacacccaatacagtatggtttagaaacaatctctacatgatttggatccgttaattatggtgttgcaatga------gatgagacataaccatctt 29735581  T
Q  133 cacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 193  Q
    |||||||||||||||||||| | |||||| ||| ||||||||||||||| |||||||||||    
T  29735582 cacaatttaaacaacaagaggaatttggcatttttagaattattccaccggtttaagcaaa 29735642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 8720845 - 8720808
Alignment:
Q  102 caatgagcagtggatgagacataaccatcttcacaatt 139  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8720845 caatgagtagtggatgagacataaccatcttcacaatt 8720808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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