View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2253_low_2 (Length: 587)

Name: NF2253_low_2
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2253_low_2
NF2253_low_2
[»] chr3 (2 HSPs)
chr3 (17-572)||(16456140-16456695)
chr3 (527-579)||(7404058-7404110)
[»] chr1 (5 HSPs)
chr1 (17-411)||(44135212-44135602)
chr1 (289-410)||(44126675-44126799)
chr1 (407-481)||(44135088-44135155)
chr1 (527-577)||(47694242-47694292)
chr1 (407-452)||(44126547-44126588)
[»] chr8 (3 HSPs)
chr8 (527-579)||(25641050-25641102)
chr8 (527-579)||(27813899-27813951)
chr8 (533-577)||(4743891-4743935)
[»] chr7 (1 HSPs)
chr7 (527-579)||(4683056-4683108)
[»] chr4 (1 HSPs)
chr4 (527-579)||(53302423-53302475)
[»] chr2 (4 HSPs)
chr2 (527-579)||(30269097-30269149)
chr2 (527-579)||(31332079-31332131)
chr2 (527-579)||(31338809-31338861)
chr2 (527-579)||(31481970-31482020)
[»] chr5 (2 HSPs)
chr5 (526-579)||(37190451-37190504)
chr5 (527-579)||(7413064-7413116)
[»] chr6 (1 HSPs)
chr6 (527-579)||(30824996-30825048)


Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 17 - 572
Target Start/End: Original strand, 16456140 - 16456695
Alignment:
Q  17 tatatattgtttgaacattaaagaagaaaaggacataagtgatttactgaaaaataaactatttagggtcattttcttttgtacgactaaattatctctt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456140 tatatattgtttgaacattaaagaagaaaaggacataagtgatttattgaaaaataaactatttagggtcattttcttttgtacgactaaattatctctt 16456239  T
Q  117 ttccaattattgtcttggaccaaatcacccctttttaattattgttaggcacctaattgtccctttattgacgatggtttaggcatctaattttatagtt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456240 ttccaattattgtcttggaccaaatcacccctttttaattattgttaggcacctaattgtccctttattgacgatggtttaggcatctaattttatagtt 16456339  T
Q  217 catagttttttcttaggaactcaaatttgtgtttatttttctagagcaaattgagtcacacggttttgttagagactaaaattagtctttcctctttatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456340 catagttttttcttaggaactcaaatttgtgtttatttttctagagcaaattgagtcacacggttttgttagagactaaaattagtctttcctctttatt 16456439  T
Q  317 ttatttacttaccctgagaaaactcaatttcaagttatagacgaaaaatgaagtgagaaaatttcaacatcttaatattacttcaaatgcattaaggttt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456440 ttatttacttaccctgagaaaactcaatttcaagttatagacgaaaaatgaagtgagaaaatttcaacatcttaatattacttcaaatgcattaaggttt 16456539  T
Q  417 catgggtaaaatatatataaaagaaaataagagaaccatatactactacagggaagagttgaacatttagaatatagatagatactactacatacatatg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456540 catgggtaaaatatatataaaagaaaataagagaaccatatactactacagggaagagttgaacatttagaatatagatagatactactacatacatatg 16456639  T
Q  517 accattagttaaattttatttacttctctaatcttagtaatgtgattctcctgcac 572  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456640 acctttagttaaattttatttacttctctaatcttagtaatgtgattctcctgcac 16456695  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 527 - 579
Target Start/End: Original strand, 7404058 - 7404110
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    |||| ||||||||| ||||||||| || ||||||||||||||||| |||||||    
T  7404058 aaatattatttactcctctaatctcagaaatgtgattctcctgcatctatgct 7404110  T

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Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 44135602 - 44135212
Alignment:
Q  17 tatatattgtttgaacattaaagaagaaaa-ggacataagtgatttactgaaaaataaactatttagggtcattttcttttgtacgactaaattatctct 115  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  44135602 tatatattgcttgaacattaaagaaaaaaaaggacataagtgatttactgaaaaataaactatttagggacattttcttttgtaggactaaattatctct 44135503  T
Q  116 tttccaattattgtcttggaccaaatcacccctttttaattattgttaggcacctaattgtccctttattgacgatggtttaggcatctaattttatagt 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||    
T  44135502 tttccaattattgtcttggaccaagtcacccctttttaattattgttaggcacctaattgtctctttattgacgatggtttaggcacctagttttgtagt 44135403  T
Q  216 tcatagttttttcttaggaactcaaatttgtgtttattttt-ctagagcaaattgagtcacacggttttgttagagactaaaattagtctttcctcttta 314  Q
    |||| ||      |||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||  ||    
T  44135402 tcattgt------ttaggaactcaaatttgtatttatttttcctagagcaaattgggtcacacagttttgttagagactaaaactagtctttcctc--ta 44135311  T
Q  315 ttttatttacttaccctgagaaaactcaatttcaagttatagacgaaaaatgaagtgagaaaatttca--acatcttaatattacttcaaatgcattaa 411  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||    
T  44135310 ttttattcacttaccctgagaaatctcaatttcaagttatagacgaaaaatgaagagagaatatttcaacacatcttaatattacttcaaatgcattaa 44135212  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 289 - 410
Target Start/End: Complemental strand, 44126799 - 44126675
Alignment:
Q  289 agactaaaattagtcttt-cctctttattttatttacttaccctgagaaaactcaatttcaagttatagacgaaaaatgaagtgagaaaatttcaaca-- 385  Q
    |||||||||||||||||| |||||||| | |||  |||||| |||||||| ||||||||||||| ||||||||||||| ||| || || |||||||||      
T  44126799 agactaaaattagtcttttcctctttagtatatgcacttactctgagaaatctcaatttcaagtgatagacgaaaaattaagagaaaatatttcaacacc 44126700  T
Q  386 tcttaatattacttcaaatgcatta 410  Q
    |||||||||||||||||||||||||    
T  44126699 tcttaatattacttcaaatgcatta 44126675  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 481
Target Start/End: Complemental strand, 44135155 - 44135088
Alignment:
Q  407 attaaggtttcatgggtaaaatatatataaaagaaaataagagaaccatatactactacagggaagagttgaaca 481  Q
    |||||||||||||||||||| ||||    |||||||||||||||||||||||   ||||||||||||||||||||    
T  44135155 attaaggtttcatgggtaaattata----aaagaaaataagagaaccatata---ctacagggaagagttgaaca 44135088  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 577
Target Start/End: Original strand, 47694242 - 47694292
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatg 577  Q
    ||||||||||||||||||||||||  ||||||||||| | || ||||||||    
T  47694242 aaattttatttacttctctaatctccgtaatgtgattattctacacctatg 47694292  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 44126588 - 44126547
Alignment:
Q  407 attaaggtttcatgggtaaaatatatataaaagaaaataagagaac 452  Q
    |||||||||||||||||||||    |||||||||||||||||||||    
T  44126588 attaaggtttcatgggtaaaa----tataaaagaaaataagagaac 44126547  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 25641102 - 25641050
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  25641102 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 25641050  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 27813951 - 27813899
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  27813951 aaattttatttacttctctaatctcagcaatgtgattctcctgcatctatgct 27813899  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 577
Target Start/End: Complemental strand, 4743935 - 4743891
Alignment:
Q  533 tatttacttctctaatcttagtaatgtgattctcctgcacctatg 577  Q
    |||||||||||||||||| ||||||||||||  | ||||||||||    
T  4743935 tatttacttctctaatctcagtaatgtgattgccgtgcacctatg 4743891  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 579
Target Start/End: Original strand, 4683056 - 4683108
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  4683056 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 4683108  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 53302475 - 53302423
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  53302475 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 53302423  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 30269149 - 30269097
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  30269149 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 30269097  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 579
Target Start/End: Original strand, 31332079 - 31332131
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  31332079 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 31332131  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 579
Target Start/End: Original strand, 31338809 - 31338861
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  31338809 aaattttatttacttctctaatctcagaaatgtgattctcctgcatctatgct 31338861  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 31482020 - 31481970
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    |||||||||||||||||||||||  |||||||||||||| |||| ||||||||    
T  31482020 aaattttatttacttctctaatc--agtaatgtgattcttctgcccctatgct 31481970  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 579
Target Start/End: Complemental strand, 37190504 - 37190451
Alignment:
Q  526 taaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    ||||||||||||||||||| ||| |  ||||||||||||||| ||| |||||||    
T  37190504 taaattttatttacttctcgaatatctgtaatgtgattctccagcatctatgct 37190451  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 7413116 - 7413064
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    ||||||| |||||||||| ||| || ||||||||||||||| ||| |||||||    
T  7413116 aaattttttttacttctcgaatatttgtaatgtgattctccagcatctatgct 7413064  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 30825048 - 30824996
Alignment:
Q  527 aaattttatttacttctctaatcttagtaatgtgattctcctgcacctatgct 579  Q
    ||||||||||||||  |||||||| |  ||||||||||||||||| |||||||    
T  30825048 aaattttatttactaatctaatctcatcaatgtgattctcctgcatctatgct 30824996  T

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