View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_21 (Length: 291)
Name: NF2253_low_21
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 2020409 - 2020664
Alignment:
| Q |
20 |
gtgacgacaggcattccttcacaaattatctatggtaagttgtccaaaacactgccatggtggtgccatgaccaccatttagtaacactgctgtcaaaaa |
119 |
Q |
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| T |
2020409 |
gtgacgacaggcattccttcacaaattatctatggtaagttgtccaaaacaccgccatggtggtgccatgaccaccatttagtaacactgctgtcaaaaa |
2020508 |
T |
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| Q |
120 |
gcggttatagtggcactataacagtgcagcgtaagggaatttgaacaagttgctattttttgtgattgacaacactaattttagatgatttatacatatt |
219 |
Q |
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| T |
2020509 |
gcggttatagtggcactataacag-gcagcgtaagggaatttgaacaagttgctattttttgcgattgacaacactaattttagatgatttatacatatt |
2020607 |
T |
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| Q |
220 |
cctgttatagagggttctatgattgcagtctcttctgttcttcttgcccacttgtat |
276 |
Q |
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| T |
2020608 |
cctgttatagagggttctatgattgaagtctcttctgttcttcttgcccacttgtat |
2020664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 2017964 - 2018053
Alignment:
| Q |
73 |
gccatggtggtgccatgaccaccatttagtaacactgctgtcaaaaagcggttatagtggcactataacagtgcagcgtaagggaatttg |
162 |
Q |
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| T |
2017964 |
gccatggtggtgccacgaccaccatttagtaacactgttgtcaaaaagcggttatagtggcgctatgacagtgcagcgtaaagggatttg |
2018053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 2035443 - 2035524
Alignment:
| Q |
122 |
ggttatagtggcactataacagtgcagcgtaagggaatttgaacaagttgctattttttgtgattgacaacactaattttag |
203 |
Q |
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| T |
2035443 |
ggttatagtggggctataacaatgcagcgtaaaggaatttgaacaaattcctattttttgcgattgacaacactgattttag |
2035524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 2018050 - 2018100
Alignment:
| Q |
178 |
tttgtgattgacaacactaattttagatgatttatacatattcctgttata |
228 |
Q |
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| T |
2018050 |
tttgtgattgataacattgattttagatgatttatacatatttgtgttata |
2018100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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