View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2253_low_22 (Length: 260)

Name: NF2253_low_22
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2253_low_22
NF2253_low_22
[»] chr4 (7 HSPs)
chr4 (16-242)||(4524469-4524694)
chr4 (16-217)||(9992706-9992907)
chr4 (16-229)||(42953350-42953563)
chr4 (167-226)||(19647931-19647990)
chr4 (168-226)||(49926125-49926183)
chr4 (168-223)||(8935298-8935353)
chr4 (167-226)||(23657617-23657676)
[»] chr8 (6 HSPs)
chr8 (16-229)||(43253581-43253794)
chr8 (16-229)||(24793822-24794035)
chr8 (16-229)||(11394204-11394416)
chr8 (155-230)||(7555657-7555732)
chr8 (167-226)||(4987924-4987983)
chr8 (152-226)||(36157364-36157438)
[»] chr1 (6 HSPs)
chr1 (16-229)||(20795739-20795952)
chr1 (32-227)||(17827389-17827584)
chr1 (16-229)||(49264820-49265033)
chr1 (16-229)||(39430349-39430562)
chr1 (155-232)||(16873345-16873422)
chr1 (168-226)||(25504852-25504910)
[»] chr7 (8 HSPs)
chr7 (16-228)||(47105467-47105679)
chr7 (24-229)||(31025359-31025564)
chr7 (16-229)||(19728558-19728771)
chr7 (16-229)||(13554034-13554247)
chr7 (134-232)||(17855925-17856023)
chr7 (169-226)||(45992800-45992857)
chr7 (186-238)||(18671411-18671463)
chr7 (186-238)||(36227997-36228049)
[»] chr2 (6 HSPs)
chr2 (16-229)||(10597787-10598000)
chr2 (16-225)||(9668866-9669075)
chr2 (16-199)||(11234350-11234533)
chr2 (183-242)||(36804150-36804209)
chr2 (183-242)||(36804365-36804424)
chr2 (186-238)||(8066073-8066125)
[»] chr3 (6 HSPs)
chr3 (16-188)||(10867771-10867943)
chr3 (16-229)||(20197951-20198164)
chr3 (16-202)||(54439996-54440182)
chr3 (3-229)||(14867641-14867867)
chr3 (187-229)||(10867964-10868006)
chr3 (189-237)||(28308720-28308768)
[»] chr6 (9 HSPs)
chr6 (32-229)||(13085626-13085823)
chr6 (155-232)||(33804991-33805068)
chr6 (155-217)||(11468791-11468853)
chr6 (183-232)||(4474936-4474985)
chr6 (169-226)||(19255864-19255921)
chr6 (169-226)||(33640142-33640199)
chr6 (131-223)||(24378963-24379055)
chr6 (167-226)||(503391-503450)
chr6 (167-226)||(5085885-5085944)
[»] chr5 (6 HSPs)
chr5 (16-229)||(19513321-19513534)
chr5 (16-229)||(4399948-4400161)
chr5 (162-232)||(35122559-35122629)
chr5 (155-218)||(587726-587789)
chr5 (167-226)||(11574553-11574612)
chr5 (167-226)||(22095109-22095168)
[»] scaffold0308 (1 HSPs)
scaffold0308 (155-242)||(17356-17443)
[»] scaffold0112 (1 HSPs)
scaffold0112 (183-238)||(15497-15552)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 4524694 - 4524469
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4524694 tcaaaggaacctgttgatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 4524595  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4524594 tcctatagggtcaggaagccacacctaagtatttgtaatattaggaaacagagaaacatcaagcagaaaagccctacactcctctaagacattctcctcc 4524495  T
Q  216 cacgcccacaacctacgacgccatctc 242  Q
    ||| |||||||||||||| ||||||||    
T  4524494 cacacccacaacctacga-gccatctc 4524469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 9992907 - 9992706
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||  | |||||||||||| |||| |||||||||| | |||| |||| ||   |||||||  | |||||||||||||||||||| | | ||    
T  9992907 tcaaaggaacctaatgatgccaaaccaactccatagcactatccatgttggggttgacatgcactgttagaacctcataagcacctcgaactgtgaaacc 9992808  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||| |   ||| |  |||||| ||||||| || ||||||||||||||||||||||||||||||| | || ||||||||||||||||| | ||| ||||||    
T  9992807 tccaacgaggttaggaagccaaacccaagaatctgtaatattaggaaacagagaaacatcaagcagtaaggccctacactcctctaataaattatcctcc 9992708  T
Q  216 ca 217  Q
    ||    
T  9992707 ca 9992706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 42953563 - 42953350
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||||||||||||||||| ||||| | ||||  ||| || |  |||| |  | |||||||||||||||||||  | | ||    
T  42953563 tcaaaggaacctgatgatgccaaaccaaatccaaagcattatccctgttgggattgacagtcgctgtaaggacctcataagcacctcgaactatgaaacc 42953464  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||| || ||||||  |||||| ||||||| || |  |||| ||||||||| ||||||||||||| | || ||||||||||||||||| | | |||| |||    
T  42953463 tccaatggggtcaggaagccaaacccaagaatctaaaataataggaaacaaagaaacatcaagcagtaaggccctacactcctctaataaactctcttcc 42953364  T
Q  216 cacgcccacaacct 229  Q
    ||||||||||||||    
T  42953363 cacgcccacaacct 42953350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 19647931 - 19647990
Alignment:
Q  167 agaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    ||||||||||||| ||||||||||||||||| |||| |  | ||||||||||||||||||    
T  19647931 agaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 19647990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 49926183 - 49926125
Alignment:
Q  168 gaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    |||||||||||| ||||||||||||||||| |||| |  | ||||||||||||||||||    
T  49926183 gaaacatcaagcagaaaagccctacactccactaacaactcctcctcccacgcccacaa 49926125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 8935298 - 8935353
Alignment:
Q  168 gaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgccca 223  Q
    |||||||||||| ||| |||||||||||||||||| |  | |||||||||||||||    
T  8935298 gaaacatcaagcagaagagccctacactcctctaacatctcctcctcccacgccca 8935353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 23657617 - 23657676
Alignment:
Q  167 agaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    ||||||||||||| ||| || ||||||||||||||| |  | ||||||||||||||||||    
T  23657617 agaaacatcaagcagaagagtcctacactcctctaacaactcctcctcccacgcccacaa 23657676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 43253794 - 43253581
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||| ||||||||| || |  ||||||| | ||||||||||||||||||||| || ||    
T  43253794 tcaaaggaacctgatgatgccaaaccaaatccacagcactatccgtgttggagttgacagtcgctgttaacacctcataagcacctcgaactgaataacc 43253695  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    || ||||||||||  |||||| | ||||| || || ||||| || ||||||||||||||||||| | |||| ||||||||||||||||||| ||||||||    
T  43253694 tcttatagggtcaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaagacaatctcctcc 43253595  T
Q  216 cacgcccacaacct 229  Q
    ||||||||||||||    
T  43253594 cacgcccacaacct 43253581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 24793822 - 24794035
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||||||||||||||||||||||| | ||||  ||| || |  |||| |  | || ||||||||||||||||| | | ||    
T  24793822 tcaaaggaacctgatgatgccaaaccaaatccaaagcactatccctgttgggattgacagtcgctgtaaggaccttataagcacctcgaactgtgaaacc 24793921  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||| || | ||||  |||||| ||||||| || || |||||||||||||| ||||||||||||| | || || |||||||||||||| | |  |||||||    
T  24793922 tccaatggtgtcaggaagccaaacccaagaatctgaaatattaggaaacaaagaaacatcaagcagtaatgctctacactcctctaataaaacctcctcc 24794021  T
Q  216 cacgcccacaacct 229  Q
    ||||||||||||||    
T  24794022 cacgcccacaacct 24794035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 11394416 - 11394204
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||||||||||||||||||||||| | ||||  ||| || |  |||| |  | |||||||||||||||||||  | | ||    
T  11394416 tcaaaggaacctgatgatgccaaaccaaatccaaagcactatccctgttgggattgacagtcgctgtaaggacctcataagcacctcgaactt-gaaacc 11394318  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||| || ||||||  |||||| ||||||| || || |||||||||||||| | |||| |||||| | || ||||||||||||||||| | |  |||||||    
T  11394317 tccaatggggtcaggaagccaaacccaagaatctgaaatattaggaaacaaaaaaacttcaagcagtaaggccctacactcctctaataaaacctcctcc 11394218  T
Q  216 cacgcccacaacct 229  Q
    ||||||||||||||    
T  11394217 cacgcccacaacct 11394204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 7555657 - 7555732
Alignment:
Q  155 attaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaaccta 230  Q
    ||||||||||| ||||||||||| |   |||||||||||||||||||| | ||||||||||||| |||||||||||    
T  7555657 attaggaaacaaagaaacatcaaccaataaagccctacactcctctaataaattctcctcccacacccacaaccta 7555732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 4987983 - 4987924
Alignment:
Q  167 agaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    ||||||||||||| ||||||||||||||||| |||| |  | ||||||||||||||||||    
T  4987983 agaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 4987924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 36157364 - 36157438
Alignment:
Q  152 aatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    |||||||| | ||| ||||||||||||| | |||| |||||||||||||||  | |  |||||||||||||||||    
T  36157364 aatattagcatacaaagaaacatcaagcagtaaagtcctacactcctctaactcctcttcctcccacgcccacaa 36157438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 20795739 - 20795952
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | ||||||||||||||||| ||||||||||||  |||| ||| || |  ||||||| | |||||||||||||| ||| || || ||    
T  20795739 tcaaaggaacctgatgatgccaaaccaaatccacagcactatccgtgatggaattgacagtcgctgttaacacctcataagcacctctaacagaataacc 20795838  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    |||||||||||||  |||||| | ||||| || || ||||| || ||||||||||||||||||| | |||| ||||||||||||||||||| ||||||||    
T  20795839 tcctatagggtcaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaagacaatctcctcc 20795938  T
Q  216 cacgcccacaacct 229  Q
    ||||||||||||||    
T  20795939 cacgcccacaacct 20795952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 17827389 - 17827584
Alignment:
Q  32 atgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccctcctatagggtcaata 131  Q
    ||||||||||||||||| | |||||||| | ||||||||| || |  || |||| | ||||||| ||||||||||||| || |||| ||||||||||  |    
T  17827389 atgccaaaccaaatccacaacactatccatgttggagttgacagtcgcttttaaaacctcataaacacctcgaactgaataacctcatatagggtcagga 17827488  T
Q  132 agccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaac 227  Q
    ||||| ||||||| || | ||||||||| ||||||| ||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||    
T  17827489 agccaaacccaagaatctataatattagtaaacagataaacatcaagcagtaaagtcctacactcctctaagacaatctcctcccacgcccacaac 17827584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 49265033 - 49264820
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||| |||||| | ||||||||||||  |||||||| || |  ||||||| | |||||||||||||| ||| || || ||    
T  49265033 tcaaaggaacctgatgatgccaaatcaaatcaacagcactatccgtgatggagttgacagtcgctgttaacacctcataagcacctctaacagaataacc 49264934  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    |||||| ||||||  |||||| | ||||| || || ||||| || ||||||||||||||||||| | || | ||||||||||||||||||| ||||||||    
T  49264933 tcctatggggtcaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaatgtcctacactcctctaagacaatctcctcc 49264834  T
Q  216 cacgcccacaacct 229  Q
    ||||||||||||||    
T  49264833 cacgcccacaacct 49264820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 39430349 - 39430562
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||| |||||||| ||||||||||||  |||||||| || |  ||||||| | |||||||||||||| ||| || || ||    
T  39430349 tcaaaggaacctgatgatgccaaatcaaatccacagcactatccgtgatggagttgccagtcgctgttaacacctcataagcacctctaacagaataacc 39430448  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||||||||||||   |||||| | ||||| || || ||||| || ||||||||||| ||||||  | |||| ||||||||||||||||||| ||||||||    
T  39430449 tcctatagggtccggaagccaaatccaagaatctgaaatatcagtaaacagagaaatatcaagtagtaaagtcctacactcctctaagacaatctcctcc 39430548  T
Q  216 cacgcccacaacct 229  Q
    ||| ||||||||||    
T  39430549 cacacccacaacct 39430562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 16873422 - 16873345
Alignment:
Q  155 attaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaacctacg 232  Q
    |||||| |||| ||||||||||||| | |||||||||  ||||||||| | | |||||||||| ||||||||||||||    
T  16873422 attaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaaatctcctcccaagcccacaacctacg 16873345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 25504910 - 25504852
Alignment:
Q  168 gaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    |||||||||||| ||||||||||||||||| |||| |  | ||||||||||||||||||    
T  25504910 gaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 25504852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 47105679 - 47105467
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||| |||||||| ||||||||||||  |||||||| || |  ||||||| | |||||||||||||| ||| || || ||    
T  47105679 tcaaaggaacctgatgatgccaaatcaaatccacagcactatccgtgatggagttgccagtcgctgttaacacctcataagcacctctaacagaataacc 47105580  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    |||||||||||    |||||| | ||||| || || ||||| || ||||||||||||||||||| | |||| ||||||||||||||||||| ||||||||    
T  47105579 tcctatagggttcggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaagacaatctcctcc 47105480  T
Q  216 cacgcccacaacc 228  Q
    |||||||||||||    
T  47105479 cacgcccacaacc 47105467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 31025564 - 31025359
Alignment:
Q  24 acctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccctcctatag 123  Q
    ||||| ||||||||||||||||||| |||| ||| ||| ||||||||| || |   |||||| | |||||||||||||| |||||| || ||||||||||    
T  31025564 acctgataatgccaaaccaaatccacagcattattcgtgttggagttgacagtcgttgttaacacctcataagcacctcaaactgaataacctcctatag 31025465  T
Q  124 ggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgccca 223  Q
    | |||  ||| || |  |||  || || ||||| || ||||||||||||||||||  | |||| | ||||||||||||||||| ||||||||||||||||    
T  31025464 gatcaggaaggcaaattcaaaaatctgaaatatcagtaaacagagaaacatcaagtagtaaagtcatacactcctctaagacaatctcctcccacgccca 31025365  T
Q  224 caacct 229  Q
    ||||||    
T  31025364 caacct 31025359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 19728558 - 19728771
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    |||||||||| || | |||||||||||||||||||||||||||| | ||||  ||| ||    |||| |  | |||||||||||||||||||| | | ||    
T  19728558 tcaaaggaacatgatgatgccaaaccaaatccaaagcactatccctgttgggattggcagacgctgtaaggacctcataagcacctcgaactgtgaaacc 19728657  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||| || ||||||  |||||| ||||||  || || |||||||||||||| ||||||||||||  | ||  |||||||||||||||| | |  |||||||    
T  19728658 tccaatggggtcaggaagccaaacccaaaaatctgaaatattaggaaacaaagaaacatcaagtagtaagaccctacactcctctaataaaacctcctcc 19728757  T
Q  216 cacgcccacaacct 229  Q
    ||||||||||||||    
T  19728758 cacgcccacaacct 19728771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 13554247 - 13554034
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||| |||||| | | ||||| || |  |||| ||| || |  |||| || | |||||||||||||| ||  || || ||    
T  13554247 tcaaaggaacctgatgatgccaaatcaaatcaacaacactacccatgatggaattgacagtcgctgtcaacacctcataagcacctctaaaagaataacc 13554148  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||||| |||||||  |||||| |  |||| || || ||||| || ||||||||||||||||||| | |||| ||||||||||||||| |||  |||||||    
T  13554147 tcctaaagggtcaggaagccaaattcaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaatacaacctcctcc 13554048  T
Q  216 cacgcccacaacct 229  Q
    |||| |||||||||    
T  13554047 cacgtccacaacct 13554034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 17855925 - 17856023
Alignment:
Q  134 ccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaacctacg 232  Q
    |||||||||  ||| || || |||||| |||| ||||| ||||||| | |||||| ||  ||||||||| | |||||||||||| ||||||||||||||    
T  17855925 ccacacccatctatctgaaacattaggcaacaaagaaatatcaagcagtaaagccttaagctcctctaataaattctcctcccaagcccacaacctacg 17856023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 45992800 - 45992857
Alignment:
Q  169 aaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    ||||||||||| ||||||||||||||||| |||| |  | ||||||||||||||||||    
T  45992800 aaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 45992857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 18671411 - 18671463
Alignment:
Q  186 gccctacactcctctaagacattctcctcccacgcccacaacctacgacgcca 238  Q
    ||||||||||||||||| | |  ||||||||| |||||||||||||| |||||    
T  18671411 gccctacactcctctaacaaagcctcctcccatgcccacaacctacgccgcca 18671463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 36228049 - 36227997
Alignment:
Q  186 gccctacactcctctaagacattctcctcccacgcccacaacctacgacgcca 238  Q
    ||||||||||||| ||| ||||  ||||||||||||||||  |||||||||||    
T  36228049 gccctacactcctttaacacatcttcctcccacgcccacagtctacgacgcca 36227997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 10597787 - 10598000
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | ||||||||||||||||| | ||||||||||  |||||||| || |  ||||||| | |||||||||||||| ||| || || ||    
T  10597787 tcaaaggaacctgatgatgccaaaccaaatccacaacactatccgtgatggagttgacagtcgctgttaacacctcataagcacctcaaacagaataacc 10597886  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||||||||||| |  |||||| | ||||| || || ||||| || |||||||||||||||||||   || | ||||||||||||||||||| ||||||||    
T  10597887 tcctatagggttaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcaataatgtcctacactcctctaagacaatctcctcc 10597986  T
Q  216 cacgcccacaacct 229  Q
    ||||||||||||||    
T  10597987 cacgcccacaacct 10598000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 9669075 - 9668866
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||| |||||| | |||||||| ||| ||  | |||||| |   |||||| | |||||||||||||| ||| || || |     
T  9669075 tcaaaggaacctgatgatgccaaatcaaatctacagcactattcgtgttttatttgtcagtcgttgttaacacctcataagcacctctaacagaataact 9668976  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    |||||||||||||  |||||| | ||||| || || ||||| || ||||||||||||||||||| | |||| ||||||||||||||||||| ||||||||    
T  9668975 tcctatagggtcaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaagacaatctcctcc 9668876  T
Q  216 cacgcccaca 225  Q
    ||||||||||    
T  9668875 cacgcccaca 9668866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 11234533 - 11234350
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | ||||||||||||| |||  | ||||||| | ||||||||| || |  ||||||| | ||||||||||||||||||||| || ||    
T  11234533 tcaaaggaacctgatgatgccaaaccaaaaccacggtactatccatgttggagttgacagtcgctgttaacacctcataagcacctcgaactgaataacc 11234434  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctc 199  Q
    |||||||||||||  ||  || | ||||| || || |||||||| ||||| ||||||||||||| | |||| ||||||||||||    
T  11234433 tcctatagggtcaggaaaacaaatccaagaatctgaaatattagtaaacaaagaaacatcaagcagtaaagtcctacactcctc 11234350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 36804150 - 36804209
Alignment:
Q  183 aaagccctacactcctctaagacattctcctcccacgcccacaacctacgacgccatctc 242  Q
    |||||||||||||||||||| |  | ||||||||||||||||||||| ||||||||||||    
T  36804150 aaagccctacactcctctaacaagtcctcctcccacgcccacaaccttcgacgccatctc 36804209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 36804365 - 36804424
Alignment:
Q  183 aaagccctacactcctctaagacattctcctcccacgcccacaacctacgacgccatctc 242  Q
    |||||||||||||||||||| |  | ||||||||||||| ||||||| ||||||||||||    
T  36804365 aaagccctacactcctctaacaagtcctcctcccacgcctacaaccttcgacgccatctc 36804424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 8066125 - 8066073
Alignment:
Q  186 gccctacactcctctaagacattctcctcccacgcccacaacctacgacgcca 238  Q
    ||||||||||||||||  | |  |||||||||||||||||||||||| |||||    
T  8066125 gccctacactcctctagcatagcctcctcccacgcccacaacctacgccgcca 8066073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 10867771 - 10867943
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | ||||||||||||||||||||||||||||   ||||||||| || |  |||||| || |||||||||||||||||||||||| ||    
T  10867771 tcaaaggaacctgatgatgccaaaccaaatccaaagcactatccaagttggagttgacagtcgctgttagtatctcataagcacctcgaactgagtaacc 10867870  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagcc 188  Q
    ||||||||||| |  |||||| | ||||| || |||||||||||||||||||||||||| |||| | ||||||    
T  10867871 tcctatagggttaggaagccaaatccaagaatctgtaatattaggaaacagagaaacattaagcagtaaagcc 10867943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 20198164 - 20197951
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    |||||||||| || | ||| ||||||||||||| |||||||| ||| ||||| ||| || |  ||||||| | |||||||||||||| |||||| || ||    
T  20198164 tcaaaggaacttgatgatgtcaaaccaaatccacagcactatacgtgttggaattgacagtcgctgttaacacctcataagcacctcaaactgaataacc 20198065  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||||||| || ||  |||||| | ||||| || || ||||| || ||||||||||||||||||| | |||| ||| ||||||||||||||| ||||||||    
T  20198064 tcctatatggccaggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctgcactcctctaagacaatctcctcc 20197965  T
Q  216 cacgcccacaacct 229  Q
    ||| ||||||||||    
T  20197964 cacacccacaacct 20197951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 54440182 - 54439996
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtat-tggagttgtcaataactgttaatagctcataagcacctcgaactgagtacc 114  Q
    |||||||||||||   ||||||||| |  |||||||||||||||  |  |||| ||||||| |||||||||||  ||||||||||||||||| ||||| |    
T  54440182 tcaaaggaacctgacgatgccaaactaggtccaaagcactatccacagatgga-ttgtcaaaaactgttaataagtcataagcacctcgaacagagtaac 54440084  T
Q  115 ctcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaa 202  Q
    ||||||| ||||||  |||||||| |||||||| || || | || ||||||||| |||||||||| | ||||||||||||||||||||    
T  54440083 ctcctatggggtcaggaagccacatccaagtatctgaaacaatatgaaacagagcaacatcaagcagtaaagccctacactcctctaa 54439996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 14867867 - 14867641
Alignment:
Q  3 gagatggacatcatcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctc 102  Q
    ||||| || ||| ||||||||||||| | |||||||||||||||||||||||||||| | ||||  ||| ||    |||  |  | ||||||||||||||    
T  14867867 gagattgaaatcttcaaaggaacctgatgatgccaaaccaaatccaaagcactatccctgttgggattggcagacgctgcaaggacctcataagcacctc 14867768  T
Q  103 gaactgagtaccctcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaa 202  Q
    |||||| | | ||||| || ||||||  |||||| ||||||| || || ||||||||||| || ||||||||||||    || |||||||||||||||||    
T  14867767 gaactgtgaaacctccaatggggtcaggaagccaaacccaagaatctgaaatattaggaaccaaagaaacatcaagtattaaggccctacactcctctaa 14867668  T
Q  203 gacattctcctcccacgcccacaacct 229  Q
     | |  |||||||||||||||||||||    
T  14867667 taaaacctcctcccacgcccacaacct 14867641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 10867964 - 10868006
Alignment:
Q  187 ccctacactcctctaagacattctcctcccacgcccacaacct 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  10867964 ccctacactcctctaagacattctcctcccacacccacaacct 10868006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 28308720 - 28308768
Alignment:
Q  189 ctacactcctctaagacattctcctcccacgcccacaacctacgacgcc 237  Q
    ||||||||| ||||||  | |||||||||||||||||||||||| ||||    
T  28308720 ctacactcccctaagatctcctcctcccacgcccacaacctacgccgcc 28308768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 13085626 - 13085823
Alignment:
Q  32 atgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccctcctatagggtcaata 131  Q
    ||||||||||||||||| || ||||||| | ||||| |   || |  ||||||| | |||||||||||||||||||||  | |||||||||||||||  |    
T  13085626 atgccaaaccaaatccacagaactatccatgttggaatgagcagtcgctgttaacacctcataagcacctcgaactgaaaaacctcctatagggtcagga 13085725  T
Q  132 agccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaacct 229  Q
    ||||| | ||||| || || |||||  | ||||| ||||||||||||| | |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  13085726 agccaaatccaagaatctgaaatatcggtaaacaaagaaacatcaagcagtaaagtcctacactcctctaggacaatctcctcccacgcccacaacct 13085823  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 33804991 - 33805068
Alignment:
Q  155 attaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaacctacg 232  Q
    |||||| |||| ||||||||||||| | |||||||||  ||||||||| | |||||||||||| ||||||||||||||    
T  33804991 attaggcaacaaagaaacatcaagcagtaaagccctaagctcctctaataaattctcctcccaagcccacaacctacg 33805068  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 11468791 - 11468853
Alignment:
Q  155 attaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctccca 217  Q
    |||||||| |||||||||||||| | |||||||||||||||| ||||  | ||||||||||||    
T  11468791 attaggaaccagagaaacatcaaacagaaaagccctacactcgtctagtaaattctcctccca 11468853  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 4474936 - 4474985
Alignment:
Q  183 aaagccctacactcctctaagacattctcctcccacgcccacaacctacg 232  Q
    |||| |||| |||||||||| | |||||||||||||||||||||||||||    
T  4474936 aaagtcctaaactcctctaataaattctcctcccacgcccacaacctacg 4474985  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 19255864 - 19255921
Alignment:
Q  169 aaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    ||||||||||| ||||||||||||||||| |||| |  | ||||||||||||||||||    
T  19255864 aaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 19255921  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 33640142 - 33640199
Alignment:
Q  169 aaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    ||||||||||| ||||||||||||||||| |||| |  | ||||||||||||||||||    
T  33640142 aaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaa 33640199  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 24378963 - 24379055
Alignment:
Q  131 aagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgccca 223  Q
    ||||||| ||||||||| || ||||||||||| |||||| | |||||   | || ||||||||||||||||| | |  |||||||||||||||    
T  24378963 aagccactcccaagtatctgaaatattaggaaccagagagatatcaaatagtaacgccctacactcctctaataaaagctcctcccacgccca 24379055  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 503450 - 503391
Alignment:
Q  167 agaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    ||||||||||||| ||||||||||||||||| |||| |  | ||||||||||||| ||||    
T  503450 agaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcctacaa 503391  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 5085944 - 5085885
Alignment:
Q  167 agaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    |||||||| |||| ||| |||||||||||||||||| |  | ||||||||||||||||||    
T  5085944 agaaacattaagcagaagagccctacactcctctaacatctcctcctcccacgcccacaa 5085885  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 19513534 - 19513321
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||||||||||||||||||||||| | ||||  ||| || |  |||| |  | |||||||||||||||||||| | | ||    
T  19513534 tcaaaggaacctgatgatgccaaaccaaatccaaagcactatccctgttgggattgacagtcgctgtaaggacctcataagcacctcgaactgtgaaacc 19513435  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||| ||  |||||  |||||| ||||||| || || |||||||||||||| ||||| ||||||| | || ||||||||||||||||  | |  |||||||    
T  19513434 tccaatgtggtcaggaagccaaacccaagaatctgaaatattaggaaacaaagaaatatcaagcagtaatgccctacactcctctagtaaaacctcctcc 19513335  T
Q  216 cacgcccacaacct 229  Q
    ||||||||||||||    
T  19513334 cacgcccacaacct 19513321  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 4399948 - 4400161
Alignment:
Q  16 tcaaaggaacctgctaatgccaaaccaaatccaaagcactatccgtattggagttgtcaataactgttaatagctcataagcacctcgaactgagtaccc 115  Q
    ||||||||||||| | |||||||||||| ||||||||||||||| | ||||  ||| || |  |||| |  | |||||||||||||||||||  | | ||    
T  4399948 tcaaaggaacctgatgatgccaaaccaattccaaagcactatccttgttgggattgacagtcgctgtaaggacctcataagcacctcgaactttgaaacc 4400047  T
Q  116 tcctatagggtcaataagccacacccaagtatttgtaatattaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcc 215  Q
    ||| || ||||||  |||||| ||||||| || || |||||||||||||| ||||||||||||| | ||  |||||||||||||||| | |  |||||||    
T  4400048 tccaatggggtcaggaagccaaacccaagaatctgaaatattaggaaacaaagaaacatcaagcagtaagaccctacactcctctaataaaccctcctcc 4400147  T
Q  216 cacgcccacaacct 229  Q
    ||||  ||||||||    
T  4400148 cacgttcacaacct 4400161  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 35122629 - 35122559
Alignment:
Q  162 aacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaacctacg 232  Q
    |||| ||||||||||||| | |||||||||  ||||||||| | | |||||||||| ||||||||||||||    
T  35122629 aacaaagaaacatcaagcagtaaagccctaagctcctctaataaagtctcctcccaagcccacaacctacg 35122559  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 587726 - 587789
Alignment:
Q  155 attaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccac 218  Q
    ||||||| ||| ||||||||||||  | |||||||||||||||||||| | || ||||||||||    
T  587726 attaggatacaaagaaacatcaagaagtaaagccctacactcctctaacatatcctcctcccac 587789  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 11574612 - 11574553
Alignment:
Q  167 agaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    ||||||||||| | ||| |||||||||||||||||| |  | ||||||||||||||||||    
T  11574612 agaaacatcaaacagaagagccctacactcctctaacatctcctcctcccacgcccacaa 11574553  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 22095168 - 22095109
Alignment:
Q  167 agaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaa 226  Q
    ||||||||||||| ||| ||||||| |||||||||| |  | ||||||||||||||||||    
T  22095168 agaaacatcaagcagaagagccctaaactcctctaacaactcctcctcccacgcccacaa 22095109  T

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Target: scaffold0308 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 17356 - 17443
Alignment:
Q  155 attaggaaacagagaaacatcaagcggaaaagccctacactcctctaagacattctcctcccacgcccacaacctacgacgccatctc 242  Q
    |||||| |||| ||||||||| ||| | |||||||||  ||||||||| | |||||||||||  |||||||||||||| | |||||||    
T  17356 attaggcaacaaagaaacatccagcagtaaagccctaagctcctctaataaattctcctccccagcccacaacctacgtctccatctc 17443  T

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Target: scaffold0112 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 15552 - 15497
Alignment:
Q  183 aaagccctacactcctctaagacattctcctcccacgcccacaacctacgacgcca 238  Q
    |||||||||||||||||||| | || |||||||||||||||||| || ||||||||    
T  15552 aaagccctacactcctctaacatatcctcctcccacgcccacaatctgcgacgcca 15497  T

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