View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_29 (Length: 236)
Name: NF2253_low_29
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38951610 - 38951708
Alignment:
| Q |
1 |
tcttaagcaatctgctacgttgcagcagctctctttacaaaacaaaagattataaataaggattaaaattgaaattatgagggatgatgaaacaatagc |
99 |
Q |
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| T |
38951610 |
tcttaagcaatctgctacgttgcagcagctctctttacaaaacaaaagattataaataaggattaaaattgaaattatgagggatgatgaaacaatagc |
38951708 |
T |
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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 15995729 - 15995827
Alignment:
| Q |
1 |
tcttaagcaatctgctacgttgcagcagctctctttacaaaacaaaagattataaataaggattaaaattgaaattatgagggatgatgaaacaatagc |
99 |
Q |
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| T |
15995729 |
tcttaagcaatctgctacgttgcagcaactctctttacaaaacaaaagattataaataaggattaaaattgaaattatgagggatgatgaaacaatagc |
15995827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 51385941 - 51385992
Alignment:
| Q |
46 |
aagattataaataaggattaaaattgaa--attatgagggatgatgaaacaa |
95 |
Q |
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| T |
51385941 |
aagattataaataaggaataaaattgaaagagaatgagggatgatgaaacaa |
51385992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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