View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_30 (Length: 234)
Name: NF2253_low_30
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 35378365 - 35378142
Alignment:
| Q |
7 |
gtttgtggcctttgattttgctcatgctcaaccaacaagagcnnnnnnnnnnnnnggtgattcaatagcagataatggcaacaatcatttcctattaacc |
106 |
Q |
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| T |
35378365 |
gtttgtggcctttgattttgctcatgctcaaccaacaagagcttttttcgtttttggtgattcaatagcagataatggcaacaatcatttcctattaacc |
35378266 |
T |
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| Q |
107 |
actgctcgtgctgatactcccccatatggcattgatttccctacgcacaaacctactggacgtttctctaatggcctaaacattcctgatataatcagta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35378265 |
actgctcgtgctgatactcccccatatggcattgatttccctacgcacaaacctactggacgtttctctaatggcctaaacattcctgatataatcagta |
35378166 |
T |
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| Q |
207 |
tgagtttaatttgttattagctta |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
35378165 |
tgagtttaatttgttattagctta |
35378142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 35372718 - 35372495
Alignment:
| Q |
7 |
gtttgtggcctttgattttgctcatgctcaaccaacaagagcnnnnnnnnnnnnnggtgattcaatagcagataatggcaacaatcatttcctattaacc |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||| |
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| T |
35372718 |
gtttatggcctttgattttgctcatgctcaaccaacaagagcttttttcgtttttggtgattcactagcagataatggcaacaatcatttattatttacc |
35372619 |
T |
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| Q |
107 |
actgctcgtgctgatactcccccatatggcattgatttccctacgcacaaacctactggacgtttctctaatggcctaaacattcctgatataatcagta |
206 |
Q |
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| T |
35372618 |
acattacgtgctgattttcccccatatggaattgattaccctacacacaaacccaccggacgtttctctaatggcctaaatattcctgacataatcagta |
35372519 |
T |
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| Q |
207 |
tgagtttaatttgttattagctta |
230 |
Q |
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| T |
35372518 |
tgtgtttaacttgttcttaactta |
35372495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 35359385 - 35359220
Alignment:
| Q |
62 |
ggtgattcaatagcagataatggcaacaatcatttcctattaaccactgctcgtgctgatactcccccatatggcattgatttccctacgcacaaaccta |
161 |
Q |
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||||||||| ||||||| |||||||| ||| ||||| || |||||| |||||||| ||| |||| |||||||||||||| |||||||| ||| |||| | |
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| T |
35359385 |
ggtgattcagtagcagacaatggcaataataatttcttaacaaccacagctcgtgcagatgctccaccatatggcattgacttccctacacacgaaccca |
35359286 |
T |
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| Q |
162 |
ctggacgtttctctaatggcctaaacattcctgatataatcagtatgagtttaatttgttattagc |
227 |
Q |
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| T |
35359285 |
ctggacgtttttctaatggcctaaatattcctgacctaactagtatgtgcttaatttgttattagc |
35359220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 35355305 - 35355231
Alignment:
| Q |
131 |
tatggcattgatttccctacgcacaaacctactggacgtttctctaatggcctaaacattcctgatataatcagt |
205 |
Q |
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| T |
35355305 |
tatggcattgattttccaactcgtcaacccactggacgtttctccaatggcttaaacgttcctgatttaatcagt |
35355231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 28849825 - 28849973
Alignment:
| Q |
66 |
attcaatagcagataatggcaacaatcatttcctattaaccactgctcgtgctgatactcccccatatggcattgatttccctacgcacaaacctactgg |
165 |
Q |
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||||||| |||||||||||||||||||||||| |||||| ||| |||||| | ||||||| ||||| |||| |||||||||| ||||||| || | |
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| T |
28849825 |
attcaatggcagataatggcaacaatcatttcttattaatcacattacgtgctcacactcccctatatgacattaatttccctacacacaaactcaccga |
28849924 |
T |
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| Q |
166 |
acgtttctctaatggcctaaacattcctgatataatcagtatgagttta |
214 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||| ||||| |
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| T |
28849925 |
acgtttctctaatggcctaaacattcatgacataatcagtatgtgttta |
28849973 |
T |
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