View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_35 (Length: 202)
Name: NF2253_low_35
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 38279967 - 38279796
Alignment:
| Q |
15 |
gatgaatatataatttgacttttcaatatatccacaacacaatgtgagttgaatttgatcaaagctgtctaaacacatgttcagattttaatatccgaaa |
114 |
Q |
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| T |
38279967 |
gatgaatatataatttgacttttcaatatatccgcaacacaatgtgagttgaatttgatcaaagctgtctaaacacatgttcagattttaatatccgaaa |
38279868 |
T |
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| Q |
115 |
aatttcaattacactttggattataaaatctaaacaaaaacaaaatgatcaatttgaaggacgtgcgaaaag |
186 |
Q |
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| T |
38279867 |
aatttcaattacactttggtttataaaatctaaacaaaaacaaaatgatcaatttgaaggacgtgcaaaaag |
38279796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 38274227 - 38274121
Alignment:
| Q |
63 |
ttgaatttgatcaaagctgtctaaacacatgttcagattttaatatccgaaaaatttcaattacactttggattataaaatctaaacaaaaacaaaatga |
162 |
Q |
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| T |
38274227 |
ttgaatttgatcaaaattgtataaataca-gttcagattttataatctaaaaaatgtcaaatactctttggattataaaatccaaataaaggtaaaatga |
38274129 |
T |
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| Q |
163 |
tcaatttg |
170 |
Q |
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| T |
38274128 |
tcaatttg |
38274121 |
T |
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