View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_5 (Length: 427)
Name: NF2253_low_5
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_5 |
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| [»] scaffold0559 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 40782279 - 40781888
Alignment:
| Q |
17 |
acatgaggtatcatttcagagacgatatataatatttatgtctggactctggattgaacagactctggtgagatggatcatggctagggaagagaaatca |
116 |
Q |
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| T |
40782279 |
acatgaggtatcatttcagaaacgatatataatatttatgtctgga-------ttgaacagactctggtgagatggatcatggctagggaagagaaatca |
40782187 |
T |
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| Q |
117 |
cattgaaatccaactcacagtcccaaaatctaaatgtaaacaaacatgagtgcactattgttannnnnnnncataaataggtgggggacaattagtagat |
216 |
Q |
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| T |
40782186 |
cattgaaatccaactcacagtcccaaaatctaaatgtaaacaaacatgagtgcactattgttattttttt-cataaataggtggggggcaattagtagat |
40782088 |
T |
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| Q |
217 |
ggcaactgcacccttattctgtataaggcccaacatgtacttagcgagctaggccacatcatttgatgtaggtactttcgttttcccctatgcagtttgg |
316 |
Q |
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| T |
40782087 |
ggcaactgcccccttgttctgtataaggcccaacatgtacttggcgagctaggccatatcatttgatgtaggtaccttcgtttttccctatgcagttcgg |
40781988 |
T |
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| Q |
317 |
attataaatgatactaagcgaatctcattaannnnnnnnatctatctcctaataaatgnnnnnnntaatatctgaactcatggacataacaacaccctat |
416 |
Q |
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| T |
40781987 |
attataaatgataccaagcggatcccattaattttttttatctatctcctaataaatgaaaaaaa-aatatctgaactcacggacataacaacaccctat |
40781889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 10325 - 10000
Alignment:
| Q |
17 |
acatgaggtatcatttcagagacgatatataatatttatgtctggactctggattgaacagactctggtgagatggatcatggctagggaagagaaatca |
116 |
Q |
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| T |
10325 |
acatgaggtatcatttcagaaacgatatataatatttatgtctgga-------ttgaacagactctggtgagatggatcatggctagggaagagaaatca |
10233 |
T |
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| Q |
117 |
cattgaaatccaactcacagtcccaaaatctaaatgtaaacaaacatgagtgcactattgttannnnnnnncataaataggt-gggggacaattagtaga |
215 |
Q |
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| T |
10232 |
cattgaaatccaactcacagtcccaaaatctaaatgtaaacaaacatgagtgcactattgttattttttttcataaataggtgggggggcaattagtaga |
10133 |
T |
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| Q |
216 |
tggcaactgcacccttattctgtataaggcccaacatgtacttagcgagctaggccacatcatttgatgtaggta-ctttcg---ttttcccctatgcag |
311 |
Q |
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| T |
10132 |
tggcaactgcccccttgttctgtataaggcccaacatgtacttggcgagctaggccatatcatttgatgtaggtacctttcgtttttttcccttatgcag |
10033 |
T |
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| Q |
312 |
tttggattataaatgatactaagcgaatctcatt |
345 |
Q |
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| T |
10032 |
ttcggattat-aatgataccaagcggatcccatt |
10000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 9958 - 9924
Alignment:
| Q |
383 |
aatatctgaactcatggacataacaacaccctatg |
417 |
Q |
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| T |
9958 |
aatatctgaactcacggacataacaacaccctatg |
9924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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