View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_6 (Length: 424)
Name: NF2253_low_6
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 210 - 413
Target Start/End: Original strand, 7581611 - 7581814
Alignment:
| Q |
210 |
ttggtagtgtagagctagcttttgttattgagtaagtcaaaatccaaattctgatgacaaatgtgttctctgctgcaggtagcaagtgctacatcaacat |
309 |
Q |
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| T |
7581611 |
ttggtagtgtagagctagcttttgttattgagtaagtcaaaatccaaattctgataacgaatgtgttctctgctgcaggtagcaagtgctacatcaacat |
7581710 |
T |
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| Q |
310 |
tttccatgcttttttcatcctccatgtccgtagtgcaatattactatttagatcgcttccccgtaccttacggtaaatagtttttcggttatttgttata |
409 |
Q |
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| T |
7581711 |
tttccatgcttttttcatcctccatgtcagtagtgcaatattactatttagatcgcttccccgtaccttacggtaaatagtttttcggttatttgttata |
7581810 |
T |
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| Q |
410 |
tttg |
413 |
Q |
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|||| |
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| T |
7581811 |
tttg |
7581814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 246 - 413
Target Start/End: Original strand, 7571426 - 7571593
Alignment:
| Q |
246 |
tcaaaatccaaattctgatgacaaatgtgttctctgctgcaggtagcaagtgctacatcaacattttccatgcttttttcatcctccatgtccgtagtgc |
345 |
Q |
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| T |
7571426 |
tcaaaatccaaattctaataccaaatttgttctctactgcaggtagcaagtgctacatcaacattttccatgcttttttcatcctccatgtcagtagtgc |
7571525 |
T |
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| Q |
346 |
aatattactatttagatcgcttccccgtaccttacggtaaatagtttttcggttatttgttatatttg |
413 |
Q |
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| T |
7571526 |
aatattactatttagatcgcttcccagtgccttacggtaaatagtttctacgttatttgttatatttg |
7571593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 33123889 - 33123803
Alignment:
| Q |
284 |
gcaggtagcaagtgctacatcaacattttccatgcttttttcatcctccatgtccgtagtgcaatattactatttagatcgcttccc |
370 |
Q |
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||||||||| |||||||||||||| ||| | ||| |||| || ||||||||||| || || |||||||| || ||||||||||||| |
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| T |
33123889 |
gcaggtagctagtgctacatcaacttttgctatggttttctcttcctccatgtcagtggtacaatattatcatctagatcgcttccc |
33123803 |
T |
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