View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2253_low_9 (Length: 367)
Name: NF2253_low_9
Description: NF2253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2253_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 6100071 - 6099746
Alignment:
| Q |
1 |
attagaagcaaatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaattacaaacacatac |
100 |
Q |
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| T |
6100071 |
attagaagcaaatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaattacaaacacatac |
6099972 |
T |
|
| Q |
101 |
tttgtcattatgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgtcacacattagtaaaccaaggata |
200 |
Q |
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| T |
6099971 |
tttgtcattatgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgtcacacattagtaaaccaaggata |
6099872 |
T |
|
| Q |
201 |
tggaatttgtaagttcatacacagtcttcaaaatagttgtgtccaaggatcaagttctcgacgaataactcatgaattatacttgtaacattcatcgcat |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6099871 |
tggaatttgtaagttcatacacagtctgcaaaatagttgtctccaaggatcaagttctcgacgaataactcatgaattatacttgtaacattcatcgcat |
6099772 |
T |
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| Q |
301 |
ggacctttgtttaccaaacctttaata |
327 |
Q |
| |
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||||| ||||||||||||||||||||| |
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| T |
6099771 |
ggacc-ttgtttaccaaacctttaata |
6099746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 28055476 - 28055809
Alignment:
| Q |
1 |
attagaagcaaatgaaaaggcaaataagagtacaattgggatggtaacaacaatttcagcaaaggaaattacatcagggtgcctaattacaaacacatac |
100 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||| | |
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| T |
28055476 |
attagaagcaaatgaaaaggcaaataaga-taaaattgggatggtaacaacgatctcagcaaaggaaattacatcagggtgctcaattacaaacgcatgc |
28055574 |
T |
|
| Q |
101 |
tttgtcattatgttttcatgctcttttaaactacaaaacaatcattcaaagcattccaactttagtaaatttcatgt-------cacacattagtaaacc |
193 |
Q |
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||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||| |
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| T |
28055575 |
tttgtcattctatttttatgctcttttaaactacaaaacaatcattcaaagcattccacctttagtaaattccgagttgacaacaacacattagtaaacc |
28055674 |
T |
|
| Q |
194 |
aaggatatggaatttgtaagttcatacacagtcttcaaaatagttgt-gtccaaggatcaagttctcgacgaataactcatgaattatacttgtaacatt |
292 |
Q |
| |
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|||| | ||| || ||||||||||||| |||| |||||||||||| |||||||||||||||| |||| ||||||||| |||| | |||||||| ||| |
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| T |
28055675 |
taggaaaaggagttcgtaagttcatacatggtctgcaaaatagttgtattccaaggatcaagttcccgacaaataactcaggaatgacacttgtaatatt |
28055774 |
T |
|
| Q |
293 |
catcgcatggacctttgtttaccaaacctttaata |
327 |
Q |
| |
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||||||||||||||| ||||||||||| |||||| |
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| T |
28055775 |
catcgcatggaccttgttttaccaaaccattaata |
28055809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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