View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2254_high_4 (Length: 320)

Name: NF2254_high_4
Description: NF2254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2254_high_4
NF2254_high_4
[»] chr6 (12 HSPs)
chr6 (1-315)||(357159-357473)
chr6 (15-165)||(31954809-31954959)
chr6 (12-168)||(3768073-3768229)
chr6 (8-65)||(2588786-2588843)
chr6 (81-142)||(33558275-33558336)
chr6 (211-315)||(4206248-4206352)
chr6 (211-271)||(45321-45381)
chr6 (132-168)||(11752930-11752966)
chr6 (243-315)||(34304848-34304920)
chr6 (211-270)||(32116085-32116144)
chr6 (211-266)||(32120329-32120384)
chr6 (132-168)||(7509633-7509669)
[»] chr4 (19 HSPs)
chr4 (12-168)||(37861187-37861343)
chr4 (8-172)||(16692094-16692258)
chr4 (12-168)||(46963829-46963985)
chr4 (38-144)||(2319166-2319272)
chr4 (8-143)||(19399855-19399989)
chr4 (13-140)||(44540114-44540242)
chr4 (12-144)||(30468668-30468802)
chr4 (97-171)||(38502163-38502237)
chr4 (12-109)||(46362766-46362863)
chr4 (52-159)||(45891830-45891938)
chr4 (90-173)||(27381959-27382042)
chr4 (12-169)||(30666856-30667013)
chr4 (15-170)||(30617538-30617693)
chr4 (211-271)||(53170893-53170953)
chr4 (235-315)||(3330301-3330381)
chr4 (15-147)||(51164523-51164655)
chr4 (132-168)||(3528014-3528050)
chr4 (21-65)||(10401535-10401579)
chr4 (211-271)||(16957931-16957991)
[»] chr7 (21 HSPs)
chr7 (15-169)||(16831564-16831718)
chr7 (7-132)||(47375800-47375924)
chr7 (30-143)||(30003785-30003898)
chr7 (27-135)||(21212671-21212777)
chr7 (8-166)||(12879649-12879808)
chr7 (16-135)||(39511188-39511307)
chr7 (100-169)||(42244391-42244460)
chr7 (211-267)||(5827653-5827709)
chr7 (10-169)||(20011227-20011385)
chr7 (18-168)||(38850519-38850673)
chr7 (214-271)||(32585542-32585599)
chr7 (211-271)||(4501653-4501713)
chr7 (235-271)||(19277687-19277723)
chr7 (211-267)||(45613494-45613550)
chr7 (90-168)||(18700028-18700106)
chr7 (211-268)||(10905501-10905558)
chr7 (90-168)||(27390150-27390228)
chr7 (132-170)||(32786924-32786962)
chr7 (131-169)||(33645162-33645200)
chr7 (72-145)||(32948311-32948384)
chr7 (96-168)||(41894652-41894724)
[»] chr2 (24 HSPs)
chr2 (12-165)||(5577991-5578144)
chr2 (8-140)||(20556766-20556897)
chr2 (13-169)||(35977314-35977470)
chr2 (11-143)||(34074146-34074279)
chr2 (12-129)||(26009595-26009713)
chr2 (212-271)||(20142393-20142452)
chr2 (211-300)||(4412718-4412807)
chr2 (211-271)||(17345033-17345093)
chr2 (211-315)||(28225351-28225455)
chr2 (89-140)||(3095779-3095830)
chr2 (90-165)||(37980410-37980485)
chr2 (211-308)||(44686776-44686872)
chr2 (211-303)||(9685067-9685159)
chr2 (90-178)||(21620625-21620713)
chr2 (91-159)||(28631687-28631755)
chr2 (211-267)||(41867560-41867616)
chr2 (81-148)||(9707131-9707198)
chr2 (211-266)||(33612193-33612248)
chr2 (81-163)||(43592740-43592822)
chr2 (28-136)||(4570744-4570851)
chr2 (129-165)||(9950400-9950436)
chr2 (132-168)||(13748197-13748233)
chr2 (235-271)||(19161501-19161537)
chr2 (12-126)||(22348687-22348800)
[»] chr8 (13 HSPs)
chr8 (12-169)||(7637600-7637756)
chr8 (26-170)||(18181666-18181809)
chr8 (12-145)||(7042597-7042730)
chr8 (33-169)||(114088-114224)
chr8 (12-125)||(39699442-39699556)
chr8 (8-170)||(43108600-43108760)
chr8 (91-168)||(43351941-43352018)
chr8 (211-267)||(24125427-24125483)
chr8 (211-267)||(39435066-39435122)
chr8 (94-173)||(9399623-9399702)
chr8 (89-168)||(44813944-44814022)
chr8 (211-309)||(500584-500682)
chr8 (131-168)||(374337-374374)
[»] chr1 (21 HSPs)
chr1 (8-145)||(34462742-34462879)
chr1 (12-118)||(18919282-18919388)
chr1 (12-171)||(1640152-1640308)
chr1 (26-130)||(40619520-40619624)
chr1 (8-148)||(37705333-37705473)
chr1 (90-171)||(45948871-45948952)
chr1 (21-118)||(24439145-24439242)
chr1 (43-126)||(2144576-2144661)
chr1 (90-168)||(30512558-30512636)
chr1 (90-172)||(34967721-34967803)
chr1 (8-129)||(8301697-8301818)
chr1 (99-144)||(51540791-51540836)
chr1 (50-130)||(47853508-47853591)
chr1 (28-63)||(28924126-28924161)
chr1 (236-271)||(34644961-34644996)
chr1 (211-301)||(22347242-22347332)
chr1 (21-65)||(1607354-1607398)
chr1 (128-168)||(1780508-1780548)
chr1 (132-168)||(16394959-16394995)
chr1 (15-67)||(26758486-26758538)
chr1 (112-168)||(30058471-30058527)
[»] chr5 (20 HSPs)
chr5 (12-143)||(523652-523783)
chr5 (8-159)||(5735968-5736120)
chr5 (15-142)||(30240-30367)
chr5 (12-117)||(15472837-15472942)
chr5 (12-77)||(6825441-6825506)
chr5 (43-167)||(19521462-19521586)
chr5 (211-271)||(433687-433747)
chr5 (211-271)||(13166562-13166622)
chr5 (211-303)||(15291675-15291767)
chr5 (211-271)||(26212235-26212295)
chr5 (211-303)||(35310811-35310903)
chr5 (34-123)||(14631489-14631579)
chr5 (49-141)||(4400394-4400484)
chr5 (211-304)||(27337055-27337148)
chr5 (23-159)||(3494472-3494608)
chr5 (131-166)||(8041037-8041072)
chr5 (43-117)||(23263006-23263079)
chr5 (53-171)||(12453854-12453966)
chr5 (211-267)||(6534215-6534271)
chr5 (132-172)||(33741594-33741634)
[»] chr3 (16 HSPs)
chr3 (36-159)||(39625066-39625189)
chr3 (12-127)||(39956153-39956267)
chr3 (50-163)||(11076901-11077014)
chr3 (89-167)||(32024301-32024379)
chr3 (43-171)||(50129086-50129215)
chr3 (49-168)||(5050551-5050669)
chr3 (211-271)||(52411554-52411614)
chr3 (15-172)||(50170444-50170603)
chr3 (235-271)||(53786103-53786139)
chr3 (12-147)||(41242157-41242292)
chr3 (131-172)||(34408161-34408202)
chr3 (44-124)||(45318207-45318288)
chr3 (138-167)||(45628451-45628480)
chr3 (90-159)||(50164065-50164134)
chr3 (235-267)||(7501814-7501846)
chr3 (235-271)||(29862192-29862228)
[»] scaffold0024 (1 HSPs)
scaffold0024 (15-168)||(33153-33307)
[»] scaffold0192 (1 HSPs)
scaffold0192 (50-162)||(13423-13535)
[»] scaffold0186 (1 HSPs)
scaffold0186 (211-266)||(20121-20176)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 357159 - 357473
Alignment:
Q  1 cttaaggaagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaataca 100  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  357159 cttaaggaagacacaaatttagaagccaaatgtagaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaataca 357258  T
Q  101 aaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccataatgtaattatttttaaagttagctttgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  357259 aaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccataatgtaattatttttaaagttagcgttgat 357358  T
Q  201 tgtgtcatgtttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagt 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||| |||||| ||||| ||||    
T  357359 tgtgtcatgtttgatgaggtgtgtcctttttgacgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagatttctggtttaaagt 357458  T
Q  301 acatgcatgcctttg 315  Q
    |||||||||||||||    
T  357459 acatgcatgcctttg 357473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 31954809 - 31954959
Alignment:
Q  15 aagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtttta 114  Q
    |||||||||| ||||||||||||| ||| ||||  ||||| ||||| |||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  31954809 aagtttagaagccaaatgtaaaaacttaattttagaaattatgcatacaatgtcttgaaaatttaaaaacttattttttcaatacaaaacttatgtttta 31954908  T
Q  115 attcgttttttagatctttaacttgtgcccttaggacacaagttagcatga 165  Q
    |||| ||||||||| ||||||||||||||| | |||||||||||| |||||    
T  31954909 attccttttttagaactttaacttgtgcccattggacacaagttaacatga 31954959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 3768073 - 3768229
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaactta-gtttttcaatacaaaacttatgt 110  Q
    ||||||||||| |  ||| |||||||| ||||||||| |||||||| ||||||| | ||||||||||| ||||| |  ||||||||||||||  |||||     
T  3768073 cacaagtttagtagtcaagtgtaaaaacttatttttggaaattgtgtattcaatatcttgaaaagttaaaaactcatttttttcaatacaaagtttatgc 3768172  T
Q  111 tttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||||  ||||||||||  |||||||| || |||||| ||||||||| || |||||    
T  3768173 tttaatt-tttttttagattcttaacttgagctcttagggcacaagttaacacgaccc 3768229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 2588786 - 2588843
Alignment:
Q  8 aagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaat 65  Q
    |||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||    
T  2588786 aagacacaagtttataaaccaaatgtagaaacttaattttgaaaattgtgcattcaat 2588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 33558336 - 33558275
Alignment:
Q  81 aaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgc 142  Q
    ||||||| || | |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  33558336 aaacttatttatacaatacaaaatttatgttttaattctttttttagatctttaacttgtgc 33558275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 4206248 - 4206352
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccg-gttttaagtacatgcatg 309  Q
    ||||||||| ||| ||| ||||  |||||||||| |||||||||||||||||||||| ||| || | ||||| | |||||| | ||||||||||| ||||    
T  4206248 ttgatgaggcgtgccctgtttgtcgtaaggcgtgcctggatacttttggggagcatgccgttcactgtaaggag-tttccgagctttaagtacatacatg 4206346  T
Q  310 cctttg 315  Q
     |||||    
T  4206347 actttg 4206352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 45321 - 45381
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    ||||||||||||| ||| ||||  |||||| ||| || |||||||||||||||||||||||    
T  45321 ttgatgaggtgtgccctgtttgtcgtaaggtgtgccttgatacttttggggagcatgtcgt 45381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 11752966 - 11752930
Alignment:
Q  132 ttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||||||||||||||||||||||||| ||||||||    
T  11752966 ttaacttgtgcccttaggacacaagttaacatgaccc 11752930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 34304920 - 34304848
Alignment:
Q  243 tgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagtacatgcatgcctttg 315  Q
    |||||||||||||||||||||||||| || || | ||||| | ||  ||| |||||||||||||||| |||||    
T  34304920 tgtctggatacttttggggagcatgttgttcactgtaaggagcttctcggctttaagtacatgcatgactttg 34304848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 32116144 - 32116085
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcg 270  Q
    ||||||| ||||| ||| ||||  |||||| ||| |||||||||||||||||||||||||    
T  32116144 ttgatgatgtgtgccctgtttgtcgtaaggtgtgcctggatacttttggggagcatgtcg 32116085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 32120384 - 32120329
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcat 266  Q
    ||||| ||||||| ||| ||||  |||||| |||||||||||||||||||||||||    
T  32120384 ttgatcaggtgtgccctatttgtcgtaaggtgtgtctggatacttttggggagcat 32120329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 7509669 - 7509633
Alignment:
Q  132 ttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  7509669 ttaacatgtgcccttagggcacaagttagcatgaccc 7509633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 37861187 - 37861343
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    ||||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||| ||||||  ||| ||| ||| |||||||||||||||||||||||    
T  37861187 cacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattcaatgtcttgaaagtttaaaaagttattttttcaatacaaaacttatgtt 37861286  T
Q  112 ttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    ||||||| ||||||||||| |||||||||||| | ||| ||||||||| ||||||||    
T  37861287 ttaattctttttttagatccttaacttgtgccttaagggcacaagttaacatgaccc 37861343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 16692094 - 16692258
Alignment:
Q  8 aagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaactta 107  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||  ||||||||||||||||||    
T  16692094 aagacataagtttagaagccaaatataaaaatttatttttgaaaattgtgcattcaatatcttgaaaagttaaaaatttatattttcaatacaaaactta 16692193  T
Q  108 tgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccataa 172  Q
    ||||||| |||  |||||||||  |||||||||||||| | | ||||||||| || |||||||||    
T  16692194 tgttttatttctctttttagattcttaacttgtgccctgatggcacaagttaacacgacccataa 16692258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 46963985 - 46963829
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    ||||||||||||||||||||||| ||| ||| ||||| |||| ||||||||||||| ||||||  ||| ||| ||| |||||||||||||||||||||||    
T  46963985 cacaagtttagaaaccaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaagtttaaaaagttattttttcaatacaaaacttatgtt 46963886  T
Q  112 ttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    ||||||| ||||||||||| |||||||||||| | ||| ||||||||| ||||||||    
T  46963885 ttaattctttttttagatccttaacttgtgccttaaggccacaagttaacatgaccc 46963829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 2319166 - 2319272
Alignment:
Q  38 atttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaact 137  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||  |||| ||| | ||||||||| ||||||    
T  2319166 atttatttttgaaaattgtgcattcaatgttttgaaaagttaaaaacttattttttcaatacaaaactcataatttagttcttcttttagatccttaact 2319265  T
Q  138 tgtgccc 144  Q
    |||||||    
T  2319266 tgtgccc 2319272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 19399855 - 19399989
Alignment:
Q  8 aagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaactta 107  Q
    ||||||||||||||| | |||||| || ||| ||||||||| |||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||| |||    
T  19399855 aagacacaagtttagtagccaaatatagaaacttatttttggaaattgtgcattcaatgtcttgaaaatttaaaaacttattttttcaatacaaaattta 19399954  T
Q  108 tgttttaattcgttttttagatctttaacttgtgcc 143  Q
    || |||||||  ||||||||||  ||||||||||||    
T  19399955 tgctttaatt-attttttagattcttaacttgtgcc 19399989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 44540242 - 44540114
Alignment:
Q  13 acaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaactta-gtttttcaatacaaaacttatgtt 111  Q
    |||||||||||| ||||| ||||||||||||||||  ||||||||||||| |||| |||||| |||| |||||||  |||||||||| ||||||||| ||    
T  44540242 acaagtttagaagccaaacgtaaaaatttatttttagaaattgtgcattcgatgtcttgaaatgttaaaaacttatctttttcaatataaaacttatatt 44540143  T
Q  112 ttaattcgttttttagatctttaacttgt 140  Q
    |||||||  |||||||||| |||| ||||    
T  44540142 ttaattctatttttagatcattaaattgt 44540114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 30468802 - 30468668
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaactta-gtttttcaatacaaaacttatgt 110  Q
    |||||||||||||||||||| || ||| ||| ||||| ||||||| |||||||| | ||||||  ||| ||| |||  |||||||||||||||||||| |    
T  30468802 cacaagtttagaaaccaaatatagaaacttaattttggaaattgtacattcaatttgttgaaagtttaaaaagttatttttttcaatacaaaacttatat 30468703  T
Q  111 tttaattc-gttttttagatctttaacttgtgccc 144  Q
    ||||||||  ||||||||||| ||||| |||||||    
T  30468702 tttaattcttttttttagatccttaacctgtgccc 30468668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 38502163 - 38502237
Alignment:
Q  97 tacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccata 171  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| ||||    
T  38502163 tacaacacttatgttttaattctttttttagatcattaacttgtgccctaaggacataagttagcatgactcata 38502237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 46362863 - 46362766
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatg 109  Q
    |||||||||| ||| ||| |||| ||| ||| ||||| |||||||||||||||||| ||||||  ||  ||| ||| |||||||||||||||||||||    
T  46362863 cacaagtttataaaacaactgtagaaacttaattttggaaattgtgcattcaatgtcttgaaagttttaaaagttattttttcaatacaaaacttatg 46362766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 45891830 - 45891938
Alignment:
Q  52 attgtgcattcaatgttttgaaaagttacaaacttagtttttcaat-acaaaacttatgttttaattcgttttttagatctttaacttgtgcccttagga 150  Q
    ||||||||||||||||  | |||| ||| || |||| ||||||||  |||||| ||||| ||||||||  |||||||||  ||||||||||||||||||     
T  45891830 attgtgcattcaatgtcctaaaaatttaaaatcttattttttcaaagacaaaaattatgatttaattctatttttagattcttaacttgtgcccttaggg 45891929  T
Q  151 cacaagtta 159  Q
    |||||||||    
T  45891930 cacaagtta 45891938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 27382042 - 27381959
Alignment:
Q  90 ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccataat 173  Q
    ||||||||| |||| |||  |||||||||  ||||||| |  |||||||||||||||||||||||||||| |||||||| ||||    
T  27382042 ttttcaatataaaagttactttttaattccatttttagtttcttaacttgtgcccttaggacacaagttaacatgacccttaat 27381959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 30666856 - 30667013
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaac-ttagtttttcaatacaaaacttatgt 110  Q
    |||||||| |||||||||||||| ||  || |||||| || ||||||||||||||| || ||||||| ||||  |||   || ||||| |||| |||| |    
T  30666856 cacaagttaagaaaccaaatgtagaaggttttttttggaacttgtgcattcaatgtctt-aaaagttgcaaaagttatacttccaatataaaatttattt 30666954  T
Q  111 tttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccca 169  Q
    || | |||  |||| || || |||||||||||||||||| ||||||||| |||||||||    
T  30666955 ttaatttctattttaagctccttaacttgtgcccttagggcacaagttaacatgaccca 30667013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 30617693 - 30617538
Alignment:
Q  15 aagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaac-ttagtttttcaatacaaaacttatgtttt 113  Q
    ||||| ||||||||||| || || ||| || ||| |||||||||||||||| | || ||||||| ||||  |||   |||||||| |||| |||  || |    
T  30617693 aagttaagaaaccaaatatagaagttttttcttggaaattgtgcattcaatctctt-aaaagtttcaaaagttatcctttcaatataaaatttactttct 30617595  T
Q  114 aattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccat 170  Q
    |||||  |||| || || |||||||||||||| ||| ||||||||||||||||||||    
T  30617594 aattctattttaagctccttaacttgtgccctaagggcacaagttagcatgacccat 30617538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 53170953 - 53170893
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    ||||||||||||| ||| ||||  |||||||||| ||| ||||||||||||||||||||||    
T  53170953 ttgatgaggtgtgccctgtttgtcgtaaggcgtgcctgaatacttttggggagcatgtcgt 53170893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 3330381 - 3330301
Alignment:
Q  235 gtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagtacatgcatgcctttg 315  Q
    |||||||||||||| |||||||||||||||||| | | || | ||||| | || |||| |||||||||| ||||| |||||    
T  3330381 gtaaggcgtgtctgtatacttttggggagcatgccattcattgtaaggagcttcccggctttaagtacaggcatgactttg 3330301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 51164655 - 51164523
Alignment:
Q  15 aagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttac-aaacttagtttttcaatacaaaacttatgtttt 113  Q
    ||||| |||||| ||||||  |||||| || ||||||| |||||||||||||| || ||||||| | ||| ||| |||||||||| |||| ||||   ||    
T  51164655 aagttaagaaactaaatgtggaaattttttcttgaaaagtgtgcattcaatgtctt-aaaagtttcaaaagttattttttcaatataaaatttattactt 51164557  T
Q  114 aattcgttttttagatctttaacttgtgccctta 147  Q
    |||||  |||| || || |||||||||| |||||    
T  51164556 aattctattttaagttccttaacttgtgtcctta 51164523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 3528014 - 3528050
Alignment:
Q  132 ttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  3528014 ttaacatgttcccttaggacacaagttagcatgaccc 3528050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 10401579 - 10401535
Alignment:
Q  21 agaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaat 65  Q
    |||||||||||||||||| || || |||||| |||||||||||||    
T  10401579 agaaaccaaatgtaaaaagtttttattgaaatttgtgcattcaat 10401535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 16957991 - 16957931
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    ||||||||||||| | | ||||  |||||||||| || |||||||||||||||||| ||||    
T  16957991 ttgatgaggtgtgccttgtttgtcgtaaggcgtgcctagatacttttggggagcatatcgt 16957931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 16831718 - 16831564
Alignment:
Q  15 aagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtttta 114  Q
    |||| ||||| | ||||||||||||||||||||  |||||||||||||||| | ||||||||||| |||||||  |||||||||||||||||||||||||    
T  16831718 aagtatagaagctaaatgtaaaaatttatttttagaaattgtgcattcaatatcttgaaaagttaaaaacttatattttcaatacaaaacttatgtttta 16831619  T
Q  115 attcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccca 169  Q
     |||  |||||| ||| |||||||||||||| ||||||||||||| |||||||||    
T  16831618 tttctatttttacatccttaacttgtgccctaaggacacaagttaacatgaccca 16831564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 47375924 - 47375800
Alignment:
Q  7 gaagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaactt 106  Q
    |||| ||||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||| ||||||  ||| ||| ||| ||||||||||||||||||    
T  47375924 gaaggcacaagtttagaatccaaatgtagaaacttatttttggaaattgtgcattcaatgtcttgaaagattaaaaagtta-tttttcaatacaaaactt 47375826  T
Q  107 atgttttaattcgttttttagatctt 132  Q
    |||||||||||| |||||||||||||    
T  47375825 atgttttaattctttttttagatctt 47375800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 30003785 - 30003898
Alignment:
Q  30 atgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttttttagat 129  Q
    ||||| ||||||||||||| ||||| || ||||||| | || |||||||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  30003785 atgtagaaatttatttttggaaattatgtattcaatatcttaaaaagttaaaaacttattttttcaatacaaaatttatgttttaattctttttttagat 30003884  T
Q  130 ctttaacttgtgcc 143  Q
     |||||||||||||    
T  30003885 ttttaacttgtgcc 30003898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 21212777 - 21212671
Alignment:
Q  27 caaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgtttttta 126  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||| | ||| |||||||||  |||||||    
T  21212777 caaatgtaaaaacttatttttgaaaattatacattcaatgttttgaaaagttaaaaacttattttttcaatacaatatttacgttttaatt--tttttta 21212680  T
Q  127 gatctttaa 135  Q
    |||| ||||    
T  21212679 gatccttaa 21212671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 12879808 - 12879649
Alignment:
Q  8 aagacacaagtttagaaaccaaatgta-aaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaactt 106  Q
    ||||||||||||| |||   ||||||| |||||||| | ||| |||||||||||| ||||| ||||||  |||  || ||| ||||| ||||||||||||    
T  12879808 aagacacaagtttggaagttaaatgtagaaaatttaatcttggaaattgtgcatttaatgtcttgaaagtttaacaatttatttttttaatacaaaactt 12879709  T
Q  107 atgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgac 166  Q
    |||||||||||| ||| ||||||| ||||||| |||| || || ||||||||||||||||    
T  12879708 atgttttaattcttttgttagatccttaacttatgccatttgggcacaagttagcatgac 12879649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 39511188 - 39511307
Alignment:
Q  16 agtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaa 115  Q
    ||||||||| ||| ||||||||| ||||||||  |||||||||||||||||| ||||||||||  ||| |||  |||| ||||||||||||||||||||     
T  39511188 agtttagaagccagatgtaaaaacttatttttagaaattgtgcattcaatgtcttgaaaagttgaaaatttatatttttaatacaaaacttatgttttat 39511287  T
Q  116 ttcgttttttagatctttaa 135  Q
    |||  |||||| || |||||    
T  39511288 ttctctttttaaatatttaa 39511307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 42244460 - 42244391
Alignment:
Q  100 aaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccca 169  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||  ||||||||    
T  42244460 aaaacttatgttttaattctttttttagattcttaacttgtgcccttaggacacaagttaatatgaccca 42244391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 5827709 - 5827653
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatg 267  Q
    ||||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||    
T  5827709 ttgatgaggtgtgccctgtttgtcgtaaggcgtgtctggatacttttggggagcatg 5827653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 20011227 - 20011385
Alignment:
Q  10 gacacaagtttagaaaccaaatgtaaaaa-tttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttat 108  Q
    |||||||||||| || | |||  |||||| ||| |||||||||||||||||||||| || || |||||||  ||| |   ||||| ||||||||| |||     
T  20011227 gacacaagtttaaaagctaaacttaaaaactttttttttgaaaattgtgcattcaacgtatt-aaaagttttaaattgtcttttt-aatacaaaagttac 20011324  T
Q  109 gttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccca 169  Q
     |||||||||  ||||||| |  |||||||||||||||||| ||||||||| |||||||||    
T  20011325 tttttaattcaatttttagtttcttaacttgtgcccttagggcacaagttaacatgaccca 20011385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 38850519 - 38850673
Alignment:
Q  18 tttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt-----t 112  Q
    |||||||  |||||||| ||||||  | || ||||||||||||||||||||||||||  ||| ||||||| ||||| |||| |||| |||||||     |    
T  38850519 tttagaagtcaaatgtagaaattttatgttaaaaattgtgcattcaatgttttgaaagtttaaaaactta-ttttttaatataaaaattatgtttaatct 38850617  T
Q  113 taattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||  ||||||||||  |||| |||| |||||||| ||||||||| || |||||    
T  38850618 taatttcttttttagattcttaatttgtacccttagggcacaagttaacaggaccc 38850673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 32585599 - 32585542
Alignment:
Q  214 atgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    |||||||||| ||| ||||  ||||||| |||||||||||||||||||||||||||||    
T  32585599 atgaggtgtgccctatttgtcgtaaggcatgtctggatacttttggggagcatgtcgt 32585542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 4501713 - 4501653
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    ||||||||||||||| | ||||  |||||||||| ||||||||||||||||| ||||||||    
T  4501713 ttgatgaggtgtgtcatgtttgtcgtaaggcgtgcctggatacttttggggaccatgtcgt 4501653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 19277723 - 19277687
Alignment:
Q  235 gtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    |||||||||||||||||||||||||||||||||||||    
T  19277723 gtaaggcgtgtctggatacttttggggagcatgtcgt 19277687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 45613494 - 45613550
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatg 267  Q
    ||||||||||||||||| |||  |||||| ||||| |||||||||||||||||||||    
T  45613494 ttgatgaggtgtgtcctgtttattgtaagacgtgtatggatacttttggggagcatg 45613550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 18700028 - 18700106
Alignment:
Q  90 ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||||||||||| |||  |||||||||  ||||||| |  ||||||||||||| |||| ||||||||| ||||||||    
T  18700028 ttttcaatacaaaagttactttttaattccatttttagtttcttaacttgtgcccctagggcacaagttaacatgaccc 18700106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 10905558 - 10905501
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgt 268  Q
    ||||||||||||| ||| ||||  ||||||| || |||||||||||||||||||||||    
T  10905558 ttgatgaggtgtgccctatttgtcgtaaggcttgcctggatacttttggggagcatgt 10905501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 27390228 - 27390150
Alignment:
Q  90 ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||||||||||| |||| | ||| ||  |||||||| | ||||||||||||||| ||  ||||||||| ||||||||    
T  27390228 ttttcaatacaaaatttatttattattttcttttttagttgtttaacttgtgccctaagagcacaagttaacatgaccc 27390150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 32786924 - 32786962
Alignment:
Q  132 ttaacttgtgcccttaggacacaagttagcatgacccat 170  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  32786924 ttaacatgtgcccttagggcacaagttagcatgacccat 32786962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 33645200 - 33645162
Alignment:
Q  131 tttaacttgtgcccttaggacacaagttagcatgaccca 169  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  33645200 tttaacatgtgcccttaggtcacaagttagcatgaccca 33645162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 32948311 - 32948384
Alignment:
Q  72 aaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgccct 145  Q
    |||| ||||||| ||| ||||||||| ||| | |||| |||||||||   ||||||||||||| ||||||||||    
T  32948311 aaaacttacaaaattattttttcaatgcaatatttattttttaattccacttttagatctttatcttgtgccct 32948384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 41894724 - 41894652
Alignment:
Q  96 atacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||||| ||||  |||| ||| |||| ||| || |||||||||||||| ||||||||||||| || |||||    
T  41894724 atacaaaatttattgtttatttccttttatagttccttaacttgtgccctaaggacacaagttaacaagaccc 41894652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 5577991 - 5578144
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    ||||||||||||||||||||||  ||||||| ||||| |||||||||||| ||| | ||||||  ||| ||||||| ||||||||||||||| |||||||    
T  5577991 cacaagtttagaaaccaaatgtcgaaatttaattttggaaattgtgcatttaatatcttgaaagtttaaaaacttattttttcaatacaaaatttatgtt 5578090  T
Q  112 ttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatga 165  Q
    |||||||  |||||||||| |||||||||||||||| ||||||||||| |||||    
T  5578091 ttaattctctttttagatccttaacttgtgcccttatgacacaagttaacatga 5578144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 20556766 - 20556897
Alignment:
Q  8 aagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaactta 107  Q
    ||||||||||||||||||| ||||||| ||| ||| ||||| |||| ||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||    
T  20556766 aagacacaagtttagaaactaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaaattta-aaacttattttttcaatacaaaactta 20556864  T
Q  108 tgttttaattcgttttttagatctttaacttgt 140  Q
    ||||||||||| | ||||||||  |||||||||    
T  20556865 tgttttaattcttcttttagattcttaacttgt 20556897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 35977314 - 35977470
Alignment:
Q  13 acaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttt 112  Q
    ||||||||| ||| | |||||||||| ||| ||||  ||||| |||||||||||| ||||||| ||| ||| ||| |||||||||| ||||||||| |||    
T  35977314 acaagtttaaaaatcgaatgtaaaaacttaattttagaaattatgcattcaatgtcttgaaaatttaaaaagttattttttcaatataaaacttatattt 35977413  T
Q  113 taattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccca 169  Q
    |||||| ||||||||||| |||||||||||| | | ||||||||||| ||| |||||    
T  35977414 taattctttttttagatccttaacttgtgccttaaagacacaagttaacataaccca 35977470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 34074146 - 34074279
Alignment:
Q  11 acacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgt 110  Q
    ||||||||||||||   ||||||| ||||||  ||||| |||| ||||||||||||||||||||  ||| || |||| ||||||||||||||||||||||    
T  34074146 acacaagtttagaagttaaatgtagaaatttcattttggaaatcgtgcattcaatgttttgaaagtttaaaagcttattttttcaatacaaaacttatgt 34074245  T
Q  111 tttaatt-cgttttttagatctttaacttgtgcc 143  Q
    ||||||| | ||||||||||  ||||||||||||    
T  34074246 tttaattcctttttttagattcttaacttgtgcc 34074279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 26009713 - 26009595
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttt-tgaaaagttacaaacttagtttttcaatacaaaacttatgt 110  Q
    ||||||||||||| | ||||||| |||| || ||||| |||| ||||||||||||| | |||||  ||| ||||||| |||| |||||||||||||||||    
T  26009713 cacaagtttagaagctaaatgtagaaatataattttggaaatcgtgcattcaatgtctctgaaagtttaaaaacttatttttccaatacaaaacttatgt 26009614  T
Q  111 tttaattcgttttttagat 129  Q
    |||||||| ||||||||||    
T  26009613 tttaattctttttttagat 26009595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 20142393 - 20142452
Alignment:
Q  212 tgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    |||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||    
T  20142393 tgatgaggtgtgccctgtttgtcgtaaggcgtgtctggatacttttggggagcatgtcgt 20142452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 4412718 - 4412807
Alignment:
Q  211 ttgatgaggtgtgtcctttttgat-gtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagt 300  Q
    ||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||| || | ||||| | ||||||| |||||||    
T  4412718 ttgatgaggtgtg-ccttgttggtcgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagctttccggctttaagt 4412807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 17345093 - 17345033
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    ||||||||||||| ||| ||||  |||||||||| ||||||||||||||||||||||||||    
T  17345093 ttgatgaggtgtgccctgtttgtcgtaaggcgtgcctggatacttttggggagcatgtcgt 17345033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 28225455 - 28225351
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagtacatgcatgc 310  Q
    ||||||||||||| | | ||||  ||||| ||||||| ||||||||||||||||||| ||| || | ||||| | ||||||| |||||||||| |||||     
T  28225455 ttgatgaggtgtgccatgtttgtcgtaagacgtgtctagatacttttggggagcatgccgttcattgtaaggagttttccggctttaagtacaggcatga 28225356  T
Q  311 ctttg 315  Q
    |||||    
T  28225355 ctttg 28225351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 3095830 - 3095779
Alignment:
Q  89 tttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgt 140  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  3095830 tttttcaatacaaaatttatattttaattctttttttagatctttaacttgt 3095779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 37980410 - 37980485
Alignment:
Q  90 ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatga 165  Q
    |||||||||||||| |||  |||||||||  ||||||| |  |||||||||||||||||||||||||||| |||||    
T  37980410 ttttcaatacaaaagttactttttaattccatttttagtttcttaacttgtgcccttaggacacaagttaacatga 37980485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 44686872 - 44686776
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagtacatgcat 308  Q
    ||||||||||||||||| ||||  |||||  |||||||||||||||| ||||||||||| | || | ||||| | || |||| |||||||||||||||    
T  44686872 ttgatgaggtgtgtcctgtttgtcgtaagatgtgtctggatactttt-gggagcatgtcattcattgtaaggagcttcccggctttaagtacatgcat 44686776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 9685067 - 9685159
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagtaca 303  Q
    ||||||||| ||| ||| ||||  ||||||||||||||||||||||||||||||  ||||| || | ||||| | || |||| ||||||||||    
T  9685067 ttgatgaggcgtgccctgtttgtcgtaaggcgtgtctggatacttttggggagcgcgtcgttcattgtaaggagcttcccggctttaagtaca 9685159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 21620713 - 21620625
Alignment:
Q  90 ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccataatgtaat 178  Q
    |||||| || ||||||||| ||||| |||  |||| || || |||||||||||||||||| |||||||||  |||||||||| ||||||    
T  21620713 ttttcattataaaacttattttttatttccattttaagttccttaacttgtgcccttagggcacaagttaagatgacccatattgtaat 21620625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 28631755 - 28631687
Alignment:
Q  91 tttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagtta 159  Q
    ||||||||||||| | || | ||| ||| |||||||| || |||||||||||||||||| |||||||||    
T  28631755 tttcaatacaaaattgatttattatttctttttttagctccttaacttgtgcccttagggcacaagtta 28631687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 41867560 - 41867616
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatg 267  Q
    |||||||||||||  || ||||  ||||| |||||||||||||||||||||||||||    
T  41867560 ttgatgaggtgtgctctgtttgtcgtaagtcgtgtctggatacttttggggagcatg 41867616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 9707131 - 9707198
Alignment:
Q  81 aaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttag 148  Q
    |||||||  |||||||| ||| | |||| |||||||||  |||||||||||||| |||||||||||||    
T  9707131 aaacttatcttttcaatgcaacatttattttttaattctatttttagatctttatcttgtgcccttag 9707198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 33612193 - 33612248
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcat 266  Q
    ||||||||||||||| | ||||  |||| | |||||||||||||||||||||||||    
T  33612193 ttgatgaggtgtgtcatgtttgtcgtaaagtgtgtctggatacttttggggagcat 33612248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 43592740 - 43592822
Alignment:
Q  81 aaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcat 163  Q
    |||||||  |||||||||||| | ||||  ||| ||||  |||| ||||||||| |||||||||| ||| |||||||||||||    
T  43592740 aaacttatcttttcaatacaatatttattgtttcattctattttaagatctttatcttgtgccctaagggcacaagttagcat 43592822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 4570851 - 4570744
Alignment:
Q  28 aaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttttttag 127  Q
    |||| |||||| ||| |||| |||||||| |||||||||| || |||  ||  |||||||  |||| |||  |||  |||||||||||||| ||||||||    
T  4570851 aaatataaaaaattaattttaaaaattgtacattcaatgtcttaaaagatttaaaacttatatttttaatttaaatattatgttttaattc-ttttttag 4570753  T
Q  128 atctttaac 136  Q
    |||||||||    
T  4570752 atctttaac 4570744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 9950400 - 9950436
Alignment:
Q  129 tctttaacttgtgcccttaggacacaagttagcatga 165  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  9950400 tctttaacatgtgcccttagaacacaagttagcatga 9950436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 13748197 - 13748233
Alignment:
Q  132 ttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    ||||||||||||||||||  |||||||||||||||||    
T  13748197 ttaacttgtgcccttagggaacaagttagcatgaccc 13748233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 19161501 - 19161537
Alignment:
Q  235 gtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    |||||||| | ||||||||||||||||||||||||||    
T  19161501 gtaaggcgcgcctggatacttttggggagcatgtcgt 19161537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 22348800 - 22348687
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaata-caaaacttatgt 110  Q
    |||||||  |||||| |||| ||||||| | || |||||||||||||||||||| |||| |||  ||| ||| |||  ||||||| | |||||||| | |    
T  22348800 cacaagtaaagaaactaaatataaaaatattttcttgaaaattgtgcattcaatattttaaaagtttaaaaaatta--ttttcaacatcaaaacttgtct 22348703  T
Q  111 tttaattcgtttttta 126  Q
    |||||||| |||||||    
T  22348702 tttaattcctttttta 22348687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 7637600 - 7637756
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    |||||||||||||  |||||||| || |||  |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  7637600 cacaagtttagaagtcaaatgtagaatttttcttttgaaaattgtgcattcaatgtcttgaaaagttacaaacttattttttcaatacaaaacttgtgtt 7637699  T
Q  112 ttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccca 169  Q
     |||||  ||||||| |||||| ||||||||  ||||| ||||| |||||||||||||    
T  7637700 ctaatttttttttta-atctttgacttgtgcttttagggcacaaattagcatgaccca 7637756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 18181809 - 18181666
Alignment:
Q  26 ccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgtttttt 125  Q
    ||||||||| ||| || ||||||||||||||||||||||||| || |||| ||| ||||||| ||||| |||| |||| ||||| |||||||  ||||||    
T  18181809 ccaaatgtagaaacttgtttttgaaaattgtgcattcaatgtcttaaaaaattaaaaacttattttttaaatataaaatttatgctttaatt-ttttttt 18181711  T
Q  126 agatctttaacttgtgcccttaggacacaagttagcatgacccat 170  Q
    ||||  ||||||||||||||||||||||||||||  |||||||||    
T  18181710 agattcttaacttgtgcccttaggacacaagttaatatgacccat 18181666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 7042597 - 7042730
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    ||||||||||||||  || |||| ||| ||||||||| |||  ||||||| ||||||||||||| ||| ||||||| ||||||||||||||||| ||| |    
T  7042597 cacaagtttagaaattaattgtagaaacttatttttggaaaacgtgcattaaatgttttgaaaaattaaaaacttattttttcaatacaaaactcatgat 7042696  T
Q  112 ttaattcgttttttagatctttaacttgtgccct 145  Q
    ||||||| | ||||| ||| ||||||||||||||    
T  7042697 ttaattcttcttttaaatccttaacttgtgccct 7042730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 114224 - 114088
Alignment:
Q  33 taaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctt 132  Q
    |||||| ||| ||||| || | || |||||||||||||||||  ||| ||| ||| |||||||||||||||||||||||||||||| | ||||||||  |    
T  114224 taaaaacttaattttggaagtcgtacattcaatgttttgaaagtttaaaaatttattttttcaatacaaaacttatgttttaattcttcttttagattct 114125  T
Q  133 taacttgtgcccttaggacacaagttagcatgaccca 169  Q
    |||||| ||||||||||  | ||||||||||||||||    
T  114124 taacttttgcccttagggtataagttagcatgaccca 114088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 39699442 - 39699556
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaa-gttacaaacttagtttttcaatacaaaacttatgt 110  Q
    ||||| |||||||  ||||||||  |||||||||||||||||||| |||| ||||| ||||||| |||||||||||| ||||||||| ||||||||| |     
T  39699442 cacaaatttagaagtcaaatgtagtaatttatttttgaaaattgtacatttaatgtcttgaaaacgttacaaacttattttttcaattcaaaacttaagg 39699541  T
Q  111 tttaattcgtttttt 125  Q
    |||||||| ||||||    
T  39699542 tttaattcttttttt 39699556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 43108760 - 43108600
Alignment:
Q  8 aagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaactta 107  Q
    |||| |||||||||||| || ||| |||||| ||| |||||||||||||||||| ||| | ||||||  ||| ||||||| ||||||||||||||| |||    
T  43108760 aagatacaagtttagaagccgaatataaaaacttaattttgaaaattgtgcatttaatatcttgaaagtttaaaaactta-tttttcaatacaaaattta 43108662  T
Q  108 tgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccat 170  Q
    | ||||||||  ||| ||  ||| ||||||||| |||||| ||||||||||| ||| ||||||    
T  43108661 tattttaatt-atttattttatcattaacttgtacccttaagacacaagttaacataacccat 43108600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 43352018 - 43351941
Alignment:
Q  91 tttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    ||||||||||||| |||| | ||| ||| |||||||| |  |||||||||||||||||| ||||||||||||||||||    
T  43352018 tttcaatacaaaatttatttattatttccttttttagtttcttaacttgtgcccttagggcacaagttagcatgaccc 43351941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 24125483 - 24125427
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatg 267  Q
    ||||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||    
T  24125483 ttgatgaggtgtgccctgtttgtcgtaaggcgtgtctggatacttttggggagcatg 24125427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 39435122 - 39435066
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatg 267  Q
    ||||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||    
T  39435122 ttgatgaggtgtgccctgtttgtcgtaaggcgtgtctggatacttttggggagcatg 39435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 9399623 - 9399702
Alignment:
Q  94 caatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccataat 173  Q
    ||||| |||| |||| | ||| ||| |||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||    
T  9399623 caatataaaatttatttattatttccttttttagctctttaacttgtgccctaagggcacaagttaacatgacccataat 9399702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 44814022 - 44813944
Alignment:
Q  89 tttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||||||||||    | ||| ||||||||||||||||||    
T  44814022 ttttttaatacaaaacttatcttttaattc-ttttttagatctttaacttgttttgtaagggcacaagttagcatgaccc 44813944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 500682 - 500584
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagtacatgcatg 309  Q
    ||||||||||||| ||| |||| |||||||| || || ||||||||||||||||||||||| || | ||||| |  | |||  ||||||||||||||||    
T  500682 ttgatgaggtgtgacctgtttgttgtaaggcatgcctagatacttttggggagcatgtcgttcattgtaaggagcatcccgactttaagtacatgcatg 500584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 374374 - 374337
Alignment:
Q  131 tttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  374374 tttaacatgtgccctaaggacacaagttagcatgaccc 374337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 34462742 - 34462879
Alignment:
Q  8 aagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaactta 107  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| |||||| |||  |||||||  |||||||||||||| |||    
T  34462742 aagacacaagtttagaagtcaaatgtagaaatttatttttgaaaattgtgcattcaatgtcttgaaaggttgaaaacttatattttcaatacaaaagtta 34462841  T
Q  108 tgttttaattcgttttttagatctttaacttgtgccct 145  Q
    ||||||||||| ||||||| | | ||||||||||||||    
T  34462842 tgttttaattctttttttaaaaccttaacttgtgccct 34462879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 18919282 - 18919388
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    |||||||||| || ||||||||| ||| |||||||||||||||||||||||||||| |||||| |||| ||| |||  |||||||||||||| || ||||    
T  18919282 cacaagtttataagccaaatgtagaaacttatttttgaaaattgtgcattcaatgtcttgaaaggttaaaaatttatattttcaatacaaaagttttgtt 18919381  T
Q  112 ttaattc 118  Q
    |||||||    
T  18919382 ttaattc 18919388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 1640308 - 1640152
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    |||||||||||||   ||||||| ||| ||| |||| ||||||||||||||||||| ||||||  ||| ||||||| ||||||||||||||  || | ||    
T  1640308 cacaagtttagaagttaaatgtagaaacttaattttaaaaattgtgcattcaatgtcttgaaagtttaaaaacttattttttcaatacaaa--ttttatt 1640211  T
Q  112 ttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccata 171  Q
    ||||||  ||||||| ||| ||||||| || ||||| | ||||||||| |||||||||||    
T  1640210 ttaatttcttttttacatccttaacttttg-ccttaaggcacaagttaccatgacccata 1640152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 40619624 - 40619520
Alignment:
Q  26 ccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgtttttt 125  Q
    ||||||||||||| ||| |||||||||||||||||||||| | || |||  ||| ||| ||| ||||| ||||||||| |||||||||||||| ||||||    
T  40619624 ccaaatgtaaaaacttaattttgaaaattgtgcattcaatatcttaaaagtttaaaaatttatttttttaatacaaaaattatgttttaattcctttttt 40619525  T
Q  126 agatc 130  Q
    |||||    
T  40619524 agatc 40619520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 37705333 - 37705473
Alignment:
Q  8 aagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaactta 107  Q
    |||||||||||||||||  |||||||| ||| | | |||| |||||  |||||||||||||||||||  ||| || |||| |||| |||||||||| |||    
T  37705333 aagacacaagtttagaagtcaaatgtagaaactaaattttaaaaataatgcattcaatgttttgaaagattaaaatcttatttttccaatacaaaattta 37705432  T
Q  108 tgttttaattcgttttttagatctttaacttgtgcccttag 148  Q
    | | || |||| ||||| | ||| |||||||||||||||||    
T  37705433 tatgtttattcttttttaaaatcattaacttgtgcccttag 37705473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 45948952 - 45948871
Alignment:
Q  90 ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccata 171  Q
    |||||||||||||| |||  |||||||||  ||||||| |  ||||||||||||||||||| |||||||| |||||||||||    
T  45948952 ttttcaatacaaaatttactttttaattccatttttagtttcttaacttgtgcccttaggaaacaagttaacatgacccata 45948871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 24439242 - 24439145
Alignment:
Q  21 agaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattc 118  Q
    |||||| ||||||||||||||| ||||||||||||||||||||   | || |||  ||| ||||||| ||||| ||||||| | |||| |||||||||    
T  24439242 agaaactaaatgtaaaaatttaattttgaaaattgtgcattcataatcttaaaagtttaaaaacttatttttttaatacaatatttattttttaattc 24439145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 2144576 - 2144661
Alignment:
Q  43 tttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt--ttaattcgtttttta 126  Q
    ||||||||||||||||||||||||||||||||| ||| | | ||| |||||  |||||||| |||| ||  ||||||| |||||||    
T  2144576 tttttgaaaattgtgcattcaatgttttgaaaatttagatatttatttttttgatacaaaatttatatttcttaattcatttttta 2144661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 30512636 - 30512558
Alignment:
Q  90 ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||||||||| | |||| ||||| ||| ||||||| ||  ||||||||||  ||||||||| |||||||||||||||    
T  30512636 ttttcaatacaatatttattttttatttccttttttaaattcttaacttgtgtacttaggacataagttagcatgaccc 30512558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 34967721 - 34967803
Alignment:
Q  90 ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgacccataa 172  Q
    |||||||| ||||| |||| |||||||||  ||||||| |  |||||||||||||  ||| ||||||||| ||||||||||||    
T  34967721 ttttcaatgcaaaagttatcttttaattctatttttagtttcttaacttgtgccccaagggcacaagttaacatgacccataa 34967803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 8301818 - 8301697
Alignment:
Q  8 aagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaactta 107  Q
    |||||||||||| | ||| |||||||| ||| ||| |||| |||||||||||||||||  |   ||| |||| ||| |||  ||||||||| |||  |||    
T  8301818 aagacacaagttaaaaaatcaaatgtagaaacttaattttaaaaattgtgcattcaataatcgtaaaggttaaaaagttatattttcaatagaaagttta 8301719  T
Q  108 tgttttaattcgttttttagat 129  Q
    ||||||| ||| ||||||||||    
T  8301718 tgttttacttctttttttagat 8301697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 51540791 - 51540836
Alignment:
Q  99 caaaacttatgttttaattcgttttttagatctttaacttgtgccc 144  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||    
T  51540791 caaaacttatgttttaattccatttttagatcattaacttgtgccc 51540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 47853591 - 47853508
Alignment:
Q  50 aaattgtgcattcaatgttttgaaaagttacaaacttagttttt-caataca--aaacttatgttttaattcgttttttagatc 130  Q
    |||||||||||  ||||||||||||  ||| ||| ||| ||||| |||||||  |||||||||||||||||| |||||||||||    
T  47853591 aaattgtgcatataatgttttgaaagtttaaaaatttatttttttcaatacacaaaacttatgttttaattccttttttagatc 47853508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 28924161 - 28924126
Alignment:
Q  28 aaatgtaaaaatttatttttgaaaattgtgcattca 63  Q
    ||||||||||||||| ||||||||||||||||||||    
T  28924161 aaatgtaaaaatttaattttgaaaattgtgcattca 28924126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 34644996 - 34644961
Alignment:
Q  236 taaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  34644996 taaggcgtgtctggatacttttggcgagcatgtcgt 34644961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 22347332 - 22347242
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagta 301  Q
    ||||||||||||| ||| ||||  ||||||| || ||||||||||  |||||||||||||| || | ||||| | || |||| ||||||||    
T  22347332 ttgatgaggtgtgccctgtttgtcgtaaggcatgcctggatacttaaggggagcatgtcgttcattgtaaggagcttaccggctttaagta 22347242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 1607354 - 1607398
Alignment:
Q  21 agaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaat 65  Q
    |||||| ||||||| |||||||  |||||||||||||||||||||    
T  1607354 agaaactaaatgtagaaatttaactttgaaaattgtgcattcaat 1607398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 1780548 - 1780508
Alignment:
Q  128 atctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    ||||||||| |||||||||||| |||||||||||| |||||    
T  1780548 atctttaacatgtgcccttagggcacaagttagcaagaccc 1780508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 16394959 - 16394995
Alignment:
Q  132 ttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||||||||||||| |||| |||||||||||||||    
T  16394959 ttaacttgtgcccttatgacataagttagcatgaccc 16394995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 26758486 - 26758538
Alignment:
Q  15 aagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgt 67  Q
    ||||| |||| |||||| || |||| | |||||||||||||||||||||||||    
T  26758486 aagttaagaagccaaatatataaatgtttttttgaaaattgtgcattcaatgt 26758538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 30058471 - 30058527
Alignment:
Q  112 ttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |||||||  |||| || |||||||||||||||||||||  |||||||| ||||||||    
T  30058471 ttaattctattttaagttctttaacttgtgcccttagggtacaagttaacatgaccc 30058527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 523652 - 523783
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| ||| |||  |||||||||||||| |||||||    
T  523652 cacaagtttagaagccaaatataaaaatttatttttgaaaattgtgcatttaatgtcttgaaaggttaaaaatttatattttcaatacaaaagttatgtt 523751  T
Q  112 ttaattcgttttttagatctttaacttgtgcc 143  Q
    ||||||| ||||||||| | ||||||||||||    
T  523752 ttaattctttttttagaaccttaacttgtgcc 523783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 5736120 - 5735968
Alignment:
Q  8 aagacacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaactta-gtttttcaatacaaaactt 106  Q
    |||| |||||||||| | ||||||||| ||| ||||||||| |||||||||||||||||| || |||||||| |||||||  |||||||||| ||||  |    
T  5736120 aagatacaagtttagtagccaaatgtagaaacttatttttggaaattgtgcattcaatgtcttcaaaagttaaaaacttatttttttcaataaaaaatct 5736021  T
Q  107 atgttttaattcgttttttagatctttaacttgtgcccttaggacacaagtta 159  Q
    |||||||||||| ||||||||||  |||||||||| ||||||| |||||||||    
T  5736020 atgttttaattctttttttagattcttaacttgtggccttagggcacaagtta 5735968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 30240 - 30367
Alignment:
Q  15 aagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtttta 114  Q
    ||||| |||| ||||||||| ||||| | ||||||||||||| |||||||||| |||||| |||| | ||||  |||||||||||||||||||| |||||    
T  30240 aagttaagaagccaaatgtagaaattgaattttgaaaattgtccattcaatgtcttgaaaggttaaacactttatttttcaatacaaaacttatatttta 30339  T
Q  115 attcgttttttagatctttaacttgtgc 142  Q
    |||| |||||| ||| ||||||||||||    
T  30340 attctttttttggatttttaacttgtgc 30367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 15472837 - 15472942
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    |||||||||||||   ||||||| ||| ||||||||| |||||||||||||||| | || |||| ||| ||||||| |||||||||||||||||||| ||    
T  15472837 cacaagtttagaagttaaatgtagaaacttatttttggaaattgtgcattcaatatctttaaaaattaaaaacttattttttcaatacaaaacttatatt 15472936  T
Q  112 ttaatt 117  Q
    ||||||    
T  15472937 ttaatt 15472942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 6825506 - 6825441
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagt 77  Q
    |||||||||| || ||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  6825506 cacaagtttaaaagccaaacgtaaaaacttatttttgaaaattgtgcattcaatgtcttgaaaagt 6825441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 19521462 - 19521586
Alignment:
Q  43 tttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagt-ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtg 141  Q
    ||||||||||||||||||||||||| || |||||||  ||| || || |||||||||||||| |||| |||||||||  ||||||  | |||||||| ||    
T  19521462 tttttgaaaattgtgcattcaatgtatt-aaaagtttaaaattttgtcttttcaatacaaaagttattttttaattccatttttaattttttaacttctg 19521560  T
Q  142 cccttaggacacaagttagcatgacc 167  Q
    || ||||| ||||||||| |||||||    
T  19521561 cctttaggtcacaagttaacatgacc 19521586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 433747 - 433687
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    |||||||||||||  || ||||  |||||||||||||||||||||||||||||||||||||    
T  433747 ttgatgaggtgtgcactgtttgtcgtaaggcgtgtctggatacttttggggagcatgtcgt 433687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 13166562 - 13166622
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    |||||||||||||  || |||| ||||||||||||||||||||||| ||||||||||||||    
T  13166562 ttgatgaggtgtgctctgtttgttgtaaggcgtgtctggatactttcggggagcatgtcgt 13166622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 15291675 - 15291767
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagtaca 303  Q
    ||||||||||||||| | |||   |||||||||||||||||||||||||||||||||| || || | ||||| | || |||| ||||||||||    
T  15291675 ttgatgaggtgtgtcatgtttatcgtaaggcgtgtctggatacttttggggagcatgttgttcattgtaaggagcttcccggctttaagtaca 15291767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 26212235 - 26212295
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    ||||||| ||||||||| ||||  |||||||||| ||||||||||||||||||||||||||    
T  26212235 ttgatgaagtgtgtcctgtttgtcgtaaggcgtgcctggatacttttggggagcatgtcgt 26212295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 35310903 - 35310811
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagtaca 303  Q
    ||||||||||||| ||| |||| ||||||||||||||| |||||||||||||| |||| || || | ||||| | ||||| | ||||||||||    
T  35310903 ttgatgaggtgtgccctgtttgttgtaaggcgtgtctgaatacttttggggagtatgttgttcattgtaaggagctttccagctttaagtaca 35310811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 14631489 - 14631579
Alignment:
Q  34 aaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagt-ttttcaatacaaaacttatgttttaattcgtttt 123  Q
    ||||| ||| |||| |||||||| ||||||||||||| ||| |||| |||| |  | |||| |||||||||||||||||||||||| ||||    
T  14631489 aaaaacttaattttaaaaattgtacattcaatgttttaaaaggttaaaaacattttctttttaatacaaaacttatgttttaattcttttt 14631579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 4400394 - 4400484
Alignment:
Q  49 aaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtg 141  Q
    |||||||| | |||||| ||||||||| ||| ||| ||| ||||||||||  ||||||||||||||||||  |||| |  |||||||||||||    
T  4400394 aaaattgtacgttcaatattttgaaaatttaaaaatttattttttcaata--aaacttatgttttaattcccttttcacctctttaacttgtg 4400484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 27337148 - 27337055
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgtgcaatctaaggtgatttccggttttaagtacat 304  Q
    ||||||||||||| ||| ||||  ||||||| ||||||||||||||| ||||||||| ||| || | |||||   || |||| |||||||||||    
T  27337148 ttgatgaggtgtgccctgtttgtcgtaaggcatgtctggatacttttagggagcatgccgttcattgtaaggaacttcccggctttaagtacat 27337055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 3494608 - 3494472
Alignment:
Q  23 aaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttt 122  Q
    |||| |||| |||||||||  | ||||||||||||||||||   | || |||| ||| ||| |||  |||| ||||||| | |||| |||||||||  ||    
T  3494608 aaactaaatataaaaatttgatcttgaaaattgtgcattcataatcttaaaaacttaaaaatttatctttttaatacaacatttattttttaattccatt 3494509  T
Q  123 tttagatctttaacttgtgcccttaggacacaagtta 159  Q
    |||||||| ||| |||||| ||||| | |||||||||    
T  3494508 tttagatccttatcttgtgtccttaaggcacaagtta 3494472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 8041072 - 8041037
Alignment:
Q  131 tttaacttgtgcccttaggacacaagttagcatgac 166  Q
    |||||||||||||||||| |||||||||||||||||    
T  8041072 tttaacttgtgcccttagaacacaagttagcatgac 8041037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 23263006 - 23263079
Alignment:
Q  43 tttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaatt 117  Q
    ||||||||||||||||||||||||| || |||| ||| ||  |||  |||||||||||||| |||| ||||||||    
T  23263006 tttttgaaaattgtgcattcaatgtatt-aaaatttaaaattttatattttcaatacaaaagttatattttaatt 23263079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 12453966 - 12453854
Alignment:
Q  53 ttgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcg-ttttttagatctttaacttgtgcccttaggac 151  Q
    ||||| ||||||| | || |||| ||| ||| |||  |||||||| |||||||| | |||||||||| |||||||| || ||||||||||||       |    
T  12453966 ttgtgtattcaatatcttaaaaatttaaaaatttatcttttcaatgcaaaacttgtcttttaattcgcttttttagctccttaacttgtgcc-------c 12453874  T
Q  152 acaagttagcatgacccata 171  Q
    ||||||||||||||||||||    
T  12453873 acaagttagcatgacccata 12453854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 6534215 - 6534271
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatg 267  Q
    ||||||||||||||| | ||||  ||||||| |||||||||||||||  ||||||||    
T  6534215 ttgatgaggtgtgtcatgtttgtcgtaaggcatgtctggatacttttatggagcatg 6534271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 33741634 - 33741594
Alignment:
Q  132 ttaacttgtgcccttaggacacaagttagcatgacccataa 172  Q
    ||||||||| |||||| ||||||||||| ||||||||||||    
T  33741634 ttaacttgttcccttatgacacaagttaacatgacccataa 33741594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 39625189 - 39625066
Alignment:
Q  36 aaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaa 135  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| || |||| ||||| ||||||||| |||||||||||||| ||||||||||| ||||    
T  39625189 aaatttatttttgaaaattgtgcatttaatgtcttgaaaagttaaaatcttattttttgaatacaaaatttatgttttaattctttttttagatccttaa 39625090  T
Q  136 cttgtgcccttaggacacaagtta 159  Q
    ||||| ||||| || || ||||||    
T  39625089 cttgtccccttggggcataagtta 39625066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 39956267 - 39956153
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||  |||||||||| |||||||  ||||||||| |||| |||||||    
T  39956267 cacaagtttagaagccaaa-gtagaaatttatttttgaaaattgtgcattcaatgtcatgaaaagttaaaaacttatattttcaatataaaatttatgtt 39956169  T
Q  112 ttaattcgttttttag 127  Q
    ||| |||  |||||||    
T  39956168 ttatttctctttttag 39956153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 11077014 - 11076901
Alignment:
Q  50 aaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttagg 149  Q
    |||||||||| ||||| ||||  ||| ||| || ||||  ||||||| |||||| ||||||||||||||  |||||||||  |||||||||||| | | |    
T  11077014 aaattgtgcaatcaatattttagaaatttaaaatcttatattttcaagacaaaatttatgttttaattccatttttagattcttaacttgtgccttaacg 11076915  T
Q  150 acacaagttagcat 163  Q
    ||||||||||||||    
T  11076914 acacaagttagcat 11076901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 32024301 - 32024379
Alignment:
Q  89 tttttcaatacaaaacttatgttttaattc-gttttttagatctttaacttgtgcccttaggacacaagttagcatgacc 167  Q
    ||||| || ||||||||||||||||||||| |||||||| ||| ||||||||||   |||||||||||||||||||||||    
T  32024301 ttttttaaaacaaaacttatgttttaattctgtttttta-atccttaacttgtgtttttaggacacaagttagcatgacc 32024379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 50129086 - 50129215
Alignment:
Q  43 tttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagt-ttttcaata-caaaacttatgttttaattcgttttttagatctttaacttgt 140  Q
    ||||||||||||||||||||||| | || |||||||  ||| ||  | ||||||||| ||||| |||| |||||||||  ||||||| |  |||||||||    
T  50129086 tttttgaaaattgtgcattcaatatatt-aaaagtttgaaattttatcttttcaataacaaaagttattttttaattccatttttagtttcttaacttgt 50129184  T
Q  141 gcccttaggacacaagttagcatgacccata 171  Q
    ||||| ||| ||||||||| |||||||||||    
T  50129185 gccctaagggcacaagttaacatgacccata 50129215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 5050669 - 5050551
Alignment:
Q  49 aaaattgtgcattcaatgttttgaaaagttacaaacttagt-ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgccctta 147  Q
    ||||||||||||||||| | || |||| ||| ||| || || |||||||||||||| |||  |||||||||  ||||||| | ||||||||||||| |||    
T  5050669 aaaattgtgcattcaatatattaaaaattta-aaattttgtcttttcaatacaaaagttacattttaattccatttttagttttttaacttgtgccttta 5050571  T
Q  148 ggacacaagttagcatgaccc 168  Q
    || ||||||||| ||||||||    
T  5050570 gg-cacaagttaacatgaccc 5050551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 52411554 - 52411614
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    ||||| ||||||||||| ||||  |||||||||| ||| ||||||||||||||||||||||    
T  52411554 ttgataaggtgtgtcctgtttgtcgtaaggcgtgcctgaatacttttggggagcatgtcgt 52411614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 50170603 - 50170444
Alignment:
Q  15 aagtttagaaaccaaatgtaaaaatttattt-ttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtttt 113  Q
    ||||| |||||||||||||| || ||| ||| ||| |||||||||||||||||| || |||| ||  ||| |||  ||||||||| |||| |||| ||||    
T  50170603 aagttaagaaaccaaatgtagaagtttttttcttggaaattgtgcattcaatgtcttaaaaatttcaaaagttatcttttcaatataaaatttatttttt 50170504  T
Q  114 aattcgttttttagatctttaacttgtgccctt--aggacacaagttagcatgacccataa 172  Q
    | |||  |||| || || ||||||||||||||   | | ||||||||||||||| ||||||    
T  50170503 a-ttctattttaagctccttaacttgtgccctataaaggcacaagttagcatgatccataa 50170444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 53786139 - 53786103
Alignment:
Q  235 gtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    |||||||||| ||||||||||||||||||||||||||    
T  53786139 gtaaggcgtgcctggatacttttggggagcatgtcgt 53786103  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 41242292 - 41242157
Alignment:
Q  12 cacaagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgtt 111  Q
    |||||||| ||||||||||  ||||||  | || ||| |||||||||||| ||| ||||  ||| ||  || ||||  ||||||  ||| || ||||| |    
T  41242292 cacaagttaagaaaccaaagataaaaacattttgttggaaattgtgcatttaatattttagaaatttgaaatcttatcttttcaggacataatttatgat 41242193  T
Q  112 ttaattcgttttttagatctttaacttgtgccctta 147  Q
    |||||||  ||||||||| |||||||||||||||||    
T  41242192 ttaattctatttttagatttttaacttgtgccctta 41242157  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 34408161 - 34408202
Alignment:
Q  131 tttaacttgtgcccttaggacacaagttagcatgacccataa 172  Q
    |||||| ||||||||| |||||||||||| ||||||||||||    
T  34408161 tttaacatgtgccctttggacacaagttaacatgacccataa 34408202  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 45318288 - 45318207
Alignment:
Q  44 ttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagt-ttttcaatacaaaacttatgttttaattcgttttt 124  Q
    |||| ||||||||||||||| | ||||||||  ||| ||||||  | |||| ||||||||| |||||||||||||| |||||    
T  45318288 ttttaaaaattgtgcattcattattttgaaagtttaaaaactttttgtttttaatacaaaaattatgttttaattccttttt 45318207  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 45628451 - 45628480
Alignment:
Q  138 tgtgcccttaggacacaagttagcatgacc 167  Q
    ||||||||||||||||||||||||||||||    
T  45628451 tgtgcccttaggacacaagttagcatgacc 45628480  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 50164065 - 50164134
Alignment:
Q  90 ttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttaggacacaagtta 159  Q
    |||||||||||| | |||| |||||||||   ||||||||| ||| |||||||||| ||| |||||||||    
T  50164065 ttttcaatacaacatttattttttaattccacttttagatccttatcttgtgccctaagggcacaagtta 50164134  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 7501814 - 7501846
Alignment:
Q  235 gtaaggcgtgtctggatacttttggggagcatg 267  Q
    |||| ||||||||||||||||||||||||||||    
T  7501814 gtaatgcgtgtctggatacttttggggagcatg 7501846  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 29862228 - 29862192
Alignment:
Q  235 gtaaggcgtgtctggatacttttggggagcatgtcgt 271  Q
    |||||||||| || |||||||||||||||||||||||    
T  29862228 gtaaggcgtgcctagatacttttggggagcatgtcgt 29862192  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 33307 - 33153
Alignment:
Q  15 aagtttagaaaccaaatgtaaaaatttatttttgaaaattgtgcattcaatgttttgaaaagttacaaacttagttt----ttcaatacaaaacttatgt 110  Q
    ||||||||||   |||||||| || | ||||||||||||||||||||||||||||||||| |||| ||||||  |||    |||| || || ||||||||    
T  33307 aagtttagaagttaaatgtaataactaatttttgaaaattgtgcattcaatgttttgaaaggttaaaaacttttttttttcttcattagaacacttatgt 33208  T
Q  111 tttaattcgttttttagatctttaacttgtgcccttaggacacaagttagcatgaccc 168  Q
    |   |||  ||||||||||| |||||||||||| |||   ||||||||| ||||||||    
T  33207 t---atttcttttttagatccttaacttgtgcctttaaagcacaagttaacatgaccc 33153  T

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Target: scaffold0192 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 13423 - 13535
Alignment:
Q  50 aaattgtgcattcaatgttttgaaaagttacaaacttagtttttcaatacaaaacttatgttttaattcgttttttagatctttaacttgtgcccttagg 149  Q
    |||||||||||||||| || |  ||| ||| || ||||  ||||||| ||| || ||||| |||||||   |||||||||  ||||||||||||||||||    
T  13423 aaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattgcatttttagattcttaacttgtgcccttagg 13522  T
Q  150 acacaagttagca 162  Q
     ||||||||||||    
T  13523 gcacaagttagca 13535  T

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Target: scaffold0186 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 20176 - 20121
Alignment:
Q  211 ttgatgaggtgtgtcctttttgatgtaaggcgtgtctggatacttttggggagcat 266  Q
    ||||||||||||| ||||||||   ||||||||| ||||||||| |||||||||||    
T  20176 ttgatgaggtgtgccctttttgtcataaggcgtgcctggatactattggggagcat 20121  T

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