View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2254_high_6 (Length: 251)
Name: NF2254_high_6
Description: NF2254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2254_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 55004099 - 55004333
Alignment:
| Q |
17 |
atgatcaaaatctcactttggaagatcaacttaatgattttaagagaataaagtacatgaaaagtcacatagaggccttgtcaacagcaataaggtaatt |
116 |
Q |
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| T |
55004099 |
atgatcaaaatctcactttggaagatcaacttaatgattttaagagaataaagtacatgaaaagtcacatagaggccttgtcaacagcaataaggtaatt |
55004198 |
T |
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| Q |
117 |
gttatcaattttgttactctggcatcttattataattttatctaatcaaatgttggaacacctttgtaattgtttgttttgacattaatcaaacattatg |
216 |
Q |
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| T |
55004199 |
gttatcaattttgttactctggcatcttattataattttatctaatcaaattttggaacacctttgtaattgtttgttttgacattaatcaaacattatg |
55004298 |
T |
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| Q |
217 |
agaatgaaataaatttgtccaaccgtctctgttgt |
251 |
Q |
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| T |
55004299 |
agaatgaaataaatttgtccaaccgtctctgttgt |
55004333 |
T |
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