View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2254_low_2 (Length: 395)
Name: NF2254_low_2
Description: NF2254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2254_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 40748152 - 40747777
Alignment:
| Q |
17 |
agtttttaccacaagtgttaatacaaagaaggtgacattgaagtattttaccaaggagctaacttcatttaatgattcactatttgttgacttaagagaa |
116 |
Q |
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| T |
40748152 |
agtttttaccacaagtgttaatacaatgaaggtgacattgaagtattttactaaggagctaacttcatctaatgattcactatttgttgacataagagaa |
40748053 |
T |
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| Q |
117 |
acataagatgttatggtacaacgagattccaacatctaaaccattgaatcaagtagtcatctaaacaaagttgaattacttcatctgattttagtagaca |
216 |
Q |
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| T |
40748052 |
acataagatgttatggtacaacgagattccaacatctaaaacattgaatcaagtagtcatctaaacaaagttgaattacttcatctgattttagtagaca |
40747953 |
T |
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| Q |
217 |
ttgacaatatcatttcatgtagaaagtattctaatctacatgaatattgtaactacaatgctataattaactagcttaaatagagacaaatcttgatcta |
316 |
Q |
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| T |
40747952 |
ttgtccatatcatttccggcagaaagtattctaatctacgtgaatattgtaactacaatgctataattaaccagcttaaatagagacaaatcttgatcta |
40747853 |
T |
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| Q |
317 |
atatttaggacactctcttttgagatggtgaatgaatatcaatcattacaaacttgtaagtaagttggttgaattg |
392 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40747852 |
atatttacgacactctcttttgagatggtgaatgaatatcaatcattacaagtttgtaagtaagttggttgaattg |
40747777 |
T |
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