View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2254_low_3 (Length: 365)
Name: NF2254_low_3
Description: NF2254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2254_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 26359459 - 26359129
Alignment:
| Q |
1 |
tacatcagattagcactaacccatatactacaagacaacctcaaaacacatctaaaataacaaaattaacaaactaccaaatccaaacaagatacttcaa |
100 |
Q |
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| T |
26359459 |
tacatcagattagcactaacccata--ctacaagacaacctcaaaatacatctaaaataacaaatttaacaaactaccaaatccaaacaagatacttcaa |
26359362 |
T |
|
| Q |
101 |
tcactacatgctccttcgaccnnnnnnnnnnnnnnnnntcagtgcttattgcattcttggtagaaccaactttgcttaactccaaccaaaaccctat-cc |
199 |
Q |
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|||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |
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| T |
26359361 |
tcactacatgcttcttcgaccaaaaaataaataaaaa-tcagtgcttattgcattgttggtagaaccaacgttgcttaactccaaccaaaaccctatccc |
26359263 |
T |
|
| Q |
200 |
ccttataatattc-aaataatgatcgtctatgtttggtatcacggtgacatattataattttagaaaaactacaaagtatagttttaagaatcgtcgtga |
298 |
Q |
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||||||||||||| ||| ||||||||||| ||||||||||| |||||||| ||||| ||||| | ||||||| |||| ||||||||||||||||||||| |
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| T |
26359262 |
ccttataatattcaaaaaaatgatcgtct-tgtttggtatcgcggtgacacattatgattttgcagaaactacgaagtgtagttttaagaatcgtcgtga |
26359164 |
T |
|
| Q |
299 |
ttctaaatc-tgacatatctaccatgataccaaac |
332 |
Q |
| |
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|| | |||| | ||||||||||| ||||||||||| |
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| T |
26359163 |
ttttgaatcttaacatatctaccgtgataccaaac |
26359129 |
T |
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