View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2254_low_4 (Length: 339)

Name: NF2254_low_4
Description: NF2254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2254_low_4
NF2254_low_4
[»] chr8 (13 HSPs)
chr8 (11-324)||(37927460-37927773)
chr8 (45-176)||(45524897-45525028)
chr8 (33-145)||(24683630-24683742)
chr8 (64-140)||(9008982-9009058)
chr8 (72-168)||(28485429-28485525)
chr8 (34-180)||(29011079-29011223)
chr8 (60-168)||(9953705-9953813)
chr8 (28-95)||(16983502-16983569)
chr8 (33-140)||(32022852-32022959)
chr8 (38-173)||(34366707-34366842)
chr8 (33-86)||(6098787-6098840)
chr8 (135-176)||(38091399-38091440)
chr8 (50-126)||(31703826-31703902)
[»] chr2 (13 HSPs)
chr2 (28-175)||(19953424-19953571)
chr2 (28-176)||(19193507-19193655)
chr2 (60-176)||(42669766-42669882)
chr2 (33-152)||(18949204-18949323)
chr2 (28-176)||(6420459-6420605)
chr2 (28-168)||(31494242-31494382)
chr2 (121-176)||(20458939-20458994)
chr2 (93-191)||(385050-385148)
chr2 (33-83)||(45554679-45554729)
chr2 (45-168)||(37077996-37078119)
chr2 (38-83)||(11826148-11826193)
chr2 (28-168)||(30706305-30706445)
chr2 (51-95)||(33678144-33678188)
[»] chr7 (15 HSPs)
chr7 (28-182)||(46994367-46994521)
chr7 (51-176)||(23434724-23434848)
chr7 (33-173)||(2911792-2911932)
chr7 (28-175)||(4089983-4090128)
chr7 (28-110)||(20954773-20954855)
chr7 (60-176)||(24845466-24845582)
chr7 (60-183)||(44350176-44350299)
chr7 (45-110)||(25003454-25003519)
chr7 (89-175)||(33852535-33852621)
chr7 (60-174)||(29462040-29462152)
chr7 (93-168)||(39523611-39523686)
chr7 (117-183)||(32721020-32721086)
chr7 (33-83)||(37489914-37489964)
chr7 (33-86)||(6580012-6580065)
chr7 (28-93)||(48374444-48374509)
[»] chr5 (9 HSPs)
chr5 (33-197)||(25002015-25002179)
chr5 (60-182)||(7585008-7585130)
chr5 (37-180)||(36325462-36325604)
chr5 (33-145)||(41034439-41034551)
chr5 (101-176)||(10299913-10299988)
chr5 (28-162)||(6529878-6530012)
chr5 (28-95)||(28490727-28490794)
chr5 (33-83)||(30325884-30325934)
chr5 (60-113)||(5630585-5630638)
[»] chr4 (17 HSPs)
chr4 (36-176)||(5994880-5995020)
chr4 (28-182)||(51339969-51340122)
chr4 (28-166)||(51904620-51904758)
chr4 (60-176)||(5027432-5027547)
chr4 (28-181)||(27654502-27654653)
chr4 (50-176)||(56328706-56328832)
chr4 (60-176)||(8567802-8567918)
chr4 (95-176)||(3976404-3976485)
chr4 (101-176)||(8586545-8586620)
chr4 (34-168)||(25719123-25719257)
chr4 (28-129)||(19677329-19677430)
chr4 (28-112)||(5545670-5545754)
chr4 (28-83)||(8109076-8109131)
chr4 (33-83)||(39471277-39471327)
chr4 (61-110)||(32846185-32846234)
chr4 (131-171)||(16318437-16318477)
chr4 (37-109)||(16318893-16318965)
[»] chr6 (4 HSPs)
chr6 (33-145)||(6163528-6163640)
chr6 (45-176)||(26170912-26171043)
chr6 (50-176)||(25326859-25326985)
chr6 (50-176)||(26159394-26159520)
[»] chr1 (18 HSPs)
chr1 (45-172)||(25010025-25010151)
chr1 (33-181)||(28274811-28274957)
chr1 (33-176)||(18473677-18473820)
chr1 (33-110)||(4817181-4817257)
chr1 (60-152)||(7549637-7549730)
chr1 (76-181)||(15741860-15741965)
chr1 (28-152)||(18157090-18157212)
chr1 (28-177)||(21970282-21970431)
chr1 (38-152)||(40125857-40125967)
chr1 (40-126)||(39150023-39150110)
chr1 (87-181)||(14340984-14341076)
chr1 (66-145)||(33234465-33234544)
chr1 (132-173)||(18953272-18953313)
chr1 (34-83)||(19101612-19101661)
chr1 (134-179)||(44807130-44807175)
chr1 (66-138)||(2592970-2593042)
chr1 (38-86)||(28941839-28941887)
chr1 (92-168)||(31602130-31602206)
[»] chr3 (16 HSPs)
chr3 (64-165)||(10798317-10798418)
chr3 (66-182)||(11832146-11832261)
chr3 (45-176)||(214063-214193)
chr3 (50-145)||(7791887-7791982)
chr3 (70-176)||(22813318-22813424)
chr3 (33-195)||(34706591-34706753)
chr3 (36-145)||(53655419-53655528)
chr3 (60-168)||(8475190-8475298)
chr3 (28-83)||(20791416-20791471)
chr3 (62-169)||(44225873-44225980)
chr3 (28-83)||(52123961-52124016)
chr3 (60-195)||(52223409-52223544)
chr3 (60-113)||(21175582-21175635)
chr3 (60-173)||(38169029-38169142)
chr3 (34-83)||(44844102-44844151)
chr3 (28-127)||(43657830-43657927)
[»] scaffold0005 (1 HSPs)
scaffold0005 (28-181)||(296861-297012)
[»] scaffold0238 (1 HSPs)
scaffold0238 (63-152)||(15241-15330)
[»] scaffold0886 (1 HSPs)
scaffold0886 (78-152)||(3297-3371)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 37927460 - 37927773
Alignment:
Q  11 cagagaatgagaataagagcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatg 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||     
T  37927460 cagagaatgagaacaagagcagcactctctttttaacattctctccaatactcatttttttattggcttaaatcatagtgagtctcacattttggaaata 37927559  T
Q  111 gatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtccttaacatttctcatgagaacaaacatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37927560 gatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtccttaacatttctcatgagaacaaacatg 37927659  T
Q  211 gaagtttcggcactaaccatgtaagtatatataaatgttcatgccaaaatgcacaaaacaagcaacaggcaataaagaaatttggtcccttccattgttg 310  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37927660 gaagtttcagcactaaccatgtaagtatatataaatgttcatgccaaaatgcacaaaacaagcaacaggcaataaagaaatttggtcccttccattgttg 37927759  T
Q  311 ggtgtaagaaaatt 324  Q
    ||||||||||||||    
T  37927760 ggtgtaagaaaatt 37927773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 45524897 - 45525028
Alignment:
Q  45 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 144  Q
    |||| ||||||||| ||||||||||| |||||||||||| || ||| || ||||| ||||||||||| | | ||| |||||| || ||||||||||| ||    
T  45524897 aacactctctccaacactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggttccactcaaagtggtgggtcatacattgatt 45524996  T
Q  145 tcatccaacaagagaatgagtgttgaagagag 176  Q
    | |||||| |||| ||||||||||||||||||    
T  45524997 ttatccaataagaaaatgagtgttgaagagag 45525028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 24683742 - 24683630
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    ||||||||||| |||| | ||||||| ||||||||| | |||||||||||| ||  || |||||||||||||||||||| | | |||||||||| || ||    
T  24683742 cactctcttttcaacactatctccaacactcactttctgattggcttaaatcatgatgggtctcacattttggaaatgggttccacttaaagtggtgggt 24683643  T
Q  133 catacattggttt 145  Q
    || ||||||||||    
T  24683642 cacacattggttt 24683630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 9008982 - 9009058
Alignment:
Q  64 acttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacatt 140  Q
    |||||||||||||||||||| |  |||||||||||| |||| |||||| | | ||||||||||||| | ||||||||    
T  9008982 acttttttattggcttaaatcaatgtgagtctcacactttgaaaatgggttccacttaaagtgatgggacatacatt 9009058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 28485429 - 28485525
Alignment:
Q  72 attggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgtt 168  Q
    ||||| ||||||||  ||| |||||||| ||||||||||| | | |||||||||| || | ||||||||  |||||||||| |||||||| ||||||    
T  28485429 attggtttaaattaatgtgggtctcacactttggaaatgggttccacttaaagtggtgggacatacattaatttcatccaataagagaataagtgtt 28485525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 29011223 - 29011079
Alignment:
Q  34 actctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtc 133  Q
    ||||| |||| |||| |||||| || |||||||| |||||||| ||||||    ||||||| |||| ||||||||||| | | | | |||||| |  | |    
T  29011223 actctattttcaacactctctcaaacactcacttctttattggtttaaatcgaggtgagtcacacactttggaaatgggttccattcaaagtggtaggac 29011124  T
Q  134 atacattggtttcatccaacaagagaatgagtgttgaagagagagtg 180  Q
    ||||||| ||||||||||  |||||||||||||||  ||||||||||    
T  29011123 atacattagtttcatccattaagagaatgagtgtt--agagagagtg 29011079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 9953705 - 9953813
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    ||||||||||||||||| |||||| |  |||| ||||||| ||||||||||  | | |||||||||| || | || |||||  |||||||| | ||||||    
T  9953705 actcacttttttattggtttaaatcaaggtgaatctcacactttggaaatgagttccacttaaagtggtgggacacacattaatttcatcccataagaga 9953804  T
Q  160 atgagtgtt 168  Q
     ||||||||    
T  9953805 gtgagtgtt 9953813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 16983569 - 16983502
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtct 95  Q
    |||| ||||||||||| |||| |||||| |||||||||| | ||||||| |||||| || ||||||||    
T  16983569 agcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgagtct 16983502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 32022852 - 32022959
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    |||| ||||||||| |||||||| || ||||||||  |  |||| |||||||| ||||||||||||| |||  |||| | | |||||| ||||| ||||     
T  32022852 cactttctttttaatattctctcaaacactcacttcctccttggtttaaattaaagtgagtctcacactttaaaaataggttctacttgaagtggtgagg 32022951  T
Q  133 catacatt 140  Q
    ||||||||    
T  32022952 catacatt 32022959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 34366707 - 34366842
Alignment:
Q  38 tctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatac 137  Q
    ||||||||||||| ||||    |||||||||||||||| ||||||| || ||  |||||| ||||| |||||||||   | | |||||| ||  ||||||    
T  34366707 tctttttaacattatctctgccactcacttttttattgacttaaataatggtaggtctcatattttagaaatggatttcattcaaagtggtggatcatac 34366806  T
Q  138 attggtttcatccaacaagagaatgagtgttgaaga 173  Q
    | ||||||||||||| || | |||||  ||||||||    
T  34366807 aatggtttcatccaataaaaaaatgaacgttgaaga 34366842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 6098787 - 6098840
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattat 86  Q
    ||||||||||| ||||||||||| |||||||||| | ||||||  |||||||||    
T  6098787 cactctcttttaaacattctctctaatactcactctcttattgatttaaattat 6098840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 38091440 - 38091399
Alignment:
Q  135 tacattggtttcatccaacaagagaatgagtgttgaagagag 176  Q
    ||||||||||| |||||| ||||||||||||||| |||||||    
T  38091440 tacattggttttatccaataagagaatgagtgttcaagagag 38091399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 31703902 - 31703826
Alignment:
Q  50 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtg 126  Q
    ||||||||| ||||||||||||||||| | ||||||  |||  | ||||| ||||||||||||| | || |||||||    
T  31703902 tctctccaagactcacttttttattggttaaaattaatgtggatatcacactttggaaatggatcccacataaagtg 31703826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 19953571 - 19953424
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| | | ||||||||||     
T  19953571 agcaacactctctttttaacattttctccaatactcacttttttattggattaaatcatagtgagtctcacactttggaaatgggttccacttaaagtgg 19953472  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagaga 175  Q
    || |||||||||||||||||||||| || |||||||||||||||||||    
T  19953471 tgggtcatacattggtttcatccaataaaagaatgagtgttgaagaga 19953424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 19193507 - 19193655
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| |||| ||||||||| ||||||||| | ||| | |||||| || ||| |||||| | ||||||||| | |   ||||||||||     
T  19193507 agcaacactctcttttcaacactctctccaacactcactttctaattagtttaaatcatggtgggtctcatactttggaaataggtttcacttaaagtgg 19193606  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 176  Q
    || ||||||||||||||| |||||| ||||||||||||||| |||||||    
T  19193607 tgggtcatacattggttttatccaataagagaatgagtgttcaagagag 19193655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 42669766 - 42669882
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    ||||||||||| |||||||||||| || ||| || ||||| ||||||||||| |   |||||||||| || ||||||||||| ||  |||||| |||| |    
T  42669766 actcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggtttcacttaaagtggtgggtcatacattgattctatccaataagaaa 42669865  T
Q  160 atgagtgttgaagagag 176  Q
    |||||||||||||||||    
T  42669866 atgagtgttgaagagag 42669882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 18949204 - 18949323
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    ||||||||||| |||| | ||||||| ||||| ||| | |||||||||||| || ||| |||||||| |||  |||||| | | |||||||||||||  |    
T  18949204 cactctcttttcaacactttctccaacactcaatttctaattggcttaaatcatggtgggtctcacactttaaaaatgggttccacttaaagtgatggat 18949303  T
Q  133 catacattggtttcatccaa 152  Q
    ||||||||||||| ||||||    
T  18949304 catacattggttttatccaa 18949323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 6420459 - 6420605
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| |||| ||||||||  ||||||||| |||||||||||||| || ||| ||||||||||  |||||| | |   ||||||| ||     
T  6420459 agcaacactctcttttcaacactctctccaccactcactttcttattggcttaaatcatggtgggtctcacatt--ggaaataggtttcacttaaaatgg 6420556  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 176  Q
    || ||||||||||  ||||| |||| || | ||||||||||||| ||||    
T  6420557 tgggtcatacattaatttcacccaataaaaaaatgagtgttgaaaagag 6420605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 31494382 - 31494242
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| |||| ||||   || ||||||||  |||||||||||||| |  ||| ||||||||  |||||||||| | | |||||||||      
T  31494382 agcaacactctcttttcaacactctcctaaacactcacttcattattggcttaaatcaaggtgggtctcacacattggaaatgggttccacttaaagtag 31494283  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgtt 168  Q
    || | ||||||||  |||||||||| |||||| ||||||||    
T  31494282 tgggacatacattattttcatccaataagagagtgagtgtt 31494242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 20458994 - 20458939
Alignment:
Q  121 aaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 176  Q
    |||||| ||||||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  20458994 aaagtggtgagtcaaacaatggtttcatccaataagagaatgagtgtttaagagag 20458939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 385050 - 385148
Alignment:
Q  93 tctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtccttaacatt 191  Q
    |||||||  ||| |||||||| | |||||| ||| || | |||||| | ||||||||||| |||||| ||||||||||| | ||||||||| |||||||    
T  385050 tctcacacattgaaaatggattccacttaaggtggtgggacatacactagtttcatccaataagagagtgagtgttgaaaatagagtgtccctaacatt 385148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 45554729 - 45554679
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||| ||||||    
T  45554729 cactctcttttgaacattctctctaatactcactttcttattggtttaaat 45554679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 37078119 - 37077996
Alignment:
Q  45 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 144  Q
    |||| |||||| || ||||||||  ||||||| ||||||||  ||| ||||||||  |||||||||||| | |||||||||| || | |||||| |  ||    
T  37078119 aacactctctcaaacactcacttcattattggtttaaattaaggtgggtctcacacattggaaatggattccacttaaagtggtgggacatacactaatt 37078020  T
Q  145 tcatccaacaagagaatgagtgtt 168  Q
     ||||||| |||||| || |||||    
T  37078019 acatccaataagagagtgtgtgtt 37077996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 11826193 - 11826148
Alignment:
Q  38 tctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    |||||||||||||||||| |||| |||||||||||| | |||||||    
T  11826193 tctttttaacattctctctaatattcacttttttatcgacttaaat 11826148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 30706445 - 30706305
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| |||| |||||| || ||||||||| || |||| ||||||||  ||| |||||| |  ||| |||||  | | | ||||| ||     
T  30706445 agcaacactctcttttcaacactctctcaaacactcactttattgttggtttaaattaaggtgggtctcatacattgaaaatgagttccatttaaactgg 30706346  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgtt 168  Q
    |||| ||||||||  ||||||| || |||||| ||||||||    
T  30706345 tgagacatacattaatttcatcaaataagagagtgagtgtt 30706305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 33678144 - 33678188
Alignment:
Q  51 ctctccaatactcacttttttattggcttaaattatagtgagtct 95  Q
    ||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  33678144 ctctctaatattcacttttttattggtttaaattattgtgagtct 33678188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 46994367 - 46994521
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| |||||||||||||||  |||||| || |||||||||||||||||||||||| || ||| |||||||| ||||||||||||||  ||||||||||     
T  46994367 agcaacactctctttttaacgctctctctaacactcacttttttattggcttaaatcatggtgggtctcacactttggaaatggatatcacttaaagtgg 46994466  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtc 182  Q
    || ||||||||||| ||||||| || || | ||||| ||||||| | ||||||||    
T  46994467 tgggtcatacattgatttcatctaataaaaaaatgaatgttgaaaatagagtgtc 46994521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 23434848 - 23434724
Alignment:
Q  51 ctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatcc 150  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||  | | |||||||||| ||  |||||||||||||| ||||    
T  23434848 ctctcaaatactcacttttttattggcttaaattatggtgggtctcacactttagaaatgtgttc-acttaaagtggtggatcatacattggttttatcc 23434750  T
Q  151 aacaagagaatgagtgttgaagagag 176  Q
    || |||||||||||||||||||||||    
T  23434749 aataagagaatgagtgttgaagagag 23434724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 2911932 - 2911792
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||||| || |||  ||||||| ||| ||||| | | | ||||||||||||||||    
T  2911932 cactttcttttcaacactctctccaatactcacttttttattggcttaaatcatggtggatctcacactttagaaataggttccacttaaagtgatgagt 2911833  T
Q  133 catacattggtttcatccaacaagagaatgagtgttgaaga 173  Q
    ||||||||  ||  || ||| ||||||||||||||||||||    
T  2911832 catacattaattatattcaataagagaatgagtgttgaaga 2911792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 4089983 - 4090128
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||  ||| |||| || |||||||||||| ||| ||||||| ||| ||  |||||||    
T  4089983 agcagcactttctttttaacattctctccaacactcacttttttataagctaaaatcatggtgagtctcacactttagaaatgggtaccac--aaagtga 4090080  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagaga 175  Q
    || |||||| |||| |||||||||| || | ||| |||||| ||||||    
T  4090081 tgggtcatagattgatttcatccaataaaaaaataagtgttaaagaga 4090128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 20954855 - 20954773
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatg 110  Q
    |||| ||||||||||| |||| |||||| || |||||||||||||||||||||||| || |||||||||||| ||| ||||||    
T  20954855 agcaacactctcttttcaacactctctcaaacactcacttttttattggcttaaatcatggtgagtctcacactttagaaatg 20954773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 24845466 - 24845582
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    ||||||||| | |||||||||||| || |||||||||||| ||||||||||| | | |||||||||| || |||| |||||||||| | ||||  ||| |    
T  24845466 actcactttctaattggcttaaatcatggtgagtctcacactttggaaatgggttccacttaaagtggtgggtcacacattggtttaagccaattagaaa 24845565  T
Q  160 atgagtgttgaagagag 176  Q
     ||| ||||||||||||    
T  24845566 gtgaatgttgaagagag 24845582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 44350299 - 44350176
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    ||||||||| | |||||||||||| || ||| |||||||| ||||||||||||| | ||||||| || || |||| |||||||||| | ||||  ||| |    
T  44350299 actcactttctaattggcttaaatcatggtgggtctcacactttggaaatggattccacttaaaatggtgggtcacacattggtttaagccaattagaaa 44350200  T
Q  160 atgagtgttgaagagagagtgtcc 183  Q
     |||| |||||| |||||||||||    
T  44350199 gtgagggttgaaaagagagtgtcc 44350176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 25003519 - 25003454
Alignment:
Q  45 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatg 110  Q
    |||| ||||| ||| |||||||||||||||||||||||||||  || |||||||| ||||||||||    
T  25003519 aacactctctgcaacactcacttttttattggcttaaattatgatgggtctcacactttggaaatg 25003454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 33852535 - 33852621
Alignment:
Q  89 tgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagaga 175  Q
    |||| ||||||| |||||||||||| | |||||||||| || | |||||| |  ||||||| || ||||||||||||||| ||||||    
T  33852535 tgagactcacatattggaaatggattccacttaaagtggtgggacatacactaatttcatctaataagagaatgagtgttaaagaga 33852621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 29462040 - 29462152
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    ||||||||| | |||| | |||||||| ||  |||||||  ||||||||||  | | |||||||||  |||||||||||||| ||| || ||| || |||    
T  29462040 actcactttataattgtcctaaattatggtttgtctcac--tttggaaatgtgttccacttaaagtagtgagtcatacattgattttattcaataaaaga 29462137  T
Q  160 atgagtgttgaagag 174  Q
    |||||||||||||||    
T  29462138 atgagtgttgaagag 29462152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 39523686 - 39523611
Alignment:
Q  93 tctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgtt 168  Q
    |||||||| |||||||||| | | |||||||||| |||| |||||  | ||||||||||| || ||||||||||||    
T  39523686 tctcacatattggaaatgggttccacttaaagtggtgagacataccctagtttcatccaataaaagaatgagtgtt 39523611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 32721020 - 32721086
Alignment:
Q  117 acttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtcc 183  Q
    ||||||| ||||| ||||||||||| ||| |||||| || |||||||| ||| || |||||||||||    
T  32721020 acttaaattgatgggtcatacattgattttatccaataaaagaatgagagttaaaaagagagtgtcc 32721086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 37489914 - 37489964
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    ||||||||||| ||||||||||| || |||||||| |||||||| ||||||    
T  37489914 cactctcttttcaacattctctcaaacactcacttgtttattggtttaaat 37489964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 6580012 - 6580065
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattat 86  Q
    ||||||||||| |||| |||||| |||||||||| | ||||||| |||||||||    
T  6580012 cactctcttttgaacactctctctaatactcactctcttattggtttaaattat 6580065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 48374444 - 48374509
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagt 93  Q
    |||| ||||||||||| |||| |||||| |||||||||| | || |||| ||||||||| ||||||    
T  48374444 agcaacactctcttttgaacactctctctaatactcactctcttgttggtttaaattattgtgagt 48374509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 25002015 - 25002179
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    ||||||||||| |||| ||||||||| ||||||||| | ||||| |||||| |||||| |||||||| |||||||||||   | |||||||||| || ||    
T  25002015 cactctcttttcaacactctctccaacactcactttctaattggtttaaatcatagtgggtctcacactttggaaatgggctccacttaaagtggtgggt 25002114  T
Q  133 catacattggtttcatccaacaagagaatgagtgttgaagagagagtgtccttaacatttctcat 197  Q
    || |||||||||| | ||||  ||| | ||||||||||| ||||||||||| |  ||||||||||    
T  25002115 cacacattggtttaagccaattagaaagtgagtgttgaaaagagagtgtccctggcatttctcat 25002179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 7585130 - 7585008
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    ||||||||| ||||| | ||||||||  ||||||||||||  |||||||||| |   ||||||||||||  | |||||| | ||||||||||| ||||||    
T  7585130 actcactttattatttgtttaaattaaggtgagtctcacacattggaaatgggtttcacttaaagtgataggacatacactagtttcatccaataagaga 7585031  T
Q  160 atgagtgttgaagagagagtgtc 182  Q
    |||||||||||| ||||||||||    
T  7585030 atgagtgttgaaaagagagtgtc 7585008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 36325604 - 36325462
Alignment:
Q  37 ctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcata 136  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||||| || ||| |||| ||| |||  |||||| | | |||||||||| || |||| |    
T  36325604 ctcttttcaacattctctccaacactcactttttaattggcttaaatcatggtgggtcttacacttt-aaaatgggttccacttaaagtggtgggtcaca 36325506  T
Q  137 cattggtttcatccaacaagagaatgagtgttgaagagagagtg 180  Q
    ||||||||| | ||||  ||| | ||||||||||| ||| ||||    
T  36325505 cattggtttaagccaattagaaagtgagtgttgaaaagatagtg 36325462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 41034439 - 41034551
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    ||||||||||| |||| ||| ||||| ||||||||| | |||||||||||| || ||| |||||||| ||||||||||| | | ||||||| || ||||     
T  41034439 cactctcttttcaacactctatccaacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatgggttccacttaaaatggtgagc 41034538  T
Q  133 catacattggttt 145  Q
    || | ||||||||    
T  41034539 cacatattggttt 41034551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 10299988 - 10299913
Alignment:
Q  101 tttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 176  Q
    ||||||||||| | | ||| |||||| || ||||| |||||| ||||||||| |||||||||||||||||||||||    
T  10299988 tttggaaatgggtcccactaaaagtggtgggtcatgcattgggttcatccaataagagaatgagtgttgaagagag 10299913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 6529878 - 6530012
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| |||| | |||| || |||| |||| || |||||||||||||  ||||||||||||  || ||||||| | | ||| ||| ||     
T  6529878 agcaacactctcttttcaacactttctcaaacactcgctttatttttggcttaaattaaggtgagtctcacacattagaaatgggttccactaaaaatgg 6529977  T
Q  128 tgagtcatacattggtttcatccaacaagagaatg 162  Q
    || | |||||||| ||||||||||| |||||||||    
T  6529978 tgggacatacattagtttcatccaataagagaatg 6530012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 28490727 - 28490794
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtct 95  Q
    |||| ||||||||||| |||| |||||| |||||||||| | ||||||| ||||||||| ||| ||||    
T  28490727 agcaacactctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtct 28490794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 30325884 - 30325934
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    ||||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  30325884 cactctcttttgaacactctctctaatactcactttcttattggtttaaat 30325934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 5630638 - 5630585
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggat 113  Q
    ||||||||| ||||||||||||||||| ||| |||||| | |||| ||||||||    
T  5630638 actcactttattattggcttaaattatggtgggtctcatactttgaaaatggat 5630585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 5994880 - 5995020
Alignment:
Q  36 tctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcat 135  Q
    |||||||| |||| ||||||||| | ||||||| | |||| ||||||| || ||| ||||||||  |||||||||| | | |||||||||| ||||||||    
T  5994880 tctcttttcaacactctctccaacattcactttctaattgacttaaatcatggtgggtctcacacattggaaatgggttccacttaaagtggtgagtcat 5994979  T
Q  136 acattggtttcatccaacaagagaatgagtgttgaagagag 176  Q
    ||||| |||| |||||| ||||||||||||||| |||||||    
T  5994980 acattagttttatccaataagagaatgagtgttaaagagag 5995020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 51339969 - 51340122
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| |||||| ||||||||| ||||| ||  ||||| ||| |||||||||||||| |||||| |||||||| ||||||||| | |   |||||||| |     
T  51339969 agcaacactctttttttaacactctcttcac-actcattttcttattggcttaaatcatagtgggtctcacactttggaaataggtttcacttaaagcgg 51340067  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgtc 182  Q
    || ||| ||||||||||||||| || || ||||||| ||||||||||||||||||    
T  51340068 tgggtcgtacattggtttcatcaaataaaagaatgaatgttgaagagagagtgtc 51340122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 51904620 - 51904758
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| |||| |||||| || ||| || || |||||||||||||| || ||| |||||||| |||| |||| | | | |||||||||||    
T  51904620 agcaacactctcttttcaacactctctctaacacttacattcttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagtga 51904719  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtg 166  Q
    || ||||||||||| ||||||| || |||||||||||||    
T  51904720 tgggtcatacattgatttcatctaataagagaatgagtg 51904758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 5027432 - 5027547
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    |||||||||||||||||||||||| |   |||||||||||||||| |||| ||| | ||||||||||||| |||||| |||| || ||||||| || | |    
T  5027432 actcacttttttattggcttaaatcaagatgagtctcacattttgaaaatcgattcaacttaaagtgatgggtcatatattgattacatccaataa-aaa 5027530  T
Q  160 atgagtgttgaagagag 176  Q
    ||||||||| |||||||    
T  5027531 atgagtgttaaagagag 5027547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 27654653 - 27654502
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| |||| |||||| || ||||| ||| ||||||| |||||| |  |||  | |||||  |||||||||| | | ||||||||||     
T  27654653 agcaacactctcttttcaacactctctcaaacactcaatttattattggtttaaatcaaggtggatttcacacgttggaaatgggttccacttaaagtgg 27654554  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgt 181  Q
    || | |||||||| |||| |||||| |||||||||||||||  |||||||||||    
T  27654553 tgggacatacattagttttatccaataagagaatgagtgtt--agagagagtgt 27654502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 56328832 - 56328706
Alignment:
Q  50 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatc 149  Q
    ||||||||| |||||||||| ||||| ||||||| |||||| ||  |||| ||| ||||||| ||   |||||||||  | ||||||  |||||||||||    
T  56328832 tctctccaacactcacttttgtattgacttaaatcatagtgtgttccacactttagaaatgggtatctcttaaagtgtcgggtcataggttggtttcatc 56328733  T
Q  150 caacaagagaatgagtgttgaagagag 176  Q
    | | ||||||||||||||| |||||||    
T  56328732 cgataagagaatgagtgttaaagagag 56328706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 8567918 - 8567802
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    ||||||||||||| |||||||||| ||   ||||| ||   ||||| ||||||| | ||| |||||| || |||||||| ||||||||| ||| ||||||    
T  8567918 actcacttttttaatggcttaaatcatgacgagtcgcatgctttgggaatggattccactcaaagtggtgggtcatacaatggtttcatgcaataagaga 8567819  T
Q  160 atgagtgttgaagagag 176  Q
    |||| ||||||||||||    
T  8567818 atgaatgttgaagagag 8567802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 3976404 - 3976485
Alignment:
Q  95 tcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 176  Q
    ||||||||| ||||||| | | ||||||| || ||  |||||||||||||| ||| || |||||||||||||||||||||||    
T  3976404 tcacattttagaaatgggttccacttaaaatggtggatcatacattggttttatcaaataagagaatgagtgttgaagagag 3976485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 8586620 - 8586545
Alignment:
Q  101 tttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagag 176  Q
    ||||| ||||||| | ||| |||||| || |||||||| ||||||||| ||| |||||||||| ||||||||||||    
T  8586620 tttgggaatggattccactcaaagtggtgggtcatacaatggtttcatgcaataagagaatgaatgttgaagagag 8586545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 25719123 - 25719257
Alignment:
Q  34 actctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtc 133  Q
    |||||||||| |||| | |||| |||||||||| | | ||||| |||||| || ||| |||  |||||||||||||| |  | || ||||||| || | |    
T  25719123 actctcttttgaacaatttctctaatactcactctctgattgggttaaatcattgtgggtcctacattttggaaatgaaacccacataaagtggtgggac 25719222  T
Q  134 atacattggtttcatccaacaagagaatgagtgtt 168  Q
    |||||||| ||||| |||| |||||| ||||||||    
T  25719223 atacattgatttcaaccaataagagagtgagtgtt 25719257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 19677430 - 19677329
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| |||| ||||||||||| ||||||||| ||||||||| | ||||| |||||| |||||   ||||||| |||| |||||| |   |||||||||||    
T  19677430 agcaacactatctttttaacaatctctccaacactcactttctaattggtttaaatcatagtagatctcacactttgaaaatgggtttcacttaaagtga 19677331  T
Q  128 tg 129  Q
    ||    
T  19677330 tg 19677329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 5545754 - 5545670
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatgga 112  Q
    |||| ||||||||||| |||| |||||| |||||| ||||||| ||| |||||||| |  ||| |||| |||||||| |||||||    
T  5545754 agcaacactctcttttgaacactctctctaatacttactttttaatttgcttaaatcaatgtgggtcttacattttgaaaatgga 5545670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 8109131 - 8109076
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    |||| ||||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  8109131 agcaacactctcttttgaacactctctctaatactcactttcttattggtttaaat 8109076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 39471327 - 39471277
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    ||||||||||| ||||||||||| |||||||||| | ||||||| ||||||    
T  39471327 cactctcttttaaacattctctctaatactcactctcttattggtttaaat 39471277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 32846234 - 32846185
Alignment:
Q  61 ctcacttttttattggcttaaattatagtgagtctcacattttggaaatg 110  Q
    |||||||||| |||||||||||| ||| || |||||||| ||||||||||    
T  32846234 ctcactttttaattggcttaaatcatattgggtctcacactttggaaatg 32846185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 16318477 - 16318437
Alignment:
Q  131 gtcatacattggtttcatccaacaagagaatgagtgttgaa 171  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  16318477 gtcatacattgattttatccaataagagaatgagtgttgaa 16318437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 16318965 - 16318893
Alignment:
Q  37 ctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaat 109  Q
    ||||||| |||| ||| ||||| | ||||||| | |||||||||||| ||  ||||||||||| |||||||||    
T  16318965 ctcttttcaacactctttccaacaatcactttctaattggcttaaatcatgatgagtctcacactttggaaat 16318893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 6163528 - 6163640
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    ||||||||||| || |||||||| || ||||||||||| |||||||||||| |||||| |||||||| ||||||||||  | |||||||||||| || ||    
T  6163528 cactctcttttcaatattctctctaacactcactttttaattggcttaaatcatagtgcgtctcacactttggaaatgagttctacttaaagtggtgggt 6163627  T
Q  133 catacattggttt 145  Q
    || ||||||||||    
T  6163628 caaacattggttt 6163640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 26170912 - 26171043
Alignment:
Q  45 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 144  Q
    |||| ||||||||| ||||||||||| | || |||||||||| ||| || ||||| ||||||||||| | | |||||||||| || ||||||||||| ||    
T  26170912 aacactctctccaacactcactttttaactgacttaaattatggtgggtttcacactttggaaatgggttccacttaaagtggtgggtcatacattgatt 26171011  T
Q  145 tcatccaacaagagaatgagtgttgaagagag 176  Q
    | |||||| |||| ||||||||||||| ||||    
T  26171012 ttatccaataagaaaatgagtgttgaaaagag 26171043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 25326985 - 25326859
Alignment:
Q  50 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatc 149  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||| || |  || ||||||||||| | | |||||||||| || ||||||||||| ||| |||    
T  25326985 tctctccaacactcactttttaattagcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacattgattttatc 25326886  T
Q  150 caacaagagaatgagtgttgaagagag 176  Q
    ||| |||| ||||||||||||||||||    
T  25326885 caataagaaaatgagtgttgaagagag 25326859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 26159520 - 26159394
Alignment:
Q  50 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatc 149  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||| || |  || ||||||||||| | | |||||||||| || ||||||||||| ||| |||    
T  26159520 tctctccaacactcactttttaattagcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacattgattttatc 26159421  T
Q  150 caacaagagaatgagtgttgaagagag 176  Q
    ||| |||| ||||||||||||||||||    
T  26159420 caataagaaaatgagtgttgaagagag 26159394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 25010151 - 25010025
Alignment:
Q  45 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 144  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||| ||||||| | | | | ||| |  |  || ||||| |||||    
T  25010151 aacactctctccaacactcatttttttattggcttaaattatagtg-gtctcacactttagaaatgggttccattcaaaatagtaggtaatacaatggtt 25010053  T
Q  145 tcatccaacaagagaatgagtgttgaag 172  Q
    |||||||| |||||||||||||||||||    
T  25010052 tcatccaataagagaatgagtgttgaag 25010025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 181
Target Start/End: Complemental strand, 28274957 - 28274811
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    ||||||||||| |||| |||||  || || |||||| ||||||| |||||| |  ||| ||||||||  |||||||||| | | |||||| |||||| |     
T  28274957 cactctcttttcaacactctcttaaacacccactttattattggtttaaatcaaggtgggtctcacacattggaaatgggttccacttaaggtgatggga 28274858  T
Q  133 catacattggtttcatccaacaagagaatgagtgttgaagagagagtgt 181  Q
    |||||| | ||||||||||| |||||| ||||||||  |||||||||||    
T  28274857 catacactagtttcatccaataagagagtgagtgtt--agagagagtgt 28274811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 18473820 - 18473677
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    ||||||||||| |||| ||||| ||| ||||||||| | |||||||||||| || ||| |||||||| |||| |||||| | | ||||||||||  | ||    
T  18473820 cactctcttttcaacactctcttcaacactcactttctaattggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaagtggcgggt 18473721  T
Q  133 catacattggtttcatccaacaagagaatgagtgttgaagagag 176  Q
    || | |||||||| |  |||  ||| | ||||||||||||||||    
T  18473720 cacatattggtttaagtcaattagaaagtgagtgttgaagagag 18473677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 4817181 - 4817257
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatg 110  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||||||| | |||  ||||||| |||| |||||    
T  4817181 cactctctttttaacattctctccaacactta-ttttttattggcttaaattgtggtggatctcacactttgaaaatg 4817257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 7549730 - 7549637
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttgg-aaatggatactacttaaagtgatgagtcatacattggtttcatccaa 152  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||||| |||||  | | |||||||||| |  |||||||||| |||| ||||||    
T  7549730 actcactttttaattggcttaaattatggtgagtctcacactttggaaaatgtgttccacttaaagtggttggtcatacattagttttatccaa 7549637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 15741860 - 15741965
Alignment:
Q  76 gcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagaga 175  Q
    |||||||| |||| | |||||||| ||||||||||  |   ||||||||||||   |||||||||||||| |||||| |||  ||||||||||||| |||    
T  15741860 gcttaaatcatagcgggtctcacactttggaaatgagtttcacttaaagtgatcgatcatacattggttttatccaataagttaatgagtgttgaaaaga 15741959  T
Q  176 gagtgt 181  Q
    ||||||    
T  15741960 gagtgt 15741965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 18157212 - 18157090
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| ||||||||||| |||||||||||  ||||||| ||||  |  |||| |||||||| ||||||||||  | | ||||||||||     
T  18157212 agcaacactctcttttcaacattctctcaaatactcacttccttattggtttaa--tcaagtgggtctcacactttggaaatgtgttccacttaaagtgg 18157115  T
Q  128 tgagtcatacattggtttcatccaa 152  Q
    || | ||||||||  ||||||||||    
T  18157114 tgggacatacattaatttcatccaa 18157090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 21970282 - 21970431
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| |||||||||   |||||||||||  ||||||| |||||| |   || ||||||||  ||| |||||| | | ||||||||||     
T  21970282 agcaacactctcttttaaacattctcataaatactcacttcattattggtttaaatcaagatgggtctcacacattgaaaatgggttccacttaaagtgg 21970381  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagaga 177  Q
    || | |||||| | ||||||| ||| |||||| ||||||||||| |||||    
T  21970382 tgggacatacactagtttcattcaataagagagtgagtgttgaaaagaga 21970431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 40125857 - 40125967
Alignment:
Q  38 tctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatac 137  Q
    |||||| |||| ||||||||| | ||||||| | |||| |||||||||| ||    |||||| ||||||||||||| | |||||||||| || |||||||    
T  40125857 tcttttcaacactctctccaacattcactttctaattgacttaaattatggt----ctcacactttggaaatggattccacttaaagtggtgggtcatac 40125952  T
Q  138 attggtttcatccaa 152  Q
    ||| |||| ||||||    
T  40125953 attagttttatccaa 40125967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 39150023 - 39150110
Alignment:
Q  40 tttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcaca-ttttggaaatggatactacttaaagtg 126  Q
    ||||||||| | |||| ||||| ||||||||  ||||||||||| |||||| |||||||| ||||||||||| || | ||||||||||    
T  39150023 tttttaacactatctcgaatacacactttttatttggcttaaatcatagtgtgtctcacacttttggaaatgcattccacttaaagtg 39150110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 14340984 - 14341076
Alignment:
Q  87 agtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgt 181  Q
    ||||| |||||||| |||||||||| | | |||||||||| || | |||| ||| ||||||||||| || | ||||||||||  |||||||||||    
T  14340984 agtgaatctcacatattggaaatgggttccacttaaagtggtgggacatatattagtttcatccaataaaaaaatgagtgtt--agagagagtgt 14341076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 33234544 - 33234465
Alignment:
Q  66 ttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggttt 145  Q
    ||||| ||||||||||||||| |||  ||||||| ||| ||||||| |   |||||||||| ||||||||||||| ||||    
T  33234544 tttttaattggcttaaattatggtggatctcacactttagaaatgggtttcacttaaagtggtgagtcatacatttgttt 33234465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 18953272 - 18953313
Alignment:
Q  132 tcatacattggtttcatccaacaagagaatgagtgttgaaga 173  Q
    ||||||||||||||||||||| || | |||||||||||||||    
T  18953272 tcatacattggtttcatccaataaaaaaatgagtgttgaaga 18953313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 19101612 - 19101661
Alignment:
Q  34 actctctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    |||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  19101612 actctcttttgaacactctctctaatactcactttcttattggtttaaat 19101661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 44807130 - 44807175
Alignment:
Q  134 atacattggtttcatccaacaagagaatgagtgttgaagagagagt 179  Q
    ||||||||||||| ||| | |||||||||||||||||| |||||||    
T  44807130 atacattggtttcttccgataagagaatgagtgttgaaaagagagt 44807175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 2593042 - 2592970
Alignment:
Q  66 ttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcataca 138  Q
    |||||||||| ||||||| |  ||| |||||||| |||  |||||||| | |||||||||| |||||||||||    
T  2593042 ttttttattgacttaaataaaggtgggtctcacactttaaaaatggattccacttaaagtggtgagtcataca 2592970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 28941839 - 28941887
Alignment:
Q  38 tctttttaacattctctccaatactcacttttttattggcttaaattat 86  Q
    |||||| |||| ||||||||||||||| ||||||||||| | |||||||    
T  28941839 tcttttgaacactctctccaatactcatttttttattggatgaaattat 28941887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 31602130 - 31602206
Alignment:
Q  92 gtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgtt 168  Q
    |||||||| ||||||||||||| | || ||||||| |||| |  ||||  ||||||||||| |||||| ||||||||    
T  31602130 gtctcacactttggaaatggatcccacctaaagtggtgagacccacatgtgtttcatccaataagagagtgagtgtt 31602206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 10798317 - 10798418
Alignment:
Q  64 acttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatga 163  Q
    ||||||| ||||||||||||||| ||| |||||| | ||||||||||  | | |||||||||| || ||||||||||||||| |||||| | ||||||||    
T  10798317 actttttaattggcttaaattattgtgggtctcatactttggaaatgagttccacttaaagtggtgggtcatacattggttttatccaatacgagaatga 10798416  T
Q  164 gt 165  Q
    ||    
T  10798417 gt 10798418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 11832146 - 11832261
Alignment:
Q  66 ttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagt 165  Q
    ||||| |||| |||||||||| ||| || || |||||||||||||| | ||||||||| || || || ||| |||||||| ||||||  |||||||||||    
T  11832146 tttttaattgacttaaattatggtgggtttcgcattttggaaatgggttctacttaaattggtgggttatatattggttt-atccaatgagagaatgagt 11832244  T
Q  166 gttgaagagagagtgtc 182  Q
    |||||| ||||||||||    
T  11832245 gttgaaaagagagtgtc 11832261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 214193 - 214063
Alignment:
Q  45 aacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtt 144  Q
    |||| ||||| ||| ||||||||||| ||||  ||||| |||  || |||||||| |||||||| |||  | | |||||||| || |||||| |||||||    
T  214193 aacactctcttcaacactcactttttaattgatttaaaatatgatgggtctcacactttggaaagggactccatttaaagtggtgggtcatatattggtt 214094  T
Q  145 tcatccaacaagagaatgagtgttgaagagag 176  Q
    | |||||| |||||||||||||||||||||||    
T  214093 t-atccaataagagaatgagtgttgaagagag 214063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 7791982 - 7791887
Alignment:
Q  50 tctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggttt 145  Q
    ||||||||| ||||||||| | |||||||||||| | |||| |||||||| ||||||||| ||| | |||||||||| || |||| ||||||||||    
T  7791982 tctctccaacactcactttctaattggcttaaatcacagtgggtctcacactttggaaatagattccacttaaagtggtgggtcacacattggttt 7791887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 22813318 - 22813424
Alignment:
Q  70 ttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaatgagtgttg 169  Q
    |||||||||||||| || |||||||||||| ||| ||||||| | | ||| |||||| || |||||||||||  |||||||||  ||| ||||||||||     
T  22813318 ttattggcttaaatcatggtgagtctcacactttcgaaatgggttccactaaaagtggtgggtcatacattgcattcatccaatgagaaaatgagtgttc 22813417  T
Q  170 aagagag 176  Q
    |||||||    
T  22813418 aagagag 22813424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 34706591 - 34706753
Alignment:
Q  33 cactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagt 132  Q
    ||||||||||| |||| | ||||||| || |||||| | ||| |||||||| || |||  ||||||| ||||||||||| | |  ||||||||| || ||    
T  34706591 cactctcttttgaacactatctccaacacccactttctaatttgcttaaatcatggtggatctcacactttggaaatgggttccgcttaaagtggtgggt 34706690  T
Q  133 catacattggtttcatccaacaagagaatgagtgttgaagagagagtgtccttaacatttctc 195  Q
    || |||||| ||| | | ||  ||| | ||||||||||| |||||||||| ||| ||||||||    
T  34706691 cacacattgatttaagcaaattagaaagtgagtgttgaaaagagagtgtctttagcatttctc 34706753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 53655419 - 53655528
Alignment:
Q  36 tctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcat 135  Q
    |||||||| |||| ||||||||| ||||||||| | |||||||||||| |||||   ||||||| |||| |||||| | | ||||||| || || ||||     
T  53655419 tctcttttcaacactctctccaacactcactttctaattggcttaaatcatagttgatctcacactttgaaaatgggttccacttaaaatggtgggtcac 53655518  T
Q  136 acattggttt 145  Q
    ||||||||||    
T  53655519 acattggttt 53655528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 8475298 - 8475190
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    ||||||||| ||||| | | ||||||  ||| |||||||| ||||||||||| | | | |||||| | |||| |||||||| ||||||||||| ||||||    
T  8475298 actcactttcttattagttcaaattaaggtgggtctcacactttggaaatgggttccatttaaagcggtgagacatacattagtttcatccaataagaga 8475199  T
Q  160 atgagtgtt 168  Q
     ||| ||||    
T  8475198 gtgaatgtt 8475190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 20791471 - 20791416
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    |||| ||||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  20791471 agcaccactctcttttgaacactctctctaatactcactttcttattggtttaaat 20791416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 44225873 - 44225980
Alignment:
Q  62 tcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagagaat 161  Q
    ||||||| ||||||| |||||| |   || ||||||||  ||| |||||| | | ||||||||||||| | |||||| | ||||||||||| |||||| |    
T  44225873 tcactttattattggtttaaataaagctgggtctcacacattgaaaatgggttccacttaaagtgatgggacatacactagtttcatccaataagagagt 44225972  T
Q  162 gagtgttg 169  Q
    ||||||||    
T  44225973 gagtgttg 44225980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 52123961 - 52124016
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    |||| ||||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  52123961 agcaacactctcttttgaacactctctctaatactcactttcttattggtttaaat 52124016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 52223544 - 52223409
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    ||||||||| | |||| |||||||  | ||| |||||||| ||||||||||| |  ||||||||||| || |||| |||||||||| |  |||  | | |    
T  52223544 actcactttctaattgacttaaatcgtggtgggtctcacactttggaaatgggttatacttaaagtggtgtgtcacacattggtttaagtcaattaaaaa 52223445  T
Q  160 atgagtgttgaagagagagtgtccttaacatttctc 195  Q
     ||||||||||| | ||| ||||| |||||||||||    
T  52223444 gtgagtgttgaaaaaagaatgtccctaacatttctc 52223409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 21175635 - 21175582
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggat 113  Q
    ||||||||| ||||||||||||||||| ||| |||||| | |||| ||||||||    
T  21175635 actcactttattattggcttaaattatggtgggtctcatactttgaaaatggat 21175582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 38169029 - 38169142
Alignment:
Q  60 actcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaacaagaga 159  Q
    |||||||||||||||||||||||| || ||   ||||| | |||| |||||| |   ||||||||||| |  ||||||||| | || |||||| || | |    
T  38169029 actcacttttttattggcttaaatcatggtagatctcaaactttgtaaatggttttcacttaaagtgacggatcatacattagatttatccaataaaaaa 38169128  T
Q  160 atgagtgttgaaga 173  Q
    ||||||||||||||    
T  38169129 atgagtgttgaaga 38169142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 44844151 - 44844102
Alignment:
Q  34 actctctttttaacattctctccaatactcacttttttattggcttaaat 83  Q
    ||||||||||| ||| |||||| || ||||||||||||||||| ||||||    
T  44844151 actctctttttgacactctctctaacactcacttttttattggattaaat 44844102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 43657927 - 43657830
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| |||||||||||||||| | | ||||| ||||||||| | ||||||||||||   ||||||||||||  |||  |||||| | | |||||||||||    
T  43657927 agcaacactctctttttaacactgtttccaacactcactttctaattggcttaaat--cagtgagtctcaccctttaaaaatgggttccacttaaagtga 43657830  T

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Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 297012 - 296861
Alignment:
Q  28 agcagcactctctttttaacattctctccaatactcacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtga 127  Q
    |||| ||||||||||| |||| |||||| || ||||||||  ||||||| |||||| |  ||| ||||||||  |||||||||| | | |||||| |||     
T  297012 agcaacactctcttttcaacactctctcaaacactcacttcattattggtttaaatgaaggtgggtctcacacattggaaatgggttccacttaaggtgg 296913  T
Q  128 tgagtcatacattggtttcatccaacaagagaatgagtgttgaagagagagtgt 181  Q
    || | |||||| | ||||||||||| |||||| ||||||||  |||||||||||    
T  296912 tgggacatacactagtttcatccaataagagagtgagtgtt--agagagagtgt 296861  T

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Target: scaffold0238 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 15330 - 15241
Alignment:
Q  63 cacttttttattggcttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaa 152  Q
    ||||||||||||||||||||| || ||| |||| |||||||| ||||| |||| | ||||| |  || ||||||||||||||| ||||||    
T  15330 cacttttttattggcttaaatcattgtgggtcttacattttgaaaatgaataccatttaaactagtgggtcatacattggttttatccaa 15241  T

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Target: scaffold0886 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 3371 - 3297
Alignment:
Q  78 ttaaattatagtgagtctcacattttggaaatggatactacttaaagtgatgagtcatacattggtttcatccaa 152  Q
    |||||| || ||| |||| ||| |||| |||||||||| | ||||||||  ||||||||||||||||||||||||    
T  3371 ttaaatcattgtgggtcttacactttgaaaatggataccatttaaagtggagagtcatacattggtttcatccaa 3297  T

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