View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2254_low_6 (Length: 251)
Name: NF2254_low_6
Description: NF2254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2254_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 55004367 - 55004598
Alignment:
| Q |
5 |
gcatggtccttgcttgataactttgagtggatatatggatgcacagtaagatatggattccaccatgtggattatgctacactgaagagaactccaaggt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55004367 |
gcatggtccttgcttgataactttgagtggatatatggatacacagtaagatatggattccaccatgtggattatgctacactgaagagaactccaaggt |
55004466 |
T |
|
| Q |
105 |
tatcagcaagctggtacaagcaattcattgtgaattataaacaaactgaattcactggggtacaaaaactggtgcaaagtacatgagacaaattcaatgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55004467 |
tatcagcaagctggtacaagcaattcattgtgaattataaacaaactgaattcactggggtacaaaaactggtgcaaagtacatgagacaaattcaatgc |
55004566 |
T |
|
| Q |
205 |
aaagccttctcagctatatatgtaaaagtttt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
55004567 |
aaagccttctcagctatatatgtaaaagtttt |
55004598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 54994463 - 54994589
Alignment:
| Q |
8 |
tggtccttgcttgataactttgagtggatatatggatgcacagtaagatatggattccaccatgtggattatgctacactgaagagaactccaaggttat |
107 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| | ||||| |||| |||| | ||||||| |||| |||||||| |||||||||||||| || | |
|
|
| T |
54994463 |
tggtccttgcttgacaactttgagtggctatatggttttacagtgagatttggactttaccatgttgattttgctacacagaagagaactccaaaattgt |
54994562 |
T |
|
| Q |
108 |
cagcaagctggtacaagcaattcattg |
134 |
Q |
| |
|
|||| || |||||||| || ||||||| |
|
|
| T |
54994563 |
cagctagttggtacaaacatttcattg |
54994589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 7922787 - 7922914
Alignment:
| Q |
5 |
gcatggtccttgcttgataactttgagtggatatatggatgcacagtaagatatggattccaccatgtggattatgctacactgaagagaactccaaggt |
104 |
Q |
| |
|
|||||||||||||| || ||||| |||||| || | |||| |||||||||| |||| |||||||||| |||||||| ||||| |||||||||||||| | |
|
|
| T |
7922787 |
gcatggtccttgctcgacaacttcgagtggttacaaggatatacagtaagatttggactccaccatgttgattatgcaacactcaagagaactccaagat |
7922886 |
T |
|
| Q |
105 |
tatcagcaagctggtacaagcaattcat |
132 |
Q |
| |
|
||||||||| ||||||||| ||||||| |
|
|
| T |
7922887 |
tatcagcaaattggtacaaggaattcat |
7922914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University