View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2254_low_8 (Length: 234)
Name: NF2254_low_8
Description: NF2254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2254_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 37927156 - 37927396
Alignment:
| Q |
1 |
agaacttaaagagattaagtaaaaagaaat--------acgtaatcaagtttactttcatcaacaagtcaagataaaaatacaatatgtatacagcccaa |
92 |
Q |
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| T |
37927156 |
agaatttaaagagattaagtaaaaagaaatgctgaaaaacgtaatcaagtttactttcatcaaagagtcaagataaaaatacaatatgtatacagcccaa |
37927255 |
T |
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| Q |
93 |
agcattgaaaagttctttgnnnnnnnnncattgaaaagttcttcacatcaatgtttgaactttgaatttctctataaaaattgtatttttcccccacctc |
192 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37927256 |
agcattgaaaagttcttt-aaaaaaaaacattgaaaagttcttcacatcaatgtttgaactttgaatttctctataaaaattgtatttttcccccacctc |
37927354 |
T |
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| Q |
193 |
aactccatttacaagcttcaaagttatatttatgtatagagt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
37927355 |
aactccatttacaagcttcaaagttatatttatgtatagagt |
37927396 |
T |
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