View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2255_low_2 (Length: 380)
Name: NF2255_low_2
Description: NF2255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2255_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 32055844 - 32055600
Alignment:
| Q |
1 |
tgggtattgttattgatggtccaattcgattgaactgtttgcacccc-tcaagaacgggtctggttattgatagtcacacaaaatataaaggcattactg |
99 |
Q |
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| T |
32055844 |
tgggtattgttattgatggtccaattcggttgaactgtttgcaccccctcaagaacggatctggttattgatagtcgcacaaaatatagaggcattactg |
32055745 |
T |
|
| Q |
100 |
acctgtagagggtttaggcactgaaataatatttcacgcaaggagatgtggctttgatatgcttcctattttatttagttttcannnnnnnnnnncctaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32055744 |
acctgtagagggtttaggcactgaaataatatttcacgcaaggagatgtggctttgatatgcttcctattttatttagttttcattttttttt---ctaa |
32055648 |
T |
|
| Q |
200 |
accaatccaataattgagcagtacacacttatgagtgaaaatagaaaa |
247 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32055647 |
tccaatccaataattgagcagtacacacttatgagtgaaaatagaaaa |
32055600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 32055575 - 32055496
Alignment:
| Q |
298 |
tggtgctataaggacaatttaaatttaccatgaaggaaataaacaatttcgccgcaactaatggatcgagataaattcac |
377 |
Q |
| |
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| T |
32055575 |
tggtgctataaggacaatttaaatttaccatgaaggaaataaacaatttcgccgcaactaatggatcgagataaattcac |
32055496 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 20996597 - 20996565
Alignment:
| Q |
252 |
ttaaatgaagtagaaaaatgacaatttaattaa |
284 |
Q |
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| T |
20996597 |
ttaaatgaagtagaaaaatgacaatttaattaa |
20996565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 32264239 - 32264195
Alignment:
| Q |
301 |
tgctataaggacaatttaaatttaccatgaaggaaataaacaatt |
345 |
Q |
| |
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||||| |||||||||||| |||||||||||||||| | ||||||| |
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|
| T |
32264239 |
tgctaaaaggacaatttagatttaccatgaaggaagtgaacaatt |
32264195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 8086464 - 8086348
Alignment:
| Q |
64 |
ttattgatagtcacacaaaatataaaggcattactgacctgtagagggtttaggcactgaaataatatttcacgcaaggagatgtggctttgatatgctt |
163 |
Q |
| |
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|||||||| | ||||||||||||||||| | | ||||| |||||||| ||||||| || ||||||||| || ||||||||||||| | |||||||||| |
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| T |
8086464 |
ttattgatgggcacacaaaatataaaggaaatgctgacatgtagaggatttaggcgttgtaataatattccaagcaaggagatgtgacgttgatatgctc |
8086365 |
T |
|
| Q |
164 |
cctattttatttagttt |
180 |
Q |
| |
|
|||| ||| |||||||| |
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|
| T |
8086364 |
cctaatttttttagttt |
8086348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 30332866 - 30332911
Alignment:
| Q |
202 |
caatccaataattgagcagtacacacttatgagtgaaaatagaaaa |
247 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| |||| |
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|
| T |
30332866 |
caatccaataattgagcattgcacacttatgagtgaaaatataaaa |
30332911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 30332735 - 30332820
Alignment:
| Q |
74 |
tcacacaaaatataaaggcattactgacctgtagagggtttaggcactgaaataatatttcacgcaaggagatgtggctttgatat |
159 |
Q |
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| T |
30332735 |
tcacacaaaataaaaaggcaatgctcacatgtaaaggatttagacactctaatgatatttcaagcaacgagatatggctttgatat |
30332820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 31311632 - 31311665
Alignment:
| Q |
304 |
tataaggacaatttaaatttaccatgaaggaaat |
337 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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|
| T |
31311632 |
tataaggacaatttaaatttaccatgaagaaaat |
31311665 |
T |
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