View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2255_low_5 (Length: 236)
Name: NF2255_low_5
Description: NF2255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2255_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 49011190 - 49011406
Alignment:
| Q |
1 |
ataaattttaagatgtatgcatcttaccatactgatttaacatctaaccattatgaaagagaaagtgaggtgataaagctaagtacaatccttgttcaat |
100 |
Q |
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| T |
49011190 |
ataaattttaagatgtatgcatcttaccatactgatttaacatctaaccattatgaaagagaaagtgaggtgataaagctaagtacaatccttgttcaat |
49011289 |
T |
|
| Q |
101 |
gcccacaaaagcagctaaccacagacagaag-aacgaagccatatatcccacataaaatgtgacatattctagctacttcatagaatttgcattattatt |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49011290 |
tcccacaaaagcagctaaccacagacagaagaaacgaagccatatatcccacataaaatttgacatattctagctacttcatagaatttgcattattatt |
49011389 |
T |
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| Q |
200 |
aatatcatcaacacgta |
216 |
Q |
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| T |
49011390 |
aatatcatcaacacgta |
49011406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 38183840 - 38184052
Alignment:
| Q |
5 |
attttaagatgtatgcatcttaccatactgatttaacatctaaccattatgaaagagaaagtgaggtgataaagcta--agtacaatccttgttcaatgc |
102 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
38183840 |
attttaagatgtatgcatctcaccatattgatttaacatctaactatcatgaaagagaaagtgaggttataaagctacaagtacaatccttgttcaatgc |
38183939 |
T |
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| Q |
103 |
ccacaaaagcagctaaccacagacagaagaacgaagccatatatcccacataaaatgtgacatattctagctacttcatagaatttgc---attattatt |
199 |
Q |
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||||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
38183940 |
ccacaaaagcatctaaccacagacagaagaaagaaacaatatatcccacataaaatgtgacacattctagctacttcatagaatttgcattattattatt |
38184039 |
T |
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| Q |
200 |
aatatcatcaaca |
212 |
Q |
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| T |
38184040 |
aatatcatcaaca |
38184052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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