View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2256_high_1 (Length: 434)
Name: NF2256_high_1
Description: NF2256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2256_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Complemental strand, 43139621 - 43139198
Alignment:
| Q |
12 |
atgaatattagagtgtgttagaaagatagtcttcttcacattttttatttcatacaatccacacagcacagtacagttatcacacacatacataaatata |
111 |
Q |
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| T |
43139621 |
atgaatattagagtgtgttagaaagatagtcttcttcacattttttatttcatacaatccacacagcacaatacagttatcacacacatacataaatata |
43139522 |
T |
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| Q |
112 |
tatatcaaatttcattaagtattttatttaattgtttttaaccttggacatttcatattatattacaataactatagggaaatttt-------------- |
197 |
Q |
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| T |
43139521 |
tatatcaaatttcattaagtattttctttaattgtttttaaccttggacatttcatattatattacaataactatagggaaattttccaaatcttttttt |
43139422 |
T |
|
| Q |
198 |
acaaatcaaggatataattaatcttaaaatttaagtgttactttgtagtaaaggttctatacttatacttatcatttggtccttgcagattta--gaagt |
295 |
Q |
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| T |
43139421 |
acaaatcaaggatataattaatcttaaaatttaagtggtaatttgtagtaaaggttctatacttatacttatcatttggtccttgcagatttatagaagt |
43139322 |
T |
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| Q |
296 |
tgcctctgcccggcttattgtatcatattagctcaccatattataatgaattttaagtgttattcatgagttggcttatcccaagctatactaattttac |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43139321 |
tgcctctgcccggcttattgtatcatattagctcaccatattataatgaattttaagtgttattcatgagttggcttatcccaagctatactaattttac |
43139222 |
T |
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| Q |
396 |
ttcatgcagtgacactgaccaata |
419 |
Q |
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| T |
43139221 |
ttcatgcagtgacactgaccaata |
43139198 |
T |
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