View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2256_low_2 (Length: 442)
Name: NF2256_low_2
Description: NF2256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2256_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 24 - 436
Target Start/End: Complemental strand, 4792832 - 4792420
Alignment:
| Q |
24 |
aacattgaaaggggttaatgtttatttggcagggttaatgcttatttgacatgccacaacgtgaaagtttgggagactatgttgaatgagtttggacttc |
123 |
Q |
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| T |
4792832 |
aacattgaaaggggttaatgcttatttggcagggttaatgcttatatgacatgccacaacgtgaaagtttgggaggctatgttgaatgagtttggacttc |
4792733 |
T |
|
| Q |
124 |
cactaggacttcttccactcgccgatgtaatcgaagttagttttgttagaaacaccggttacatgcgtatctagcagaagaagaaagttgaacacacctt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
4792732 |
cactaggacttcttccactcgccgatgtaatcgaagttagttttgttagaaacaccgattacatgcgtatcttgcagaagaagaaagttgaacacaactt |
4792633 |
T |
|
| Q |
224 |
taaattgattggcaagttggtgagttatgatactgaaatcaatggttacatgttgaaaaagaaaattaagaagctcaaaggggtgaaagccaaagaactc |
323 |
Q |
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| T |
4792632 |
taaattgattggcaagttggtgagttatgatactgaaatcaatggttacatgttgaaaaagaaaattaagaagctcaaaggggtgaaagccaaagaactc |
4792533 |
T |
|
| Q |
324 |
atgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttcaagagtttagctggtatcaccaaaactttcccagttg |
423 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4792532 |
atgctttggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttcaagagtttagctggtatcaccaaaactttcccagttg |
4792433 |
T |
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| Q |
424 |
aggcctttgctac |
436 |
Q |
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|||| |||||||| |
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| T |
4792432 |
aggcttttgctac |
4792420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 434
Target Start/End: Complemental strand, 39347815 - 39347624
Alignment:
| Q |
243 |
gtgagttatgatactgaaatcaatggttacatgttgaaaaagaaaattaagaagctcaaaggggtgaaagccaaagaactcatgcttcggcctcctgtca |
342 |
Q |
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| T |
39347815 |
gtgagctatgatactgagataacaggttacatttcaaagaagaagattaagaaacttaaaggcgtgaaagctaaggaactcatgttatggccacctgtta |
39347716 |
T |
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| Q |
343 |
atgaaattaatatagatgaaacactcaatggaaagattcacttcaagagtttagctggtatcaccaaaactttcccagttgaggcctttgct |
434 |
Q |
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| T |
39347715 |
atgagattactgttgatgaacaaccaactgggaagattcatttcaagagtcttgctggtatcactaagactttccctgttgaagcttttgct |
39347624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 434
Target Start/End: Complemental strand, 39345589 - 39345437
Alignment:
| Q |
282 |
aagaaaattaagaagctcaaaggggtgaaagccaaagaactcatgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattc |
381 |
Q |
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||||| ||||||| ||| ||||| || || | |||||||||||| | ||||||||| ||||||| |||| | | |||||| || | |||||| |||| |
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| T |
39345589 |
aagaatattaagatgcttaaaggtgttaatgttaaagaactcatgttacggcctcctatcaatgagattattgttgatgaagaaccaactggaaaaattc |
39345490 |
T |
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| Q |
382 |
acttcaagagtttagctggtatcaccaaaactttcccagttgaggcctttgct |
434 |
Q |
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| |||||||||| | |||||||||||| |||||||| ||||| || |||||| |
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| T |
39345489 |
atttcaagagttatggtggtatcaccaagactttccctgttgaagcttttgct |
39345437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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