View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2257_high_1 (Length: 238)

Name: NF2257_high_1
Description: NF2257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2257_high_1
NF2257_high_1
[»] chr5 (2 HSPs)
chr5 (1-221)||(27640377-27640597)
chr5 (102-210)||(40767164-40767271)
[»] chr3 (2 HSPs)
chr3 (99-221)||(8029221-8029343)
chr3 (168-223)||(40362023-40362078)
[»] chr6 (3 HSPs)
chr6 (100-221)||(33794478-33794599)
chr6 (100-221)||(7385351-7385474)
chr6 (156-218)||(27176998-27177060)
[»] chr7 (4 HSPs)
chr7 (144-221)||(21836040-21836117)
chr7 (103-203)||(24604687-24604787)
chr7 (102-216)||(23961654-23961768)
chr7 (106-216)||(24972902-24973012)
[»] chr2 (4 HSPs)
chr2 (156-215)||(29923903-29923962)
chr2 (146-221)||(35978834-35978909)
chr2 (156-216)||(5357609-5357669)
chr2 (107-223)||(29927702-29927817)
[»] chr8 (1 HSPs)
chr8 (156-216)||(31645145-31645205)
[»] chr4 (1 HSPs)
chr4 (156-207)||(43148897-43148948)
[»] chr1 (1 HSPs)
chr1 (156-214)||(22023172-22023231)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27640377 - 27640597
Alignment:
Q  1 ttatggaactttgcggtaaaaagctttgtaggaattggtcccacctcgtagtaccactatactttctattgatgtgatatatactaaagcacctaaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27640377 ttatggaactttgcggtaaaaagctttgtaggaattggtcccacctcgtagtaccactatactttctattgatgtgatatatactaatgcacctaaaaca 27640476  T
Q  101 tgaagattgttgttcccacatcaaagagtgctaagaaatatcgggaaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgacgg 200  Q
    ||||||| ||||||||||||| ||| |||||||| |||||   | |||||||||||||||||||||||| | |||| ||||||||||||||||| |||||    
T  27640477 tgaagatcgttgttcccacattaaaaagtgctaaaaaatactcgaaaaatatcattataacctcatctgtaattaactgtcgatagtttttaacagacgg 27640576  T
Q  201 cagttaactgtcgatgaaatt 221  Q
    |||||||||| || |||||||    
T  27640577 cagttaactgccggtgaaatt 27640597  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 40767271 - 40767164
Alignment:
Q  102 gaagattgttgttcccacatcaaagagtgctaagaaatatcgggaaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgacggc 201  Q
    |||||||| |||||||||||||||| |||||| |||| | | | |||||| || ||||||||| |  | |||| | ||||||| | ||||||||||||||    
T  40767271 gaagattgatgttcccacatcaaagggtgctatgaaacaccagaaaaataccaatataacctctttggaagtt-actgtcgatgggttttaaccgacggc 40767173  T
Q  202 agttaactg 210  Q
    | |||||||    
T  40767172 aattaactg 40767164  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 8029343 - 8029221
Alignment:
Q  99 catgaagattgttgttcccacatcaaagagtgctaagaaatatcgggaaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgac 198  Q
    |||||||||||||||||||||||||||| ||||||| ||| | ||| |||||| || |||||||||||| ||| |||| || ||||   |||||||||||    
T  8029343 catgaagattgttgttcccacatcaaagggtgctaaaaaacaccggaaaaataccaatataacctcatcggcaattaactgccgatgagttttaaccgac 8029244  T
Q  199 ggcagttaactgtcgatgaaatt 221  Q
    | |||||||||| ||||| ||||    
T  8029243 gacagttaactgccgatggaatt 8029221  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 40362023 - 40362078
Alignment:
Q  168 tgcagttaattgtcgatagtttttaaccgacggcagttaactgtcgatgaaatttg 223  Q
    ||||||||| ||||||| | ||||||||||||| |||||||| || ||||||||||    
T  40362023 tgcagttaactgtcgatggattttaaccgacggtagttaactatcaatgaaatttg 40362078  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 33794478 - 33794599
Alignment:
Q  100 atgaagattgttgttcccacatcaaagagtgctaagaaatatcgggaaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgacg 199  Q
    |||||||||||||||||||||||||||  ||||| |||| ||| ||||||||| | ||||||||||||  ||||||| |||||||  ||||||| ||  |    
T  33794478 atgaagattgttgttcccacatcaaaggatgctaggaaacatcaggaaaatattaatataacctcatcatcagttaactgtcgatgatttttaatcggtg 33794577  T
Q  200 gcagttaactgtcgatgaaatt 221  Q
    |||||||||||  |||||||||    
T  33794578 gcagttaactgctgatgaaatt 33794599  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 7385474 - 7385351
Alignment:
Q  100 atgaagattgttgttcccacatcaaagagtgctaagaaatatcgggaaaatatcatta--taacctcatctgcagttaattgtcgatagtttttaaccga 197  Q
    ||||||||||||||||||||||||||| |||||| |||||| |  |||||||| | ||  |||| || || |||||||| ||  ||| | |||||||||     
T  7385474 atgaagattgttgttcccacatcaaagggtgctaggaaataccatgaaaatattaatatttaacttcttcggcagttaactgatgatgggttttaaccgg 7385375  T
Q  198 cggcagttaactgtcgatgaaatt 221  Q
    |||||||||||| |||||| ||||    
T  7385374 cggcagttaactatcgatgtaatt 7385351  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 27176998 - 27177060
Alignment:
Q  156 tataacctcatctgcagttaattgtcgatagtttttaaccgacggcagttaactgtcgatgaa 218  Q
    |||||||||||| |||||||| | |||||   |||||| || |||||||||||||||||||||    
T  27176998 tataacctcatcggcagttaactatcgatgaattttaatcggcggcagttaactgtcgatgaa 27177060  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 21836117 - 21836040
Alignment:
Q  144 ggaaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgacggcagttaactgtcgatgaaatt 221  Q
    |||||||| || |||||||| ||| |||||||| ||| ||| |||||||||||||| |||||||||||||||||||||    
T  21836117 ggaaaataccaatataaccttatcggcagttaactgttgatggtttttaaccgacgacagttaactgtcgatgaaatt 21836040  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 24604787 - 24604687
Alignment:
Q  103 aagattgttgttcccacatcaaagagtgctaagaaatatcgggaaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgacggca 202  Q
    |||||||||||||| |  |||||| | |||| |||| | | |||||||| || ||||||||||||  ||||||| |||| || ||||||||||| |||||    
T  24604787 aagattgttgttcctatgtcaaagggagctaggaaacaccaggaaaataccaatataacctcatcgacagttaactgtcaatggtttttaaccggcggca 24604688  T
Q  203 g 203  Q
    |    
T  24604687 g 24604687  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 23961768 - 23961654
Alignment:
Q  102 gaagattgttgttcccacatcaaagagtgctaagaaatatcgggaaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgacggc 201  Q
    |||||||||||||||||| | |||| ||| ||  |||||||  ||||||||||  ||||| || ||  ||||||| |||| || | |||||||||  ||     
T  23961768 gaagattgttgttcccacgttaaagggtggtagaaaatatcacgaaaatatcaacataacatcttcgacagttaactgtcaatggattttaaccggtggt 23961669  T
Q  202 agttaactgtcgatg 216  Q
    |||||||||||||||    
T  23961668 agttaactgtcgatg 23961654  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 24972902 - 24973012
Alignment:
Q  106 attgttgttcccacatcaaagagtgctaagaaatatcgggaaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgacggcagtt 205  Q
    ||||||||||||||||||||| |  ||| |||| |||  |||| || || |||||| |||||  ||||||| || |||| | ||||||||| ||| ||||    
T  24972902 attgttgttcccacatcaaaggggtctaggaaacatcacgaaattaccaatataacatcatcgacagttaactgccgatggattttaaccggcggtagtt 24973001  T
Q  206 aactgtcgatg 216  Q
    |||| ||||||    
T  24973002 aactatcgatg 24973012  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 29923962 - 29923903
Alignment:
Q  156 tataacctcatctgcagttaattgtcgatagtttttaaccgacggcagttaactgtcgat 215  Q
    |||||||||||| |||||||||||  ||| | ||||||||| ||||||||||||||||||    
T  29923962 tataacctcatcggcagttaattgctgatggattttaaccggcggcagttaactgtcgat 29923903  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 35978834 - 35978909
Alignment:
Q  146 aaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgacggcagttaactgtcgatgaaatt 221  Q
    ||||||| | |||||||||||| | |||||| | || |  |||||||||||| |||||||||||||||||||||||    
T  35978834 aaaatattaatataacctcatcggtagttaactatcaaaggtttttaaccgatggcagttaactgtcgatgaaatt 35978909  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 5357669 - 5357609
Alignment:
Q  156 tataacctcatctgcagttaattgtcgatagtttttaaccgacggcagttaactgtcgatg 216  Q
    |||||||||||| |||||||| ||||||| |  |||||||| |  ||||||||||||||||    
T  5357669 tataacctcatcggcagttaactgtcgatggaatttaaccggcaacagttaactgtcgatg 5357609  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 29927702 - 29927817
Alignment:
Q  107 ttgttgttcccacatcaaagagtgctaagaaatatcgggaaaatatcattataacctcatctgcagttaattgtcgatagtttttaaccgacggcagtta 206  Q
    ||||||||||||||||||||  || || |||| | |  |||| || || |||||||||||| |||||||| ||  ||| | ||||||||||||  |||||    
T  29927702 ttgttgttcccacatcaaaggttgataggaaacaccacgaaattaccaatataacctcatcggcagttaactgctgatggattttaaccgacgatagtta 29927801  T
Q  207 actgtcgatgaaatttg 223  Q
    |||  ||||||||||||    
T  29927802 act-ccgatgaaatttg 29927817  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 31645145 - 31645205
Alignment:
Q  156 tataacctcatctgcagttaattgtcgatagtttttaaccgacggcagttaactgtcgatg 216  Q
    |||||||||||| ||| |||| || |||| | ||||||||||||||||||||||| |||||    
T  31645145 tataacctcatcggcacttaactgccgatggattttaaccgacggcagttaactgccgatg 31645205  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 43148897 - 43148948
Alignment:
Q  156 tataacctcatctgcagttaattgtcgatagtttttaaccgacggcagttaa 207  Q
    |||||||||||| |||||||||||||||| | ||| ||||||| ||||||||    
T  43148897 tataacctcatcggcagttaattgtcgatggatttcaaccgacagcagttaa 43148948  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 22023172 - 22023231
Alignment:
Q  156 tataacctcatctgcagttaattgtcgatag-tttttaaccgacggcagttaactgtcga 214  Q
    |||||||||||| |||||||| || |||| | ||||||||||||| ||||||||||||||    
T  22023172 tataacctcatcggcagttaactgccgatggatttttaaccgacgacagttaactgtcga 22023231  T

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