View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2257_high_2 (Length: 220)
Name: NF2257_high_2
Description: NF2257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2257_high_2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34754705 - 34754924
Alignment:
| Q |
1 |
cccagacattgaaaagtattagtgctccttctggaatcacatacccgtcgatctcacactcttgagtacattttctcttgactacaggtagtggtgggtg |
100 |
Q |
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| T |
34754705 |
cccagacattgaaaagtattagtgctccttctggaatcacatacccgtcgatctcacactcttgagtacattttctcttgactacaggtagtggtgggtg |
34754804 |
T |
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| Q |
101 |
catgcggaatgcttccttcacgacggctctaatgtaaggaagattctgaacatctgattcatcaactagtctatcttttcccacaacagagtcaatctct |
200 |
Q |
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| T |
34754805 |
catgcggaatgcttccttcacgacggctctaatgtaaggaagattctgaacatctgattcatcaactagtccatcttttcccacaacagagtcaatctct |
34754904 |
T |
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| Q |
201 |
tctcgagccttcttcaatac |
220 |
Q |
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|||||||||||||||||||| |
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| T |
34754905 |
tctcgagccttcttcaatac |
34754924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 34781504 - 34781288
Alignment:
| Q |
1 |
cccagacattgaaaagtattagtgctccttctggaatcacatacccgtcgatctcacactcttgagtacattttctcttgactacaggtagtggtgggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
34781504 |
cccagacattgaaaagtattagtgctccttctggaaccacatacccgtcgatctcacattcttgtgtacattttcttttgactacaggtagtggtgggtg |
34781405 |
T |
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| Q |
101 |
catgcggaatgcttccttcacgacggctctaatgtaaggaagattctgaacatctgattcatcaactagtctatcttttcccacaacagagtcaatctct |
200 |
Q |
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| T |
34781404 |
caagcgaaatgcttcttttacgatggctttaatgtaaggaagattctgaacatctgattcatcaaccagtctatcttttcccacaacagagtcaatctcc |
34781305 |
T |
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| Q |
201 |
tctcgagccttcttcaa |
217 |
Q |
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| T |
34781304 |
tctcgagctttcttcaa |
34781288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 34762695 - 34762909
Alignment:
| Q |
6 |
acattgaaaagtattagtgctccttctggaatcacatacccgtcgatctcacactcttgagtacattttctcttgactacaggtagtggtgggtgcatgc |
105 |
Q |
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|||||||||||||| | ||||| || || |||||||| || | |||||||||||||| || ||||||||||| || || |||||||||||||||| | |
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| T |
34762695 |
acattgaaaagtatcaaagctccctccgggatcacataaccattgatctcacactcttcggtgcattttctcttcaccacgggtagtggtgggtgcaaac |
34762794 |
T |
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| Q |
106 |
ggaatgcttccttcacgacggctctaatgtaaggaagattctgaacatctgattcatcaactagtctatcttttcccacaacagagtcaatctcttctcg |
205 |
Q |
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||||| | |||||||| | ||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34762795 |
ggaatacctccttcaccatggcgcgaatgtatggaagattctgaacatctgattcgtcaactagtctatcttttcccacaacagagtcaatctcttcttg |
34762894 |
T |
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| Q |
206 |
agccttcttcaatac |
220 |
Q |
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|| |||||| |||| |
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| T |
34762895 |
tgctttcttccatac |
34762909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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