View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2257_low_1 (Length: 397)
Name: NF2257_low_1
Description: NF2257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2257_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 54074630 - 54074259
Alignment:
| Q |
8 |
cgagagagatgaagagaaaatgcagcaaataaaagaatagaaagtaatgaaagaaggagggttgttcgtggttttcgtcgcatggtttcccaaggactac |
107 |
Q |
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| T |
54074630 |
cgagagagatgaagagaaaatgcagcaaataaaagaatagaaagtaatgaaagaaggagggttgttcgtggttttcgtcgcatggtttcccaaggactac |
54074531 |
T |
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| Q |
108 |
taatgaatgtttttgttgaattgttaatggaaatattggaatctgatggtgaagaaggtttcatattcatatgttctatatgagtgaaaactgaaaagtg |
207 |
Q |
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| T |
54074530 |
taatgaatgttgttgttgaattgttaatggaaatattggaatctgatggtgaagaaggtttcatattcatattttctatatgagtgaaaagt----ag-- |
54074437 |
T |
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| Q |
208 |
tgatgaaatttgttacagatagatagatagataga--------------gaggtgaaatcagcactcgtttttgagttttattcataaataggaatggat |
293 |
Q |
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| T |
54074436 |
----------tgttacagatagatagatagatagagagggggatggtgtgaggtgaaatcagcactcg-ttttgagttttattcatagataggaatgaat |
54074348 |
T |
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| Q |
294 |
tgggaatatgaaagatatagacactactcac---ataataataattgtagaatgttttatgttattaggtaatgatttgattgtgattg |
379 |
Q |
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| T |
54074347 |
tgggaatatgaaagatatagacactactcacataataataataattgtagaatgttttatgttattaggtaatgatttgattgtgattg |
54074259 |
T |
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