View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2257_low_4 (Length: 236)
Name: NF2257_low_4
Description: NF2257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2257_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 31127817 - 31127601
Alignment:
| Q |
5 |
gcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatccatcccaataa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127817 |
gcaaccacccttttcatctgcaagaacgccatttcctttcctaaacacacccttggcccagcctgaaaaaccgcataactataaggatccatcccaataa |
31127718 |
T |
|
| Q |
105 |
agctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatat |
204 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127717 |
agctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatat |
31127618 |
T |
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| Q |
205 |
atgatatgtcaccctcc |
221 |
Q |
| |
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||||||||||||||||| |
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| T |
31127617 |
atgatatgtcaccctcc |
31127601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 31078499 - 31078294
Alignment:
| Q |
5 |
gcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatccatcccaataa |
104 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31078499 |
gcaaccaccctcttcatctgcaagaacgccatttcctttcctaaacacaccctcggcccagcttgaaaaaccgcataactataaggatccatcccaataa |
31078400 |
T |
|
| Q |
105 |
agctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatat |
204 |
Q |
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| |||||||| ||||| ||| |||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
31078399 |
aactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctccgaccttcccatagcatatat |
31078300 |
T |
|
| Q |
205 |
atgata |
210 |
Q |
| |
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|||||| |
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| T |
31078299 |
atgata |
31078294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 31132504 - 31132320
Alignment:
| Q |
26 |
aagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaa |
125 |
Q |
| |
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|||||||||||||| || || ||||||||||| |||||||| ||||||| || |||| |||||||||||||||||| ||||||||| |||||||| ||| |
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| T |
31132504 |
aagaacgccatttctttccctaaacacaccctcggcccagcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcag |
31132405 |
T |
|
| Q |
126 |
cttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgata |
210 |
Q |
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|| | |||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |||||| |||||| |
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| T |
31132404 |
ctcgactcaaccacctctcaggtcaaaactcagcccaatcggatccccatattttctcagaccttcccataacatatacatgata |
31132320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 38643038 - 38642947
Alignment:
| Q |
2 |
ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc |
93 |
Q |
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|||||||| | ||||||||| |||| || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || ||||||| |
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| T |
38643038 |
ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc |
38642947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 38655946 - 38655855
Alignment:
| Q |
2 |
ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc |
93 |
Q |
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|||||||| | ||||||||| |||| || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || ||||||| |
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| T |
38655946 |
ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc |
38655855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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