View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_high_10 (Length: 333)
Name: NF2258_1D_high_10
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 13230363 - 13230506
Alignment:
| Q |
164 |
gacatattagacactaaatattaaatttggacatctttaacttttaatttcatcttgttctattattcattccttaatttt-aaagtagctatttgaggt |
262 |
Q |
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| T |
13230363 |
gacatattagacactaaatattaaatttggacatctttaacttttaatttcatcttgttctattattcattccttaattttaaaactagctatttacggt |
13230462 |
T |
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| Q |
263 |
aattatctattcatggatgctgaaattaaagaagtcaaaaagagaatgg |
311 |
Q |
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| T |
13230463 |
aattatctattcatggatgctg-----aaagaagtcaaaaagagaatgg |
13230506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 13230217 - 13230310
Alignment:
| Q |
16 |
ttatacttgtacgaagttaaaaattagaaatcatcattttatgtttgttgtgactgaaaacggacgagataatttgtggcaaaacattctgctg |
109 |
Q |
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| T |
13230217 |
ttataattgtacgaagttaaaaattagaaatgatcattttatgttggttgtgactgaaaacggacgagataatttgttccaaaacattctgctg |
13230310 |
T |
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