View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2258_1D_high_21 (Length: 223)

Name: NF2258_1D_high_21
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2258_1D_high_21
NF2258_1D_high_21
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-214)||(73506-73719)
[»] chr1 (6 HSPs)
chr1 (1-66)||(39323471-39323536)
chr1 (7-64)||(21631209-21631266)
chr1 (10-66)||(11803334-11803390)
chr1 (2-66)||(14331905-14331969)
chr1 (23-63)||(32268098-32268138)
chr1 (11-63)||(39421080-39421132)
[»] chr2 (1 HSPs)
chr2 (1-63)||(2958449-2958511)
[»] chr7 (6 HSPs)
chr7 (9-63)||(33901324-33901378)
chr7 (11-65)||(33474416-33474470)
chr7 (2-39)||(34111836-34111873)
chr7 (7-65)||(1907567-1907625)
chr7 (12-66)||(36856623-36856677)
chr7 (3-47)||(3408260-3408304)
[»] chr6 (3 HSPs)
chr6 (1-66)||(1947472-1947537)
chr6 (25-64)||(16441768-16441807)
chr6 (1-39)||(28542023-28542061)
[»] chr3 (5 HSPs)
chr3 (10-66)||(35502022-35502078)
chr3 (1-63)||(32385585-32385647)
chr3 (11-66)||(41998959-41999014)
chr3 (11-57)||(15502622-15502668)
chr3 (1-66)||(21195256-21195321)
[»] chr4 (4 HSPs)
chr4 (1-63)||(31463273-31463335)
chr4 (1-66)||(51581433-51581498)
chr4 (2-63)||(55465442-55465503)
chr4 (9-39)||(56268992-56269022)
[»] chr8 (3 HSPs)
chr8 (1-66)||(7532852-7532917)
chr8 (10-66)||(6237544-6237600)
chr8 (1-63)||(36054962-36055024)
[»] scaffold0169 (1 HSPs)
scaffold0169 (11-63)||(8988-9040)
[»] scaffold0050 (1 HSPs)
scaffold0050 (7-71)||(37361-37425)
[»] chr5 (1 HSPs)
chr5 (7-63)||(4293811-4293867)


Alignment Details
Target: scaffold0014 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 73506 - 73719
Alignment:
Q  1 tccaacacaatatttctattattgttctttt-aaccaatgtcccaagaacactctttagcatttcccctatttataaagatgagtatatggacaagctat 99  Q
    |||||||||||||||| |||||||||||||| ||| ||||||| | | ||||||||||||||||||| || |||||||||||| ||||||||||||||||    
T  73506 tccaacacaatatttcaattattgttctttttaactaatgtcctatggacactctttagcatttccc-tacttataaagatgactatatggacaagctat 73604  T
Q  100 aagtcacttagcttacttcatttcatttgtataataattgtttgatttgtattacaaatatattattcagacttaactcttagattggattttattgaaa 199  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  73605 aagtcagttagcttacatcatttcatttgtataataattgtttgatttgtattacaaatatattattcagacttaactcttagattggattctaatgaaa 73704  T
Q  200 tccttgtagaataat 214  Q
    |||||||||| ||||    
T  73705 tccttgtagattaat 73719  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39323471 - 39323536
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    |||||||||||||||||||||||||||  ||||||||||| | |||||||||||||||||||||||    
T  39323471 tccaacacaatatttctattattgttcacttaaccaatgtactaagaacactctttagcatttccc 39323536  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 21631266 - 21631209
Alignment:
Q  7 acaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttc 64  Q
    |||||||||||||| || |  | ||||||||||||||||  |||||||||||||||||    
T  21631266 acaatatttctatttttatcatcttaaccaatgtcccaaagacactctttagcatttc 21631209  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 11803390 - 11803334
Alignment:
Q  10 atatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    ||||||||||| |||||| ||||||||||| ||||| |  ||| |||||||||||||    
T  11803390 atatttctatttttgttcatttaaccaatgccccaatagtactatttagcatttccc 11803334  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 14331905 - 14331969
Alignment:
Q  2 ccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    |||| ||||| |||||||| || |  |||||||||||| ||||||  ||||||||||||||||||    
T  14331905 ccaatacaatgtttctatttttatcattttaaccaatgccccaagggcactctttagcatttccc 14331969  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 32268098 - 32268138
Alignment:
Q  23 tgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  32268098 tgttcttttaatcaatgccccaaaaacactctttagcattt 32268138  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 39421080 - 39421132
Alignment:
Q  11 tatttctattattgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    ||||||||||  |||||| ||||||||||||||||| ||||| |||| |||||    
T  39421080 tatttctatttatgttctcttaaccaatgtcccaaggacactgtttaacattt 39421132  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2958511 - 2958449
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    |||||||||||||||  |||||||||||||||| |||||||||||| ||||| ||||||||||    
T  2958511 tccaacacaatattttcattattgttcttttaaacaatgtcccaaggacactatttagcattt 2958449  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 33901324 - 33901378
Alignment:
Q  9 aatatttctattattgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    |||||||||||||||||||| ||||||||||||| ||  ||||||||||||||||    
T  33901324 aatatttctattattgttctattaaccaatgtcctaaagacactctttagcattt 33901378  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 33474416 - 33474470
Alignment:
Q  11 tatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttcc 65  Q
    |||||||||| ||||||| |||||||||| ||||| |||||| ||||||||||||    
T  33474416 tatttctatttttgttctcttaaccaatgccccaaaaacactatttagcatttcc 33474470  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 34111873 - 34111836
Alignment:
Q  2 ccaacacaatatttctattattgttcttttaaccaatg 39  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  34111873 ccaacacaatatttctattattgttctcttaaccaatg 34111836  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 1907625 - 1907567
Alignment:
Q  7 acaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttcc 65  Q
    ||||||||||| || || | |||||| |||||||| ||||| |||||||||||||||||    
T  1907625 acaatatttctctttttatccttttatccaatgtctcaagagcactctttagcatttcc 1907567  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 36856623 - 36856677
Alignment:
Q  12 atttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    ||||||||| |||||| |||| |||||| || ||| |||||||||||||||||||    
T  36856623 atttctatttttgttcctttatccaatgccctaaggacactctttagcatttccc 36856677  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 3408260 - 3408304
Alignment:
Q  3 caacacaatatttctattattgttcttttaaccaatgtcccaaga 47  Q
    |||||||| ||||||||| |||||||||||  |||||||||||||    
T  3408260 caacacaaaatttctatttttgttcttttattcaatgtcccaaga 3408304  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1947472 - 1947537
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    ||||||| | ||||||||||  |||||| |||||||||| | ||||||||||||||||||||||||    
T  1947472 tccaacaaattatttctatttatgttctcttaaccaatgcctcaagaacactctttagcatttccc 1947537  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 16441807 - 16441768
Alignment:
Q  25 ttcttttaaccaatgtcccaagaacactctttagcatttc 64  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  16441807 ttcttttaaccaatgtccaaagaacactctttagcatttc 16441768  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28542023 - 28542061
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatg 39  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  28542023 tccaacacaatatttttattattgttctcttaaccaatg 28542061  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 35502022 - 35502078
Alignment:
Q  10 atatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    ||||||||||| | ||||| || ||||||||||||||||||||||||| ||||||||    
T  35502022 atatttctattttcgttctcttgaccaatgtcccaagaacactctttatcatttccc 35502078  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32385647 - 32385585
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    |||||||||||||| ||||||||||||| |||||||||| |  ||  ||||||||||||||||    
T  32385647 tccaacacaatattactattattgttctcttaaccaatgccttaaagacactctttagcattt 32385585  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 41998959 - 41999014
Alignment:
Q  11 tatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    ||||||||||  |||||| |||||||||||||||||  ||||||||| ||||||||    
T  41998959 tatttctatttatgttctcttaaccaatgtcccaagggcactctttaacatttccc 41999014  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 15502668 - 15502622
Alignment:
Q  11 tatttctattattgttcttttaaccaatgtcccaagaacactcttta 57  Q
    |||||||||| ||||||| |||||||||||| |||| ||||||||||    
T  15502668 tatttctatttttgttctcttaaccaatgtctcaaggacactcttta 15502622  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21195321 - 21195256
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    |||||||  ||||||||||| |||||| ||||||||||||| |||| |  || |||||||||||||    
T  21195321 tccaacaagatatttctatttttgttcctttaaccaatgtctcaaggattctatttagcatttccc 21195256  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31463335 - 31463273
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    |||||||||| ||||||||| |||||| |||| |||||| ||||||  |||||||||||||||    
T  31463335 tccaacacaaaatttctatttttgttcctttatccaatgccccaagggcactctttagcattt 31463273  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 51581498 - 51581433
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    |||||||||| ||||||||| |||||| |||| |||||| | ||||  ||||||||||||||||||    
T  51581498 tccaacacaaaatttctatttttgttcctttatccaatgcctcaagggcactctttagcatttccc 51581433  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 55465503 - 55465442
Alignment:
Q  2 ccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    ||||||||||||||||||||||| ||| |||||||||| || ||| |||  |||||||||||    
T  55465503 ccaacacaatatttctattattgatctcttaaccaatgccctaaggacatcctttagcattt 55465442  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 56268992 - 56269022
Alignment:
Q  9 aatatttctattattgttcttttaaccaatg 39  Q
    |||||||||||||||||||||||||||||||    
T  56268992 aatatttctattattgttcttttaaccaatg 56269022  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7532852 - 7532917
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    ||||| |||||||||||||| || | |  |||||||||| || |||||||||||||||||||||||    
T  7532852 tccaatacaatatttctatttttatccccttaaccaatgccctaagaacactctttagcatttccc 7532917  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 6237544 - 6237600
Alignment:
Q  10 atatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttccc 66  Q
    |||||| |||| |||||||||||||||||||||||||  || | |||||||||||||    
T  6237544 atatttttatttttgttcttttaaccaatgtcccaagggcattatttagcatttccc 6237600  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36055024 - 36054962
Alignment:
Q  1 tccaacacaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    |||||||||| |||| |||| |||||| |||| |||||| |||||  ||||||||||||||||    
T  36055024 tccaacacaaaatttttatttttgttcctttatccaatgccccaaagacactctttagcattt 36054962  T

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Target: scaffold0169 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 9040 - 8988
Alignment:
Q  11 tatttctattattgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    ||||||||||  |||| |||||||||||||||||||| |||| |||| |||||    
T  9040 tatttctatttatgttattttaaccaatgtcccaagagcactatttaacattt 8988  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 37425 - 37361
Alignment:
Q  7 acaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcatttcccctatt 71  Q
    |||||||||||||| |  | || ||| ||||||||| ||||||||||||||| ||||||| ||||    
T  37425 acaatatttctattttaatcctcttatccaatgtcctaagaacactctttagtatttcccttatt 37361  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 4293867 - 4293811
Alignment:
Q  7 acaatatttctattattgttcttttaaccaatgtcccaagaacactctttagcattt 63  Q
    |||||||| ||||| || | ||||||||||||| || |||||||||||||| |||||    
T  4293867 acaatattactatttttatccttttaaccaatgccctaagaacactctttaacattt 4293811  T

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