View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_high_23 (Length: 214)
Name: NF2258_1D_high_23
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 14278539 - 14278345
Alignment:
| Q |
7 |
atttctggtgttatgacaatccgtagcttaagaaagcagaatgcattttctcagggaaatgttgacagggtgaatgctagtataagaatggatttccata |
106 |
Q |
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| T |
14278539 |
atttctggtgttatgacaattcgtagcttaagaaagcagaatgcattttctcagggaaatgttgacagggtgaatgcaagtataagaatggattttcata |
14278440 |
T |
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| Q |
107 |
acattggtgcaaatgaatggcttggttttcgcttggactatacgggagtgattttcctttgcatttccaccctttttatgatctttttgccaagt |
201 |
Q |
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| T |
14278439 |
acattggtgcaaatgaatggcttggttttcgcttggactatacgggagtgattttcctttgcattgccaccctttttatgatctttttgccaagt |
14278345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 14300276 - 14300082
Alignment:
| Q |
7 |
atttctggtgttatgacaatccgtagcttaagaaagcagaatgcattttctcagggaaatgttgacagggtgaatgctagtataagaatggatttccata |
106 |
Q |
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| T |
14300276 |
atttctggtgttatgacaatccgtagctcaagaaagcagaatgcattttctcaagaaaatgttgacagggtgaatgcaagtctaagaatggattttcata |
14300177 |
T |
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| Q |
107 |
acattggtgcaaatgaatggcttggttttcgcttggactatacgggagtgattttcctttgcatttccaccctttttatgatctttttgccaagt |
201 |
Q |
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| T |
14300176 |
acaatggtgcaaatgaatggcttggttttcgcttggactatatgggagtgactttcctttgcattgccacgctttttatgatctttttgccaagt |
14300082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 14316750 - 14316556
Alignment:
| Q |
7 |
atttctggtgttatgacaatccgtagcttaagaaagcagaatgcattttctcagggaaatgttgacagggtgaatgctagtataagaatggatttccata |
106 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||| ||| ||||||||||||| |||| |
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| T |
14316750 |
atttctggtgttatgacaatccgttgcttaagaaagcagaatgcattttctcaagaaaatattgacagggtgaatgcaagtctaagaatggattttcata |
14316651 |
T |
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| Q |
107 |
acattggtgcaaatgaatggcttggttttcgcttggactatacgggagtgattttcctttgcatttccaccctttttatgatctttttgccaagt |
201 |
Q |
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| T |
14316650 |
acaatggtgcaaatgaatggcttggttttcgtttggactatatgggagttgttttcctttgcattgccaccctttttatgatctttttgccaagt |
14316556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 25881854 - 25881660
Alignment:
| Q |
7 |
atttctggtgttatgacaatccgtagcttaagaaagcagaatgcattttctcagggaaatgttgacagggtgaatgctagtataagaatggatttccata |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||||| ||| |||||||||||||||||| |
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| T |
25881854 |
atttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccata |
25881755 |
T |
|
| Q |
107 |
acattggtgcaaatgaatggcttggttttcgcttggactatacgggagtgattttcctttgcatttccaccctttttatgatctttttgccaagt |
201 |
Q |
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||| ||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||| | |||||||||||||||||||||| |||||| |
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| T |
25881754 |
acaatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgcactgccaccctttttatgatctttttaccaagt |
25881660 |
T |
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