View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2258_1D_high_8 (Length: 463)
Name: NF2258_1D_high_8
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 6 - 459
Target Start/End: Complemental strand, 35448958 - 35448505
Alignment:
| Q |
6 |
gtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctataataatggtggatcatcatttcgtatggtt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
35448958 |
gtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctatagtaatggtggatcatcatttcatatggtt |
35448859 |
T |
|
| Q |
106 |
gagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacgac |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35448858 |
gagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaac |
35448759 |
T |
|
| Q |
206 |
ctgaatattcaagttttcctcacatgtctggtgctgatagaaatgccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatctctggtgt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35448758 |
ctgaatattcaagttttcctcacatgtctggtgctgatagaaatgccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatctctggtat |
35448659 |
T |
|
| Q |
306 |
cgagtccaactcagattctgacaatgaagcagttatggattttctaaacatttgttctagctttccggatcttgtttctctgttttctggtatgtcctct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448658 |
cgagtccaactcagattctgacaatgaagcagttatggattttctaaacacttgttctagctttccggatcttgtttctctgttttctggtatgtcctct |
35448559 |
T |
|
| Q |
406 |
ctcttgtgtttctgtgggtcaatgtgcgcgtttaaataaaatgttcaaagctta |
459 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35448558 |
ctcttgtgtttctgtgggtcaatgtgcatgtttaaataaaatgttcaaagctta |
35448505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 6 - 298
Target Start/End: Complemental strand, 35449189 - 35448891
Alignment:
| Q |
6 |
gtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctataataatggt---ggatcatcatttcgtatg |
102 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||||||||| | ||| ||||||||| |||||||| |||||| ||| |||||| ||||||||||| |
|
|
| T |
35449189 |
gtttggtattgatgaaaatgtcctggaggcctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatg |
35449090 |
T |
|
| Q |
103 |
gttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtac |
202 |
Q |
| |
|
||||| ||||||||||| |||||| ||| |||||||||| ||||||||||||| ||||||| ||| || |||||| |||||||| |||||||||| | |
|
|
| T |
35449089 |
gttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacag |
35448990 |
T |
|
| Q |
203 |
gacctgaatattcaagttttcctca---catgtctggtgctgatagaaatgccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatct |
298 |
Q |
| |
|
|||||||||| |||||| | ||| ||||| ||||| |||| ||||| | |||||||| || ||| |||| | |||| |||||||||||||||| |
|
|
| T |
35448989 |
aacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatct |
35448891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 35441087 - 35440986
Alignment:
| Q |
85 |
ggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatg |
184 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||| ||||||||| ||||||| | || ||||||||||||||||| | |||| ||||||||||||| |
|
|
| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatg |
35440988 |
T |
|
| Q |
185 |
gg |
186 |
Q |
| |
|
|| |
|
|
| T |
35440987 |
gg |
35440986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 35449347 - 35449239
Alignment:
| Q |
76 |
aataatggtggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaag |
175 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||||| |||||| || || ||||||| ||||||||||| | ||||||| || || |||| |
|
|
| T |
35449347 |
aataatggtggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacgaacatgggctttcaacaag |
35449248 |
T |
|
| Q |
176 |
gagttaatg |
184 |
Q |
| |
|
|| |||||| |
|
|
| T |
35449247 |
gaattaatg |
35449239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University